Wall clock time and date at job start Tue Mar 31 2020 02:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47085 * 2 1 4 4 C 1.46011 * 118.53826 * 90.00388 * 3 2 1 5 5 C 1.52982 * 110.04607 * 161.81515 * 4 3 2 6 6 N 1.47192 * 108.72751 * 50.29142 * 5 4 3 7 7 C 1.46897 * 110.99794 * 54.36994 * 6 5 4 8 8 C 1.50697 * 109.47501 * 70.23098 * 7 6 5 9 9 O 1.21296 * 119.99630 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00208 * 180.02562 * 8 7 6 11 11 C 1.37093 * 119.99926 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00438 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99969 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00122 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00163 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46986 * 59.99650 * 15 13 11 17 17 H 1.48504 * 109.47094 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47134 * 299.99607 * 15 13 11 19 19 C 1.46899 * 110.17502 * 291.00120 * 6 5 4 20 20 C 1.52990 * 109.38635 * 170.45523 * 19 6 5 21 21 C 1.53004 * 109.38667 * 290.14795 * 19 6 5 22 22 C 1.33716 * 118.54000 * 269.73079 * 3 2 1 23 23 O 1.21285 * 118.62139 * 1.71322 * 22 3 2 24 24 H 1.09005 * 109.47034 * 299.99773 * 1 2 3 25 25 H 1.09000 * 109.47383 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47695 * 59.99668 * 1 2 3 27 27 H 1.08994 * 109.47396 * 120.00439 * 2 1 3 28 28 H 1.09005 * 109.47034 * 240.00227 * 2 1 3 29 29 H 1.09000 * 109.37312 * 281.99306 * 4 3 2 30 30 H 1.08997 * 109.37246 * 41.63760 * 4 3 2 31 31 H 1.08997 * 109.59268 * 170.06684 * 5 4 3 32 32 H 1.09003 * 109.59299 * 290.36503 * 5 4 3 33 33 H 1.09009 * 109.46906 * 190.22812 * 7 6 5 34 34 H 1.08998 * 109.47348 * 310.22143 * 7 6 5 35 35 H 0.96996 * 119.99780 * 359.97438 * 10 8 7 36 36 H 0.97002 * 120.00530 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47130 * 51.72246 * 20 19 6 38 38 H 1.09012 * 109.47386 * 171.72349 * 20 19 6 39 39 H 1.08999 * 109.47663 * 291.71914 * 20 19 6 40 40 H 1.08996 * 109.47264 * 59.99811 * 21 19 6 41 41 H 1.08998 * 109.46750 * 180.02562 * 21 19 6 42 42 H 1.09006 * 109.46819 * 299.99757 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2509 2.0388 1.2827 5 6 3.1570 3.2564 1.0910 6 7 2.6158 4.0810 -0.0015 7 6 1.2103 4.4279 0.2474 8 6 1.1293 5.4081 1.3891 9 8 2.1429 5.7807 1.9415 10 7 -0.0693 5.8700 1.7971 11 6 -0.1428 6.7621 2.8354 12 1 0.7597 7.0946 3.3268 13 6 -1.3786 7.2379 3.2564 14 7 -2.4768 6.8331 2.6589 15 14 -1.4789 8.4530 4.6717 16 1 -0.7209 9.6817 4.3238 17 1 -2.8999 8.8032 4.9236 18 1 -0.8957 7.8405 5.8922 19 6 2.7665 3.3831 -1.2854 20 6 1.9928 4.1383 -2.3678 21 6 4.2478 3.3321 -1.6649 22 6 2.2364 1.9817 -1.1747 23 8 1.9918 1.3710 -2.1936 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.2976 2.3600 1.7025 30 1 2.7276 1.3374 1.9674 31 1 3.1840 3.8404 2.0110 32 1 4.1646 2.9260 0.8382 33 1 0.7830 4.8779 -0.6488 34 1 0.6531 3.5264 0.5022 35 1 -0.8798 5.5717 1.3555 36 1 -3.3395 7.1655 2.9525 37 1 2.2829 5.1889 -2.3557 38 1 2.2209 3.7096 -3.3437 39 1 0.9232 4.0546 -2.1753 40 1 4.8025 2.7985 -0.8932 41 1 4.3611 2.8149 -2.6177 42 1 4.6350 4.3471 -1.7546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186553332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:49 Heat of formation + Delta-G solvation = -72.045192 kcal Electronic energy + Delta-G solvation = -24014.568483 eV Core-core repulsion = 20608.351249 eV Total energy + Delta-G solvation = -3406.217235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41803 -40.08074 -38.28968 -37.24181 -35.89777 -33.39916 -33.27072 -32.08947 -30.25308 -28.53958 -27.92472 -26.16036 -25.13534 -23.85838 -22.45131 -21.09442 -19.93516 -18.74464 -18.52013 -17.73470 -17.49539 -17.12828 -16.58590 -16.18887 -16.07962 -15.54421 -15.23584 -15.18596 -14.78145 -14.48550 -14.05766 -13.85970 -13.65796 -13.46171 -13.31818 -13.14390 -13.01889 -12.95393 -12.90423 -12.80799 -12.63228 -12.40478 -12.25818 -12.11635 -11.89674 -11.71891 -11.43117 -11.28649 -10.28017 -9.98465 -9.85535 -9.22837 -8.43818 -5.92449 1.41639 1.43957 1.47100 1.54434 1.81310 2.06470 2.28267 2.60763 3.22102 3.29211 3.37181 3.72282 3.83671 3.90163 4.02983 4.10724 4.15016 4.20304 4.31871 4.43796 4.47116 4.50439 4.67654 4.72331 4.74587 4.76267 4.77881 4.86560 4.94050 4.97983 5.12845 5.20385 5.23234 5.39209 5.43783 5.75985 5.92306 6.05459 6.29399 6.61799 7.01505 7.15070 7.57999 8.12774 8.73391 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.004745 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.262178 B = 5899.739802 C = 6337.955211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 N -0.602 5.602 4 C 0.076 3.924 5 C 0.036 3.964 6 N -0.501 5.501 7 C 0.043 3.957 8 C 0.451 3.549 9 O -0.606 6.606 10 N -0.574 5.574 11 C -0.329 4.329 12 H 0.083 0.917 13 C -0.013 4.013 14 N -0.923 5.923 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.270 1.270 19 C 0.094 3.906 20 C -0.133 4.133 21 C -0.123 4.123 22 C 0.492 3.508 23 O -0.575 6.575 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.276 0.724 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 -12.036 -5.417 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.020 4.020 3 N -0.334 5.334 4 C -0.047 4.047 5 C -0.092 4.092 6 N -0.225 5.225 7 C -0.087 4.087 8 C 0.237 3.763 9 O -0.491 6.491 10 N -0.212 5.212 11 C -0.458 4.458 12 H 0.101 0.899 13 C -0.213 4.213 14 N -0.564 5.564 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.195 1.195 19 C 0.001 3.999 20 C -0.191 4.191 21 C -0.181 4.181 22 C 0.279 3.721 23 O -0.455 6.455 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.211 -11.604 -5.554 15.262 hybrid contribution -1.410 -0.202 0.577 1.537 sum 6.801 -11.806 -4.978 14.505 Atomic orbital electron populations 1.22052 0.95720 1.03129 1.01088 1.21643 0.94721 0.81664 1.03936 1.47704 1.64654 1.15194 1.05898 1.22223 1.00851 0.96576 0.85094 1.22705 0.98731 0.91351 0.96412 1.62243 1.16492 1.42244 1.01517 1.21955 0.90682 0.97778 0.98332 1.20402 0.83392 0.85605 0.86854 1.90471 1.35501 1.63091 1.60087 1.41915 1.07300 1.40441 1.31502 1.19635 0.94139 1.21214 1.10818 0.89871 1.26025 0.94124 0.99946 1.01199 1.69676 0.98510 1.45334 1.42902 0.85000 0.77405 0.78123 0.77896 1.19735 1.19880 1.19511 1.21450 0.99657 0.87329 0.91477 1.21862 0.98904 1.00976 0.97343 1.21752 0.90319 1.04160 1.01839 1.21402 0.77335 0.90253 0.83120 1.90634 1.53306 1.66154 1.35359 0.92801 0.89486 0.94657 0.87779 0.90643 0.92454 0.87002 0.88765 0.87927 0.87566 0.92077 0.77385 0.91426 0.89943 0.90131 0.93039 0.91655 0.90793 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.23 71.98 0.74 -2.70 16 2 C 0.10 2.13 5.99 86.38 0.52 2.65 16 3 N -0.60 -15.02 2.69 -825.28 -2.22 -17.24 16 4 C 0.08 1.82 5.67 86.47 0.49 2.31 16 5 C 0.04 0.99 5.55 86.24 0.48 1.47 16 6 N -0.50 -15.51 4.29 -855.53 -3.67 -19.18 16 7 C 0.04 1.52 4.53 85.56 0.39 1.91 16 8 C 0.45 20.58 7.56 87.66 0.66 21.24 16 9 O -0.61 -31.33 14.23 -3.08 -0.04 -31.37 16 10 N -0.57 -28.79 5.29 -306.99 -1.62 -30.41 16 11 C -0.33 -18.13 9.68 84.04 0.81 -17.31 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 15 Si 0.99 42.15 29.55 68.60 2.03 44.17 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 19 C 0.09 2.53 0.64 2.64 0.00 2.53 16 20 C -0.13 -3.46 7.08 71.98 0.51 -2.95 16 21 C -0.12 -2.74 8.43 71.98 0.61 -2.13 16 22 C 0.49 14.17 5.88 87.68 0.52 14.68 16 23 O -0.58 -19.38 15.73 -3.04 -0.05 -19.42 16 24 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 1.56 7.92 -2.39 -0.02 1.54 16 28 H 0.08 1.73 7.25 -2.38 -0.02 1.71 16 29 H 0.06 1.57 6.65 -2.39 -0.02 1.56 16 30 H 0.11 1.97 7.98 -2.39 -0.02 1.95 16 31 H 0.09 3.16 6.37 -2.39 -0.02 3.15 16 32 H 0.10 2.37 6.24 -2.39 -0.01 2.36 16 33 H 0.11 3.53 5.56 -2.38 -0.01 3.51 16 34 H 0.06 2.05 5.57 -2.39 -0.01 2.04 16 35 H 0.39 19.13 7.90 -92.71 -0.73 18.40 16 36 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 1.94 8.05 -2.38 -0.02 1.93 16 39 H 0.05 1.40 6.58 -2.39 -0.02 1.39 16 40 H 0.06 1.34 6.46 -2.39 -0.02 1.33 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -66.33 329.73 1.20 -65.14 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.30 Total: 36.03 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 6.19 Total: 21.46 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -7.23 Total: -116.01 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.09 Total: -50.79 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -66.33 1.20 -65.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186553332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.909 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds