Wall clock time and date at job start Tue Mar 31 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46669 * 2 1 4 4 C 1.46501 * 119.99866 * 95.13442 * 3 2 1 5 5 C 1.50699 * 109.47035 * 264.27919 * 4 3 2 6 6 H 1.08003 * 120.00023 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00197 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00295 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99859 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47641 * 89.99699 * 9 7 5 11 11 H 1.48502 * 109.47013 * 329.99403 * 9 7 5 12 12 H 1.48507 * 109.47315 * 209.99928 * 9 7 5 13 13 C 1.34774 * 120.00045 * 275.12922 * 3 2 1 14 14 O 1.21284 * 119.99725 * 4.10357 * 13 3 2 15 15 C 1.50704 * 120.00253 * 184.10087 * 13 3 2 16 16 H 1.09001 * 109.49000 * 24.30950 * 15 13 3 17 17 C 1.53038 * 109.49726 * 144.37403 * 15 13 3 18 18 C 1.53043 * 109.53741 * 181.28697 * 17 15 13 19 19 C 1.53191 * 109.33733 * 298.68326 * 18 17 15 20 20 N 1.46922 * 108.77710 * 54.61812 * 19 18 17 21 21 C 1.34781 * 120.62914 * 126.41143 * 20 19 18 22 22 N 1.34766 * 120.00068 * 4.71155 * 21 20 19 23 23 O 1.21589 * 119.99878 * 184.71422 * 21 20 19 24 24 C 1.46931 * 118.74092 * 306.39424 * 20 19 18 25 25 H 1.09007 * 109.46469 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47078 * 299.99963 * 1 2 3 27 27 H 1.08996 * 109.47117 * 60.00736 * 1 2 3 28 28 H 1.08999 * 109.47485 * 240.00391 * 2 1 3 29 29 H 1.08998 * 109.47535 * 119.99906 * 2 1 3 30 30 H 1.09004 * 109.46858 * 144.28106 * 4 3 2 31 31 H 1.08996 * 109.46989 * 24.28237 * 4 3 2 32 32 H 0.97001 * 120.00242 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46065 * 301.33475 * 17 15 13 34 34 H 1.08991 * 109.46090 * 61.29725 * 17 15 13 35 35 H 1.08998 * 109.49424 * 178.71673 * 18 17 15 36 36 H 1.08995 * 109.49507 * 58.64820 * 18 17 15 37 37 H 1.09003 * 109.58502 * 294.82863 * 19 18 17 38 38 H 1.09000 * 109.69913 * 174.47947 * 19 18 17 39 39 H 0.97004 * 120.00457 * 5.06169 * 22 21 20 40 40 H 0.96997 * 120.00421 * 185.05637 * 22 21 20 41 41 H 1.08997 * 109.58201 * 293.81838 * 24 20 19 42 42 H 1.08998 * 109.58810 * 173.39550 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3694 2.0341 1.2637 5 6 1.1972 2.8449 1.7529 6 1 0.2819 2.8710 1.1801 7 6 1.2926 3.5525 2.9323 8 7 0.2694 4.2598 3.3596 9 14 2.8753 3.5068 3.9235 10 1 3.7689 4.6069 3.4804 11 1 3.5538 2.2028 3.7128 12 1 2.5616 3.6743 5.3653 13 6 2.1445 2.0514 -1.1625 14 8 1.7841 1.5380 -2.2006 15 6 2.7332 3.4387 -1.1726 16 1 3.3715 3.5692 -0.2987 17 6 3.5623 3.6325 -2.4443 18 6 4.1868 5.0297 -2.4401 19 6 3.0742 6.0826 -2.4222 20 7 2.1877 5.8145 -1.2817 21 6 1.9146 6.7806 -0.3823 22 7 2.3786 8.0311 -0.5748 23 8 1.2496 6.5237 0.6026 24 6 1.6042 4.4735 -1.1403 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2255 2.6905 1.1078 31 1 2.6225 1.2768 2.0057 32 1 0.3364 4.7573 4.1896 33 1 4.3515 2.8816 -2.4812 34 1 2.9185 3.5256 -3.3172 35 1 4.7955 5.1587 -3.3350 36 1 4.8120 5.1460 -1.5549 37 1 2.5038 6.0272 -3.3494 38 1 3.5104 7.0763 -2.3204 39 1 2.8460 8.2542 -1.3950 40 1 2.2452 8.7082 0.1067 41 1 0.9139 4.2869 -1.9629 42 1 1.0723 4.4046 -0.1914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103339913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:32 Heat of formation + Delta-G solvation = -59.143099 kcal Electronic energy + Delta-G solvation = -24388.944719 eV Core-core repulsion = 20983.286961 eV Total energy + Delta-G solvation = -3405.657758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17887 -39.04724 -36.72662 -35.22336 -33.59337 -32.51051 -32.03953 -31.27880 -29.86278 -27.51492 -25.12610 -24.15010 -22.46659 -22.32422 -20.97868 -19.29352 -18.22751 -17.93350 -16.85719 -16.49954 -16.36091 -15.56044 -14.88031 -14.56602 -14.54291 -13.97776 -13.92664 -13.65167 -13.35035 -12.98531 -12.82690 -12.64098 -12.48672 -12.32154 -11.98619 -11.71458 -11.35829 -11.21742 -10.99112 -10.81121 -10.72764 -10.55148 -10.25159 -10.13796 -10.07100 -9.59316 -9.38850 -9.27104 -8.99803 -8.49184 -8.20172 -7.70748 -6.00381 -4.00903 3.03348 3.29051 3.33669 3.37132 3.44073 3.72283 3.88755 4.40279 4.42835 4.87310 5.00788 5.08465 5.28820 5.33529 5.38387 5.54332 5.63926 5.75031 5.84967 5.91977 5.96286 5.99281 6.02800 6.15832 6.24372 6.25239 6.49875 6.56022 6.59872 6.65025 6.80471 6.92645 6.95702 7.13657 7.30127 7.42594 7.59622 8.20138 8.27120 8.54269 8.93448 9.04406 9.12378 9.58512 11.11901 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.009429 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.120830 B = 2969.001176 C = 4474.974181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 N -0.589 5.589 4 C 0.208 3.792 5 C -0.542 4.542 6 H 0.080 0.920 7 C 0.090 3.910 8 N -0.871 5.871 9 Si 0.865 3.135 10 H -0.276 1.276 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.528 3.472 14 O -0.570 6.570 15 C -0.116 4.116 16 H 0.098 0.902 17 C -0.102 4.102 18 C -0.133 4.133 19 C 0.111 3.889 20 N -0.625 5.625 21 C 0.695 3.305 22 N -0.876 5.876 23 O -0.549 6.549 24 C 0.138 3.862 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.389 0.611 40 H 0.409 0.591 41 H 0.058 0.942 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.556 3.018 -10.357 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.002 4.002 3 N -0.319 5.319 4 C 0.088 3.912 5 C -0.580 4.580 6 H 0.098 0.902 7 C -0.115 4.115 8 N -0.507 5.507 9 Si 0.692 3.308 10 H -0.202 1.202 11 H -0.193 1.193 12 H -0.211 1.211 13 C 0.315 3.685 14 O -0.451 6.451 15 C -0.138 4.138 16 H 0.116 0.884 17 C -0.140 4.140 18 C -0.171 4.171 19 C -0.013 4.013 20 N -0.365 5.365 21 C 0.394 3.606 22 N -0.447 5.447 23 O -0.422 6.422 24 C 0.015 3.985 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.218 0.782 40 H 0.241 0.759 41 H 0.077 0.923 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.806 2.511 -10.066 12.983 hybrid contribution 1.116 0.585 0.621 1.405 sum 8.923 3.096 -9.445 13.357 Atomic orbital electron populations 1.22093 0.96087 1.00741 1.03331 1.21241 0.94843 0.82908 1.01205 1.48030 1.63028 1.13201 1.07657 1.19889 0.96995 0.93409 0.80957 1.21171 0.99769 1.29139 1.07912 0.90222 1.24743 0.95537 0.94323 0.96927 1.69856 1.30049 1.29159 1.21674 0.87060 0.84936 0.78691 0.80129 1.20194 1.19290 1.21147 1.20183 0.78219 0.86984 0.83085 1.90583 1.51872 1.70018 1.32581 1.21602 0.99024 0.93039 1.00127 0.88421 1.21383 0.99049 0.95980 0.97638 1.21911 0.97583 0.95248 1.02361 1.21590 0.91683 0.98271 0.89727 1.47202 1.51051 1.11663 1.26545 1.16024 0.80652 0.80818 0.83093 1.43188 1.65644 1.11333 1.24582 1.91207 1.42159 1.80574 1.28270 1.21524 0.93399 0.77709 1.05839 0.93112 0.91026 0.92697 0.91671 0.91151 0.95741 0.95055 0.92646 0.91901 0.90807 0.90805 0.91466 0.91612 0.90857 0.78171 0.75911 0.92326 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.20 37.16 0.38 -2.61 16 2 C 0.12 2.21 6.09 -4.04 -0.02 2.18 16 3 N -0.59 -12.23 2.48 -175.05 -0.43 -12.66 16 4 C 0.21 4.72 4.07 -5.19 -0.02 4.69 16 5 C -0.54 -14.48 8.29 -34.44 -0.29 -14.77 16 6 H 0.08 2.38 7.77 -52.48 -0.41 1.98 16 7 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 8 N -0.87 -26.50 13.96 55.43 0.77 -25.72 16 9 Si 0.86 20.96 27.47 -169.99 -4.67 16.29 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.53 10.84 6.57 -10.98 -0.07 10.77 16 14 O -0.57 -12.51 16.01 5.55 0.09 -12.42 16 15 C -0.12 -2.12 2.15 -91.65 -0.20 -2.32 16 16 H 0.10 1.90 5.77 -51.93 -0.30 1.60 16 17 C -0.10 -1.48 4.81 -26.69 -0.13 -1.61 16 18 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 19 C 0.11 1.28 6.35 -3.71 -0.02 1.25 16 20 N -0.63 -10.40 2.97 -178.50 -0.53 -10.93 16 21 C 0.69 12.90 8.57 -86.92 -0.75 12.16 16 22 N -0.88 -11.08 8.74 27.63 0.24 -10.84 16 23 O -0.55 -13.71 16.60 5.29 0.09 -13.63 16 24 C 0.14 2.71 5.71 -3.71 -0.02 2.69 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 28 H 0.06 1.13 7.64 -51.93 -0.40 0.74 16 29 H 0.07 1.16 7.79 -51.93 -0.40 0.76 16 30 H 0.02 0.55 5.33 -51.93 -0.28 0.28 16 31 H 0.03 0.70 6.84 -51.93 -0.36 0.35 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.63 5.72 -51.93 -0.30 0.33 16 39 H 0.39 3.45 6.41 -40.82 -0.26 3.19 16 40 H 0.41 4.77 8.93 -40.82 -0.36 4.40 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.13 3.28 4.98 -51.93 -0.26 3.02 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -34.50 331.87 -7.12 -41.62 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.28 Total: 10.07 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -1.40 Total: 13.21 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.05 Total: -60.15 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: 0.18 Total: -26.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.50 -7.12 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103339913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.522 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds