Wall clock time and date at job start Tue Mar 31 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46856 * 2 1 4 4 C 1.50698 * 109.47311 * 120.00232 * 2 1 3 5 5 O 1.21287 * 119.99783 * 119.99915 * 4 2 1 6 6 N 1.34773 * 119.99971 * 300.00191 * 4 2 1 7 7 C 1.46496 * 120.00231 * 359.97438 * 6 4 2 8 8 C 1.46502 * 119.99861 * 179.97438 * 6 4 2 9 9 C 1.50708 * 109.47089 * 89.99989 * 8 6 4 10 10 O 1.21283 * 119.99546 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99699 * 179.97438 * 9 8 6 12 12 C 1.46504 * 119.99622 * 179.97438 * 11 9 8 13 13 C 1.53001 * 117.50167 * 223.74493 * 12 11 9 14 14 C 1.53001 * 117.49735 * 155.08369 * 12 11 9 15 15 N 1.46505 * 109.46954 * 240.00797 * 2 1 3 16 16 C 1.46498 * 119.99589 * 299.99459 * 15 2 1 17 17 C 1.36934 * 120.00233 * 119.99945 * 15 2 1 18 18 H 1.08000 * 120.00147 * 340.20688 * 17 15 2 19 19 C 1.38817 * 119.99602 * 160.20835 * 17 15 2 20 20 N 1.31615 * 120.00290 * 343.93867 * 19 17 15 21 21 Si 1.86803 * 119.99487 * 164.21459 * 19 17 15 22 22 H 1.48494 * 109.47008 * 265.13553 * 21 19 17 23 23 H 1.48506 * 109.47152 * 25.13787 * 21 19 17 24 24 H 1.48496 * 109.47040 * 145.13378 * 21 19 17 25 25 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46745 * 299.99683 * 1 2 3 27 27 H 1.08998 * 109.47061 * 59.99762 * 1 2 3 28 28 H 1.09008 * 109.46916 * 89.99888 * 7 6 4 29 29 H 1.09001 * 109.47611 * 210.00001 * 7 6 4 30 30 H 1.09004 * 109.47094 * 330.00638 * 7 6 4 31 31 H 1.08999 * 109.47157 * 209.99647 * 8 6 4 32 32 H 1.08996 * 109.47534 * 330.00137 * 8 6 4 33 33 H 0.96998 * 120.00323 * 359.97438 * 11 9 8 34 34 H 1.09004 * 115.55058 * 9.42556 * 12 11 9 35 35 H 1.09004 * 117.49633 * 0.02562 * 13 12 11 36 36 H 1.08996 * 117.49650 * 145.01963 * 13 12 11 37 37 H 1.09001 * 117.50192 * 214.98079 * 14 12 11 38 38 H 1.09003 * 117.49589 * 359.97438 * 14 12 11 39 39 H 1.09001 * 109.47643 * 265.36854 * 16 15 2 40 40 H 1.09005 * 109.47497 * 25.36236 * 16 15 2 41 41 H 1.08999 * 109.47184 * 145.36603 * 16 15 2 42 42 H 0.96994 * 119.99809 * 180.27621 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 0.8650 0.9413 2.5890 8 6 2.1947 -0.9411 3.6506 9 6 3.5225 -0.3581 4.0611 10 8 4.0130 0.5453 3.4174 11 7 4.1647 -0.8406 5.1433 12 6 5.4556 -0.2743 5.5419 13 6 6.5608 -1.2515 5.9477 14 6 5.8599 -0.4032 7.0119 15 7 2.0183 -0.6905 -1.1963 16 6 1.6644 -2.0930 -1.4282 17 6 2.8056 -0.0249 -2.0976 18 1 2.8109 1.0549 -2.1161 19 6 3.5968 -0.7383 -2.9877 20 7 3.8419 -2.0136 -2.7741 21 14 4.3201 0.1140 -4.4843 22 1 3.4290 -0.0976 -5.6532 23 1 4.4444 1.5689 -4.2136 24 1 5.6618 -0.4516 -4.7758 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.1832 0.6437 2.6222 29 1 1.1228 1.4665 3.5087 30 1 1.0288 1.6001 1.7362 31 1 1.4768 -0.8155 4.4611 32 1 2.3155 -2.0023 3.4334 33 1 3.7721 -1.5629 5.6582 34 1 5.7539 0.6325 5.0157 35 1 6.3274 -2.3158 5.9177 36 1 7.5861 -0.9874 5.6886 37 1 6.4245 0.4185 7.4526 38 1 5.1652 -0.9090 7.6824 39 1 2.4565 -2.7360 -1.0443 40 1 0.7303 -2.3217 -0.9150 41 1 1.5431 -2.2651 -2.4976 42 1 4.3980 -2.5110 -3.3939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170777903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:46 Heat of formation + Delta-G solvation = -26.381458 kcal Electronic energy + Delta-G solvation = -23200.230272 eV Core-core repulsion = 19795.993165 eV Total energy + Delta-G solvation = -3404.237106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40755 -40.31282 -38.11351 -37.27811 -36.34408 -34.13967 -33.83121 -31.32627 -29.20078 -28.08064 -27.45256 -25.52332 -23.82555 -23.30474 -22.53655 -21.71655 -20.00837 -18.99195 -18.44156 -17.77745 -17.59014 -17.19887 -16.63707 -16.08486 -15.84381 -15.58947 -15.45127 -14.86342 -14.72246 -14.57828 -14.26564 -13.85216 -13.70827 -13.45850 -13.18998 -13.08108 -12.77962 -12.70516 -12.51281 -12.36603 -12.36136 -12.33787 -12.27885 -11.87928 -11.78306 -11.52405 -11.20436 -10.80159 -10.46148 -9.77964 -9.58565 -8.81922 -7.82290 -5.30309 1.43600 1.45837 1.50902 1.55678 1.67517 2.02476 2.34244 2.51171 2.95328 3.29643 3.61372 3.72302 3.79690 3.86622 4.02625 4.03992 4.24833 4.29236 4.36828 4.42944 4.48596 4.71967 4.72503 4.77049 4.79405 4.91155 4.98543 5.05962 5.08724 5.17119 5.26895 5.46471 5.48103 5.57278 5.61322 5.81006 6.25543 6.45589 6.48813 7.10731 7.21615 7.40205 7.85479 8.27491 9.20665 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.004525 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.474465 B = 6186.396331 C = 7066.896073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.085 0.915 4 C 0.491 3.509 5 O -0.572 6.572 6 N -0.607 5.607 7 C 0.076 3.924 8 C 0.098 3.902 9 C 0.492 3.508 10 O -0.580 6.580 11 N -0.689 5.689 12 C 0.046 3.954 13 C -0.197 4.197 14 C -0.154 4.154 15 N -0.591 5.591 16 C 0.193 3.807 17 C -0.273 4.273 18 H 0.078 0.922 19 C -0.057 4.057 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.279 1.279 23 H -0.265 1.265 24 H -0.299 1.299 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.102 0.898 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.119 0.881 39 H -0.004 1.004 40 H 0.024 0.976 41 H 0.016 0.984 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 4.253 22.310 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.103 0.897 4 C 0.278 3.722 5 O -0.450 6.450 6 N -0.341 5.341 7 C -0.066 4.066 8 C -0.029 4.029 9 C 0.279 3.721 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.061 4.061 13 C -0.236 4.236 14 C -0.192 4.192 15 N -0.313 5.313 16 C 0.048 3.952 17 C -0.403 4.403 18 H 0.096 0.904 19 C -0.252 4.252 20 N -0.582 5.582 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.189 1.189 24 H -0.226 1.226 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.178 0.822 32 H 0.120 0.880 33 H 0.256 0.744 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.015 0.985 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.995 4.272 21.647 22.865 hybrid contribution 1.088 -0.368 -0.801 1.400 sum -4.907 3.904 20.846 21.769 Atomic orbital electron populations 1.22317 0.92158 1.02339 1.04100 1.20751 0.96471 0.95656 0.83392 0.89730 1.22848 0.78892 0.84413 0.86024 1.90653 1.38677 1.28865 1.86780 1.47835 1.51610 1.30563 1.04073 1.22197 0.94813 0.85862 1.03691 1.21453 0.92890 0.98317 0.90255 1.21935 0.88218 0.82420 0.79530 1.90703 1.68904 1.32328 1.53966 1.45231 1.20653 1.39068 1.29213 1.21587 0.85398 0.99660 0.99410 1.23504 0.97828 0.98212 1.04022 1.23463 1.02701 1.02845 0.90189 1.44080 1.57449 1.09975 1.19749 1.20339 0.94011 0.84314 0.96506 1.19700 1.18910 0.91378 1.10264 0.90402 1.25916 0.98670 0.96999 1.03623 1.70378 1.40917 1.09748 1.37113 0.85132 0.76858 0.78261 0.79475 1.20548 1.18910 1.22565 0.93442 0.87733 0.91583 0.88752 0.89943 0.91219 0.82229 0.88043 0.74391 0.87624 0.87879 0.88073 0.86737 0.86273 0.98519 0.95800 0.96482 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.82 71.98 0.63 -4.09 16 2 C 0.15 6.44 2.32 44.24 0.10 6.55 16 3 H 0.08 3.64 7.10 -2.39 -0.02 3.62 16 4 C 0.49 21.42 6.97 87.66 0.61 22.03 16 5 O -0.57 -31.43 14.43 -3.05 -0.04 -31.47 16 6 N -0.61 -18.67 2.36 -851.11 -2.01 -20.68 16 7 C 0.08 1.55 8.80 127.77 1.12 2.68 16 8 C 0.10 2.40 5.89 85.64 0.50 2.91 16 9 C 0.49 14.71 7.90 87.66 0.69 15.41 16 10 O -0.58 -24.02 16.00 -3.04 -0.05 -24.07 16 11 N -0.69 -14.77 5.57 -442.51 -2.46 -17.23 16 12 C 0.05 0.99 6.43 44.99 0.29 1.28 16 13 C -0.20 -3.41 10.46 30.62 0.32 -3.09 16 14 C -0.15 -1.98 10.46 30.62 0.32 -1.66 16 15 N -0.59 -32.72 2.59 -706.96 -1.83 -34.55 16 16 C 0.19 10.89 7.64 127.77 0.98 11.87 16 17 C -0.27 -16.27 9.62 84.04 0.81 -15.46 16 18 H 0.08 4.41 7.81 -2.91 -0.02 4.39 16 19 C -0.06 -3.47 5.04 84.86 0.43 -3.04 16 20 N -0.94 -61.30 10.70 21.65 0.23 -61.07 16 21 Si 0.98 48.27 29.58 68.60 2.03 50.30 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 25 H 0.05 1.55 6.66 -2.39 -0.02 1.54 16 26 H 0.10 2.28 4.53 -2.39 -0.01 2.27 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.09 1.28 6.95 -2.38 -0.02 1.26 16 29 H 0.08 1.38 8.07 -2.39 -0.02 1.36 16 30 H 0.07 1.57 6.01 -2.38 -0.01 1.56 16 31 H 0.16 1.96 8.07 -2.39 -0.02 1.94 16 32 H 0.10 2.75 7.42 -2.39 -0.02 2.73 16 33 H 0.42 5.53 8.83 -92.71 -0.82 4.71 16 34 H 0.11 2.95 7.40 -2.39 -0.02 2.93 16 35 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.00 -0.23 6.73 -2.39 -0.02 -0.25 16 40 H 0.02 1.16 6.43 -2.38 -0.02 1.14 16 41 H 0.02 0.99 7.17 -2.39 -0.02 0.97 16 42 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -92.21 341.10 2.89 -89.32 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.21 Total: 14.10 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: 6.81 Total: 35.37 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -6.07 Total: -133.53 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.09 Total: -55.54 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -92.21 2.89 -89.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170777903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.935 kcal (2) G-P(sol) polarization free energy of solvation -92.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds