Wall clock time and date at job start Tue Mar 31 2020 03:28:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.46826 * 2 1
4 4 H 1.09005 * 109.46958 * 57.94524 * 3 2 1
5 5 O 1.42893 * 109.47638 * 297.93996 * 3 2 1
6 6 C 1.42900 * 114.00174 * 152.47828 * 5 3 2
7 7 H 1.08991 * 109.46997 * 27.57109 * 6 5 3
8 8 C 1.53002 * 109.47134 * 267.56710 * 6 5 3
9 9 C 1.52995 * 109.47099 * 300.00151 * 8 6 5
10 10 C 1.53004 * 109.47581 * 300.00119 * 9 8 6
11 11 C 1.52994 * 109.47115 * 59.99618 * 10 9 8
12 12 H 1.09002 * 109.47117 * 60.00382 * 11 10 9
13 13 C 1.52999 * 109.47364 * 180.02562 * 11 10 9
14 14 C 1.53003 * 109.47662 * 300.00585 * 11 10 9
15 15 C 1.50704 * 109.46785 * 177.93976 * 3 2 1
16 16 O 1.21290 * 120.00114 * 120.00564 * 15 3 2
17 17 N 1.34783 * 119.99914 * 299.99749 * 15 3 2
18 18 C 1.46499 * 120.00228 * 0.02562 * 17 15 3
19 19 C 1.37095 * 119.99693 * 180.02562 * 17 15 3
20 20 H 1.07997 * 120.00229 * 325.13148 * 19 17 15
21 21 C 1.38951 * 120.00180 * 145.13087 * 19 17 15
22 22 N 1.31404 * 120.00255 * 157.84624 * 21 19 17
23 23 Si 1.86806 * 119.99565 * 337.84976 * 21 19 17
24 24 H 1.48504 * 109.47099 * 95.43536 * 23 21 19
25 25 H 1.48502 * 109.46913 * 215.43154 * 23 21 19
26 26 H 1.48493 * 109.47294 * 335.43493 * 23 21 19
27 27 H 1.08992 * 109.47635 * 296.63390 * 1 2 3
28 28 H 1.09003 * 109.47182 * 56.63889 * 1 2 3
29 29 H 1.09004 * 109.46761 * 176.63283 * 1 2 3
30 30 H 1.08995 * 109.47478 * 240.00193 * 2 1 3
31 31 H 1.09003 * 109.47300 * 119.99794 * 2 1 3
32 32 H 1.08994 * 109.47044 * 180.02562 * 8 6 5
33 33 H 1.08999 * 109.46501 * 60.00163 * 8 6 5
34 34 H 1.09002 * 109.47259 * 180.02562 * 9 8 6
35 35 H 1.09007 * 109.47600 * 59.99867 * 9 8 6
36 36 H 1.09007 * 109.46448 * 300.00454 * 10 9 8
37 37 H 1.08991 * 109.47430 * 180.02562 * 10 9 8
38 38 H 1.09002 * 109.47061 * 59.99896 * 13 11 10
39 39 H 1.09005 * 109.46960 * 300.00638 * 13 11 10
40 40 H 1.09003 * 109.47619 * 180.02562 * 13 11 10
41 41 H 1.08996 * 109.47415 * 179.97438 * 14 11 10
42 42 H 1.09001 * 109.47090 * 300.00414 * 14 11 10
43 43 H 1.08997 * 109.47060 * 89.53758 * 18 17 15
44 44 H 1.08998 * 109.47018 * 209.54214 * 18 17 15
45 45 H 1.09007 * 109.47128 * 329.54303 * 18 17 15
46 46 H 0.97003 * 119.99957 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6467 1.9669 0.8710
5 8 1.6036 2.1021 -1.1901
6 6 1.4579 3.5168 -1.0506
7 1 2.1368 3.8774 -0.2780
8 6 0.0163 3.8447 -0.6566
9 6 -0.9365 3.3384 -1.7413
10 6 -0.6039 4.0188 -3.0707
11 6 0.8377 3.6910 -3.4647
12 1 0.9488 2.6119 -3.5711
13 6 1.1706 4.3719 -4.7937
14 6 1.7907 4.1973 -2.3800
15 6 3.5461 1.4428 0.0511
16 8 4.1831 1.9573 -0.8437
17 7 4.1852 0.8715 1.0912
18 6 3.4158 0.2498 2.1717
19 6 5.5554 0.8723 1.1379
20 1 6.1268 0.7822 0.2259
21 6 6.2089 0.9890 2.3585
22 7 7.4469 0.5666 2.4840
23 14 5.3275 1.7462 3.8211
24 1 4.7348 0.6689 4.6539
25 1 6.2963 2.5241 4.6344
26 1 4.2507 2.6474 3.3379
27 1 -0.3634 0.4606 0.9185
28 1 -0.3634 0.5651 -0.8583
29 1 -0.3633 -1.0259 -0.0604
30 1 1.8934 -0.5138 -0.8899
31 1 1.8934 -0.5138 0.8900
32 1 -0.0949 4.9238 -0.5507
33 1 -0.2206 3.3599 0.2904
34 1 -1.9635 3.5724 -1.4608
35 1 -0.8255 2.2592 -1.8478
36 1 -0.7149 5.0979 -2.9642
37 1 -1.2830 3.6584 -3.8433
38 1 1.0596 5.4509 -4.6870
39 1 0.4917 4.0115 -5.5667
40 1 2.1975 4.1380 -5.0747
41 1 2.8176 3.9633 -2.6605
42 1 1.6795 5.2764 -2.2736
43 1 3.2356 -0.7983 1.9329
44 1 3.9770 0.3189 3.1036
45 1 2.4623 0.7663 2.2826
46 1 7.9029 0.6477 3.3363
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000195531066.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:13
Heat of formation + Delta-G solvation = -90.292233 kcal
Electronic energy + Delta-G solvation = -24437.855551 eV
Core-core repulsion = 21134.387409 eV
Total energy + Delta-G solvation = -3303.468142 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 283.193 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-39.78018 -38.48667 -36.16671 -34.80565 -33.28156 -32.13432 -31.85225 -29.74032
-27.37893 -26.46019 -26.31511 -24.26445 -22.41554 -21.54804 -21.16221 -19.71051
-18.76965 -17.10821 -16.64189 -15.88550 -15.66534 -15.56039 -14.83612 -14.48656
-14.09259 -13.89259 -13.85797 -13.56037 -13.18943 -12.71976 -12.62816 -12.54180
-12.39313 -12.09969 -12.07835 -11.89057 -11.71888 -11.61639 -11.51353 -11.29715
-10.97997 -10.85729 -10.73469 -10.54324 -10.40388 -10.25326 -10.12989 -9.87563
-9.80129 -9.48273 -9.03498 -8.14784 -7.76037 -6.40207 -3.94298 2.99610
3.19226 3.22372 3.66443 3.94865 4.12544 4.51539 4.80455 4.83016
4.91033 4.97596 5.19259 5.22755 5.25253 5.26825 5.40486 5.43555
5.49089 5.58366 5.63087 5.69374 5.73769 5.76422 5.83929 5.88958
5.91910 5.93982 5.97922 6.06540 6.06958 6.09000 6.12040 6.20692
6.29540 6.34252 6.37875 6.41104 6.56524 6.59089 6.65694 7.46973
7.62812 8.27772 8.52487 8.97658 9.32135 9.78267 10.72209
Molecular weight = 283.19amu
Principal moments of inertia in cm(-1)
A = 0.022733 B = 0.005099 C = 0.004732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.397211 B = 5490.003297 C = 5916.290909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.129 4.129
3 C 0.079 3.921
4 H 0.069 0.931
5 O -0.343 6.343
6 C 0.093 3.907
7 H 0.059 0.941
8 C -0.140 4.140
9 C -0.113 4.113
10 C -0.111 4.111
11 C -0.088 4.088
12 H 0.079 0.921
13 C -0.146 4.146
14 C -0.107 4.107
15 C 0.440 3.560
16 O -0.551 6.551
17 N -0.470 5.470
18 C 0.061 3.939
19 C -0.315 4.315
20 H 0.106 0.894
21 C 0.057 3.943
22 N -0.864 5.864
23 Si 0.881 3.119
24 H -0.275 1.275
25 H -0.288 1.288
26 H -0.267 1.267
27 H 0.048 0.952
28 H 0.063 0.937
29 H 0.052 0.948
30 H 0.073 0.927
31 H 0.089 0.911
32 H 0.066 0.934
33 H 0.060 0.940
34 H 0.053 0.947
35 H 0.071 0.929
36 H 0.055 0.945
37 H 0.056 0.944
38 H 0.049 0.951
39 H 0.050 0.950
40 H 0.055 0.945
41 H 0.076 0.924
42 H 0.065 0.935
43 H 0.057 0.943
44 H 0.061 0.939
45 H 0.056 0.944
46 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.910 4.012 -4.349 18.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.166 4.166
3 C 0.017 3.983
4 H 0.086 0.914
5 O -0.261 6.261
6 C 0.035 3.965
7 H 0.077 0.923
8 C -0.178 4.178
9 C -0.151 4.151
10 C -0.149 4.149
11 C -0.106 4.106
12 H 0.098 0.902
13 C -0.204 4.204
14 C -0.145 4.145
15 C 0.228 3.772
16 O -0.431 6.431
17 N -0.194 5.194
18 C -0.082 4.082
19 C -0.442 4.442
20 H 0.124 0.876
21 C -0.148 4.148
22 N -0.500 5.500
23 Si 0.709 3.291
24 H -0.203 1.203
25 H -0.216 1.216
26 H -0.192 1.192
27 H 0.068 0.932
28 H 0.082 0.918
29 H 0.071 0.929
30 H 0.092 0.908
31 H 0.107 0.893
32 H 0.084 0.916
33 H 0.078 0.922
34 H 0.072 0.928
35 H 0.090 0.910
36 H 0.074 0.926
37 H 0.075 0.925
38 H 0.068 0.932
39 H 0.069 0.931
40 H 0.074 0.926
41 H 0.095 0.905
42 H 0.084 0.916
43 H 0.075 0.925
44 H 0.079 0.921
45 H 0.074 0.926
46 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -17.440 4.161 -4.881 18.582
hybrid contribution -0.191 0.507 1.362 1.466
sum -17.631 4.668 -3.519 18.575
Atomic orbital electron populations
1.21747 0.95344 1.01360 1.01943 1.21835 0.96362 0.94308 1.04142
1.22041 0.92822 0.94770 0.88660 0.91354 1.87921 1.86240 1.18668
1.33267 1.21999 0.94468 0.82121 0.97897 0.92315 1.22051 0.96131
1.00865 0.98720 1.21437 0.97682 1.01319 0.94613 1.21577 0.96425
0.99950 0.96919 1.21034 0.94153 1.01263 0.94151 0.90242 1.21834
1.01441 1.00129 0.96969 1.21638 1.00612 0.98503 0.93705 1.20934
0.89352 0.81716 0.85229 1.90555 1.67688 1.46851 1.38009 1.43717
1.06528 1.49633 1.19492 1.22172 0.95610 0.97922 0.92532 1.19079
0.78782 1.50217 0.96100 0.87608 1.25334 0.95498 0.95985 0.97982
1.69758 1.12399 1.41733 1.26142 0.86930 0.79764 0.79920 0.82451
1.20270 1.21551 1.19208 0.93248 0.91807 0.92890 0.90813 0.89320
0.91556 0.92161 0.92806 0.91008 0.92597 0.92490 0.93165 0.93125
0.92600 0.90486 0.91617 0.92452 0.92080 0.92571 0.91609
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.75 9.83 37.16 0.37 -1.38 16
2 C -0.13 -1.95 5.31 -26.73 -0.14 -2.09 16
3 C 0.08 1.41 1.56 -27.88 -0.04 1.37 16
4 H 0.07 1.13 7.10 -51.93 -0.37 0.76 16
5 O -0.34 -5.99 7.20 -55.14 -0.40 -6.38 16
6 C 0.09 1.45 2.58 -26.73 -0.07 1.38 16
7 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16
8 C -0.14 -1.70 5.66 -26.73 -0.15 -1.86 16
9 C -0.11 -1.25 5.78 -26.73 -0.15 -1.41 16
10 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16
11 C -0.09 -1.11 2.58 -90.62 -0.23 -1.34 16
12 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16
13 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16
14 C -0.11 -1.55 4.94 -26.73 -0.13 -1.69 16
15 C 0.44 10.42 6.97 -10.98 -0.08 10.35 16
16 O -0.55 -15.25 16.23 -14.36 -0.23 -15.48 16
17 N -0.47 -11.47 2.63 -122.19 -0.32 -11.79 16
18 C 0.06 1.19 7.60 59.85 0.46 1.65 16
19 C -0.31 -9.03 9.42 -14.93 -0.14 -9.17 16
20 H 0.11 3.43 7.86 -52.49 -0.41 3.02 16
21 C 0.06 1.60 5.32 -17.47 -0.09 1.50 16
22 N -0.86 -25.12 13.96 55.50 0.77 -24.35 16
23 Si 0.88 20.56 24.90 -169.99 -4.23 16.33 16
24 H -0.28 -5.92 6.68 56.52 0.38 -5.55 16
25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16
29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
31 H 0.09 1.28 4.48 -51.93 -0.23 1.05 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
35 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16
36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
43 H 0.06 0.99 6.88 -51.93 -0.36 0.63 16
44 H 0.06 1.27 2.91 -51.93 -0.15 1.12 16
45 H 0.06 0.91 6.06 -51.93 -0.31 0.59 16
46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 345.02 15.07 5.20 5.20
Total: -1.00 -31.86 345.02 -7.36 -39.22
By element:
Atomic # 1 Polarization: 10.50 SS G_CDS: -7.94 Total: 2.56 kcal
Atomic # 6 Polarization: -5.09 SS G_CDS: -0.21 Total: -5.31 kcal
Atomic # 7 Polarization: -36.59 SS G_CDS: 0.45 Total: -36.14 kcal
Atomic # 8 Polarization: -21.24 SS G_CDS: -0.63 Total: -21.87 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -4.23 Total: 16.33 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -31.86 -7.36 -39.22 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195531066.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.074 kcal
(2) G-P(sol) polarization free energy of solvation -31.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.932 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds