Wall clock time and date at job start Tue Mar 31 2020 03:28:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.46826 * 2 1
4 4 H 1.09005 * 109.46958 * 57.94524 * 3 2 1
5 5 O 1.42893 * 109.47638 * 297.93996 * 3 2 1
6 6 C 1.42900 * 114.00174 * 152.47828 * 5 3 2
7 7 H 1.08991 * 109.46997 * 27.57109 * 6 5 3
8 8 C 1.53002 * 109.47134 * 267.56710 * 6 5 3
9 9 C 1.52995 * 109.47099 * 300.00151 * 8 6 5
10 10 C 1.53004 * 109.47581 * 300.00119 * 9 8 6
11 11 C 1.52994 * 109.47115 * 59.99618 * 10 9 8
12 12 H 1.09002 * 109.47117 * 60.00382 * 11 10 9
13 13 C 1.52999 * 109.47364 * 180.02562 * 11 10 9
14 14 C 1.53003 * 109.47662 * 300.00585 * 11 10 9
15 15 C 1.50704 * 109.46785 * 177.93976 * 3 2 1
16 16 O 1.21290 * 120.00114 * 120.00564 * 15 3 2
17 17 N 1.34783 * 119.99914 * 299.99749 * 15 3 2
18 18 C 1.46499 * 120.00228 * 0.02562 * 17 15 3
19 19 C 1.37095 * 119.99693 * 180.02562 * 17 15 3
20 20 H 1.07997 * 120.00229 * 325.13148 * 19 17 15
21 21 C 1.38951 * 120.00180 * 145.13087 * 19 17 15
22 22 N 1.31404 * 120.00255 * 157.84624 * 21 19 17
23 23 Si 1.86806 * 119.99565 * 337.84976 * 21 19 17
24 24 H 1.48504 * 109.47099 * 95.43536 * 23 21 19
25 25 H 1.48502 * 109.46913 * 215.43154 * 23 21 19
26 26 H 1.48493 * 109.47294 * 335.43493 * 23 21 19
27 27 H 1.08992 * 109.47635 * 296.63390 * 1 2 3
28 28 H 1.09003 * 109.47182 * 56.63889 * 1 2 3
29 29 H 1.09004 * 109.46761 * 176.63283 * 1 2 3
30 30 H 1.08995 * 109.47478 * 240.00193 * 2 1 3
31 31 H 1.09003 * 109.47300 * 119.99794 * 2 1 3
32 32 H 1.08994 * 109.47044 * 180.02562 * 8 6 5
33 33 H 1.08999 * 109.46501 * 60.00163 * 8 6 5
34 34 H 1.09002 * 109.47259 * 180.02562 * 9 8 6
35 35 H 1.09007 * 109.47600 * 59.99867 * 9 8 6
36 36 H 1.09007 * 109.46448 * 300.00454 * 10 9 8
37 37 H 1.08991 * 109.47430 * 180.02562 * 10 9 8
38 38 H 1.09002 * 109.47061 * 59.99896 * 13 11 10
39 39 H 1.09005 * 109.46960 * 300.00638 * 13 11 10
40 40 H 1.09003 * 109.47619 * 180.02562 * 13 11 10
41 41 H 1.08996 * 109.47415 * 179.97438 * 14 11 10
42 42 H 1.09001 * 109.47090 * 300.00414 * 14 11 10
43 43 H 1.08997 * 109.47060 * 89.53758 * 18 17 15
44 44 H 1.08998 * 109.47018 * 209.54214 * 18 17 15
45 45 H 1.09007 * 109.47128 * 329.54303 * 18 17 15
46 46 H 0.97003 * 119.99957 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6467 1.9669 0.8710
5 8 1.6036 2.1021 -1.1901
6 6 1.4579 3.5168 -1.0506
7 1 2.1368 3.8774 -0.2780
8 6 0.0163 3.8447 -0.6566
9 6 -0.9365 3.3384 -1.7413
10 6 -0.6039 4.0188 -3.0707
11 6 0.8377 3.6910 -3.4647
12 1 0.9488 2.6119 -3.5711
13 6 1.1706 4.3719 -4.7937
14 6 1.7907 4.1973 -2.3800
15 6 3.5461 1.4428 0.0511
16 8 4.1831 1.9573 -0.8437
17 7 4.1852 0.8715 1.0912
18 6 3.4158 0.2498 2.1717
19 6 5.5554 0.8723 1.1379
20 1 6.1268 0.7822 0.2259
21 6 6.2089 0.9890 2.3585
22 7 7.4469 0.5666 2.4840
23 14 5.3275 1.7462 3.8211
24 1 4.7348 0.6689 4.6539
25 1 6.2963 2.5241 4.6344
26 1 4.2507 2.6474 3.3379
27 1 -0.3634 0.4606 0.9185
28 1 -0.3634 0.5651 -0.8583
29 1 -0.3633 -1.0259 -0.0604
30 1 1.8934 -0.5138 -0.8899
31 1 1.8934 -0.5138 0.8900
32 1 -0.0949 4.9238 -0.5507
33 1 -0.2206 3.3599 0.2904
34 1 -1.9635 3.5724 -1.4608
35 1 -0.8255 2.2592 -1.8478
36 1 -0.7149 5.0979 -2.9642
37 1 -1.2830 3.6584 -3.8433
38 1 1.0596 5.4509 -4.6870
39 1 0.4917 4.0115 -5.5667
40 1 2.1975 4.1380 -5.0747
41 1 2.8176 3.9633 -2.6605
42 1 1.6795 5.2764 -2.2736
43 1 3.2356 -0.7983 1.9329
44 1 3.9770 0.3189 3.1036
45 1 2.4623 0.7663 2.2826
46 1 7.9029 0.6477 3.3363
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000195531066.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:13
Heat of formation + Delta-G solvation = -109.816757 kcal
Electronic energy + Delta-G solvation = -24438.702198 eV
Core-core repulsion = 21134.387409 eV
Total energy + Delta-G solvation = -3304.314789 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 283.193 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.26898 -39.91270 -37.51070 -36.74078 -34.71159 -33.77368 -33.07128 -30.82429
-28.96638 -28.10149 -27.27714 -26.09223 -23.44907 -22.81720 -22.18429 -21.10287
-20.22383 -19.14972 -18.23350 -17.60358 -17.22123 -16.73307 -16.07223 -15.86869
-15.58814 -15.40879 -15.05425 -14.69924 -14.57291 -14.43957 -14.07135 -13.86046
-13.68617 -13.53557 -13.30382 -13.06839 -12.85948 -12.75388 -12.71252 -12.59581
-12.41791 -12.34525 -12.00740 -11.85517 -11.72010 -11.60519 -11.48868 -11.22798
-11.01793 -10.85346 -10.69960 -9.89603 -9.77109 -8.55041 -6.15852 1.15968
1.29657 1.42184 1.86610 2.14079 2.48328 2.87728 2.94521 3.74277
3.79454 3.85654 3.90220 3.94969 4.02927 4.20457 4.23365 4.31844
4.37634 4.43457 4.51417 4.57493 4.60755 4.65081 4.70775 4.74696
4.81870 4.88340 4.95865 4.99686 5.04102 5.10192 5.15886 5.20272
5.24663 5.33183 5.40042 5.45152 5.46800 5.50182 5.56436 5.70969
5.98128 6.23616 6.55803 6.90838 7.25361 7.83728 8.62801
Molecular weight = 283.19amu
Principal moments of inertia in cm(-1)
A = 0.022733 B = 0.005099 C = 0.004732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.397211 B = 5490.003297 C = 5916.290909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.126 4.126
3 C 0.091 3.909
4 H 0.095 0.905
5 O -0.353 6.353
6 C 0.084 3.916
7 H 0.031 0.969
8 C -0.131 4.131
9 C -0.111 4.111
10 C -0.106 4.106
11 C -0.084 4.084
12 H 0.052 0.948
13 C -0.144 4.144
14 C -0.108 4.108
15 C 0.428 3.572
16 O -0.609 6.609
17 N -0.480 5.480
18 C 0.053 3.947
19 C -0.340 4.340
20 H 0.039 0.961
21 C 0.010 3.990
22 N -0.911 5.911
23 Si 0.957 3.043
24 H -0.233 1.233
25 H -0.290 1.290
26 H -0.260 1.260
27 H 0.070 0.930
28 H 0.059 0.941
29 H 0.071 0.929
30 H 0.051 0.949
31 H 0.099 0.901
32 H 0.083 0.917
33 H 0.070 0.930
34 H 0.079 0.921
35 H 0.060 0.940
36 H 0.070 0.930
37 H 0.071 0.929
38 H 0.063 0.937
39 H 0.066 0.934
40 H 0.038 0.962
41 H 0.033 0.967
42 H 0.085 0.915
43 H 0.081 0.919
44 H 0.054 0.946
45 H 0.099 0.901
46 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.524 4.637 -2.259 23.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.163 4.163
3 C 0.029 3.971
4 H 0.113 0.887
5 O -0.271 6.271
6 C 0.027 3.973
7 H 0.049 0.951
8 C -0.169 4.169
9 C -0.148 4.148
10 C -0.144 4.144
11 C -0.103 4.103
12 H 0.071 0.929
13 C -0.201 4.201
14 C -0.145 4.145
15 C 0.218 3.782
16 O -0.493 6.493
17 N -0.203 5.203
18 C -0.089 4.089
19 C -0.467 4.467
20 H 0.057 0.943
21 C -0.192 4.192
22 N -0.548 5.548
23 Si 0.781 3.219
24 H -0.158 1.158
25 H -0.217 1.217
26 H -0.184 1.184
27 H 0.089 0.911
28 H 0.078 0.922
29 H 0.090 0.910
30 H 0.070 0.930
31 H 0.117 0.883
32 H 0.101 0.899
33 H 0.088 0.912
34 H 0.098 0.902
35 H 0.079 0.921
36 H 0.088 0.912
37 H 0.090 0.910
38 H 0.083 0.917
39 H 0.085 0.915
40 H 0.057 0.943
41 H 0.052 0.948
42 H 0.103 0.897
43 H 0.100 0.900
44 H 0.072 0.928
45 H 0.117 0.883
46 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -22.084 4.751 -2.781 22.759
hybrid contribution 1.379 0.299 0.576 1.524
sum -20.705 5.050 -2.205 21.426
Atomic orbital electron populations
1.21695 0.92090 1.02827 1.02857 1.21870 0.99034 0.91775 1.03652
1.22046 0.87998 0.97148 0.89874 0.88717 1.87934 1.85747 1.19847
1.33562 1.22210 0.96621 0.81078 0.97425 0.95067 1.21998 0.93263
1.02093 0.99520 1.21442 0.98639 1.00570 0.94155 1.21557 0.94554
1.00905 0.97360 1.20984 0.95459 0.99643 0.94211 0.92897 1.21813
1.00820 1.00924 0.96564 1.21646 0.98751 0.99722 0.94403 1.22213
0.92159 0.80015 0.83830 1.90517 1.69695 1.49032 1.40037 1.43840
1.05215 1.50205 1.21071 1.22470 0.96438 0.99687 0.90262 1.18656
0.81190 1.52478 0.94419 0.94308 1.26192 0.96384 0.95324 1.01348
1.69878 1.14549 1.42646 1.27732 0.85733 0.78503 0.79682 0.78018
1.15770 1.21732 1.18431 0.91131 0.92244 0.91022 0.92968 0.88259
0.89888 0.91153 0.90237 0.92137 0.91159 0.91033 0.91748 0.91535
0.94313 0.94832 0.89683 0.90047 0.92763 0.88309 0.90917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.73 9.83 71.98 0.71 -2.03 16
2 C -0.13 -3.54 5.31 30.59 0.16 -3.38 16
3 C 0.09 3.17 1.56 29.85 0.05 3.22 16
4 H 0.10 2.82 7.10 -2.38 -0.02 2.80 16
5 O -0.35 -12.35 7.20 -129.94 -0.94 -13.29 16
6 C 0.08 2.59 2.58 30.60 0.08 2.67 16
7 H 0.03 1.11 7.71 -2.39 -0.02 1.09 16
8 C -0.13 -2.79 5.66 30.59 0.17 -2.62 16
9 C -0.11 -2.06 5.78 30.59 0.18 -1.88 16
10 C -0.11 -1.97 5.20 30.59 0.16 -1.81 16
11 C -0.08 -2.10 2.58 -10.80 -0.03 -2.13 16
12 H 0.05 1.58 7.68 -2.39 -0.02 1.56 16
13 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16
14 C -0.11 -3.21 4.94 30.60 0.15 -3.06 16
15 C 0.43 20.97 6.97 87.66 0.61 21.58 16
16 O -0.61 -36.34 16.23 15.97 0.26 -36.08 16
17 N -0.48 -23.82 2.63 -658.88 -1.73 -25.55 16
18 C 0.05 1.93 7.60 127.77 0.97 2.90 16
19 C -0.34 -20.62 9.42 84.04 0.79 -19.82 16
20 H 0.04 2.79 7.86 -2.91 -0.02 2.77 16
21 C 0.01 0.54 5.32 84.93 0.45 1.00 16
22 N -0.91 -54.98 13.96 21.66 0.30 -54.68 16
23 Si 0.96 41.76 24.90 68.60 1.71 43.47 16
24 H -0.23 -8.62 6.68 99.48 0.66 -7.96 16
25 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16
26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16
27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
28 H 0.06 1.26 6.19 -2.39 -0.01 1.24 16
29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.10 2.55 4.48 -2.39 -0.01 2.54 16
32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
35 H 0.06 1.29 6.23 -2.38 -0.01 1.27 16
36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16
37 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16
38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
39 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16
42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
43 H 0.08 2.57 6.88 -2.39 -0.02 2.55 16
44 H 0.05 2.06 2.91 -2.39 -0.01 2.05 16
45 H 0.10 2.73 6.06 -2.38 -0.01 2.71 16
46 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16
Total: -1.00 -77.67 345.02 5.62 -72.05
By element:
Atomic # 1 Polarization: 20.97 SS G_CDS: 0.90 Total: 21.87 kcal
Atomic # 6 Polarization: -12.90 SS G_CDS: 5.12 Total: -7.79 kcal
Atomic # 7 Polarization: -78.80 SS G_CDS: -1.43 Total: -80.23 kcal
Atomic # 8 Polarization: -48.69 SS G_CDS: -0.68 Total: -49.37 kcal
Atomic # 14 Polarization: 41.76 SS G_CDS: 1.71 Total: 43.47 kcal
Total: -77.67 5.62 -72.05 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195531066.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.769 kcal
(2) G-P(sol) polarization free energy of solvation -77.666 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.435 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.817 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds