Wall clock time and date at job start Tue Mar 31 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47273 * 2 1 4 4 H 1.08999 * 109.47063 * 54.99521 * 3 2 1 5 5 O 1.42904 * 109.47289 * 295.00036 * 3 2 1 6 6 C 1.42902 * 114.00244 * 89.99668 * 5 3 2 7 7 H 1.08998 * 109.46944 * 330.00700 * 6 5 3 8 8 C 1.53005 * 109.46676 * 90.00292 * 6 5 3 9 9 C 1.52997 * 109.46562 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47437 * 299.99767 * 9 8 6 11 11 C 1.53002 * 109.46725 * 60.00394 * 10 9 8 12 12 H 1.08998 * 109.47333 * 60.00422 * 11 10 9 13 13 C 1.52998 * 109.46644 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47209 * 210.00432 * 6 5 3 15 15 C 1.50692 * 109.47233 * 174.99949 * 3 2 1 16 16 O 1.21301 * 120.00320 * 114.99796 * 15 3 2 17 17 N 1.34773 * 120.00189 * 294.72577 * 15 3 2 18 18 C 1.46505 * 119.99901 * 0.27125 * 17 15 3 19 19 C 1.37096 * 120.00469 * 180.27257 * 17 15 3 20 20 H 1.08005 * 119.99833 * 23.04843 * 19 17 15 21 21 C 1.38944 * 120.00698 * 203.04272 * 19 17 15 22 22 N 1.31416 * 119.99346 * 11.76866 * 21 19 17 23 23 Si 1.86796 * 120.00518 * 191.76529 * 21 19 17 24 24 H 1.48503 * 109.47121 * 60.00677 * 23 21 19 25 25 H 1.48505 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47404 * 300.00304 * 23 21 19 27 27 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47088 * 300.00603 * 1 2 3 29 29 H 1.09001 * 109.46968 * 59.99856 * 1 2 3 30 30 H 1.08997 * 109.46649 * 240.00013 * 2 1 3 31 31 H 1.09001 * 109.46968 * 120.00144 * 2 1 3 32 32 H 1.08994 * 109.47085 * 299.99976 * 8 6 5 33 33 H 1.08998 * 109.47101 * 60.00504 * 8 6 5 34 34 H 1.08998 * 109.47525 * 59.99898 * 9 8 6 35 35 H 1.09007 * 109.47129 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47064 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.46870 * 300.00532 * 10 9 8 38 38 H 1.08998 * 109.47840 * 59.99818 * 13 11 10 39 39 H 1.09011 * 109.46763 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.46958 * 299.99045 * 13 11 10 41 41 H 1.08998 * 109.47386 * 299.99997 * 14 6 5 42 42 H 1.09000 * 109.47556 * 60.00209 * 14 6 5 43 43 H 1.08999 * 109.46923 * 92.75160 * 18 17 15 44 44 H 1.08999 * 109.46987 * 212.75441 * 18 17 15 45 45 H 1.09002 * 109.46919 * 332.75487 * 18 17 15 46 46 H 0.97008 * 119.99781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0814 -1.2211 6 6 0.3928 2.7356 -1.1661 7 1 -0.2538 2.2153 -0.4596 8 6 0.5849 4.1836 -0.7106 9 6 -0.7742 4.8839 -0.6511 10 6 -1.4179 4.8669 -2.0390 11 6 -1.6099 3.4189 -2.4944 12 1 -2.2563 2.8984 -1.7878 13 6 -2.2530 3.4020 -3.8825 14 6 -0.2503 2.7186 -2.5542 15 6 3.5419 1.4442 0.1238 16 8 4.2252 1.8610 -0.7877 17 7 4.1258 0.9878 1.2495 18 6 3.3007 0.4845 2.3505 19 6 5.4920 0.9946 1.3644 20 1 6.0809 1.6729 0.7648 21 6 6.1189 0.1291 2.2523 22 7 5.4384 -0.8480 2.8084 23 14 7.9289 0.3541 2.6554 24 1 8.1395 1.6966 3.2543 25 1 8.3545 -0.6905 3.6214 26 1 8.7315 0.2355 1.4117 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.0430 4.1957 0.2783 33 1 1.2315 4.7040 -1.4171 34 1 -1.4205 4.3634 0.0555 35 1 -0.6374 5.9157 -0.3271 36 1 -2.3859 5.3662 -1.9967 37 1 -0.7716 5.3874 -2.7457 38 1 -1.6065 3.9223 -4.5891 39 1 -2.3902 2.3703 -4.2068 40 1 -3.2212 3.9009 -3.8405 41 1 0.3963 3.2389 -3.2607 42 1 -0.3871 1.6870 -2.8786 43 1 3.1753 -0.5934 2.2471 44 1 3.7886 0.7042 3.3001 45 1 2.3242 0.9681 2.3232 46 1 5.8761 -1.4525 3.4281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195531068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:16 Heat of formation + Delta-G solvation = -99.424431 kcal Electronic energy + Delta-G solvation = -23960.497855 eV Core-core repulsion = 20656.633711 eV Total energy + Delta-G solvation = -3303.864144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.67180 -38.41545 -36.49629 -34.58390 -33.05356 -32.21384 -31.35178 -29.98293 -27.16876 -26.44357 -25.93726 -24.09011 -22.36192 -21.61613 -21.08478 -19.90329 -19.01636 -16.88939 -16.69767 -15.78383 -15.41595 -14.88487 -14.72680 -14.34831 -14.27025 -14.05130 -13.82131 -13.51416 -13.19400 -12.85808 -12.77436 -12.44679 -12.12689 -11.96383 -11.82967 -11.73847 -11.58480 -11.24314 -11.19951 -11.04006 -10.98340 -10.95456 -10.78161 -10.53256 -10.46688 -10.40053 -10.36549 -10.19335 -9.91885 -9.05518 -8.97584 -8.15052 -7.63932 -6.28041 -3.84982 3.21456 3.26338 3.30213 3.76407 3.92648 4.22768 4.60926 4.71280 4.81452 4.99946 5.08494 5.12489 5.20991 5.25872 5.34202 5.39368 5.41226 5.49509 5.50749 5.54823 5.57969 5.66438 5.68588 5.74669 5.91048 5.94061 5.95198 6.03657 6.06347 6.12736 6.22642 6.24138 6.24969 6.29416 6.36246 6.44698 6.48336 6.63169 6.86174 7.22216 7.59692 7.64843 8.18417 8.54167 9.23539 9.44770 10.03151 10.75822 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.003952 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.513564 B = 7083.260665 C = 7374.521001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C 0.086 3.914 4 H 0.067 0.933 5 O -0.348 6.348 6 C 0.080 3.920 7 H 0.066 0.934 8 C -0.144 4.144 9 C -0.116 4.116 10 C -0.115 4.115 11 C -0.089 4.089 12 H 0.069 0.931 13 C -0.146 4.146 14 C -0.110 4.110 15 C 0.450 3.550 16 O -0.570 6.570 17 N -0.447 5.447 18 C 0.111 3.889 19 C -0.304 4.304 20 H 0.098 0.902 21 C 0.031 3.969 22 N -0.885 5.885 23 Si 0.927 3.073 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 5.684 -3.971 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.024 3.976 4 H 0.085 0.915 5 O -0.266 6.266 6 C 0.022 3.978 7 H 0.084 0.916 8 C -0.181 4.181 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.108 4.108 12 H 0.087 0.913 13 C -0.203 4.203 14 C -0.147 4.147 15 C 0.237 3.763 16 O -0.452 6.452 17 N -0.168 5.168 18 C -0.032 4.032 19 C -0.432 4.432 20 H 0.115 0.885 21 C -0.172 4.172 22 N -0.525 5.525 23 Si 0.754 3.246 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.928 5.732 -4.441 17.501 hybrid contribution 0.711 -0.103 0.688 0.995 sum -15.217 5.629 -3.754 16.653 Atomic orbital electron populations 1.21953 0.96141 1.01672 1.01449 1.22132 0.95604 0.96569 1.04343 1.21893 0.95079 0.93322 0.87279 0.91514 1.88070 1.35083 1.70426 1.32980 1.22299 0.86003 0.92141 0.97398 0.91604 1.22076 0.97227 0.96669 1.02171 1.21491 0.96379 1.00435 0.97050 1.21629 1.00414 0.96249 0.97006 1.21105 0.96220 0.96112 0.97321 0.91253 1.21812 1.00233 1.01772 0.96501 1.21631 0.95356 1.01138 0.96598 1.19843 0.88096 0.85074 0.83256 1.90529 1.64561 1.50909 1.39213 1.43492 1.06376 1.54986 1.11901 1.21607 0.91222 0.98881 0.91536 1.19603 0.80978 1.19378 1.23271 0.88466 1.25321 1.00084 0.94320 0.97491 1.69980 1.37067 1.15161 1.30297 0.85981 0.82322 0.77875 0.78419 1.19964 1.20973 1.19785 0.92607 0.93034 0.92207 0.90951 0.89419 0.91905 0.91073 0.92128 0.91881 0.92145 0.91800 0.92589 0.92635 0.92805 0.91058 0.91403 0.91940 0.91443 0.95693 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.58 37.16 0.32 -1.74 16 2 C -0.15 -2.59 5.35 -26.73 -0.14 -2.74 16 3 C 0.09 1.70 1.82 -27.89 -0.05 1.65 16 4 H 0.07 1.21 6.61 -51.93 -0.34 0.86 16 5 O -0.35 -6.82 9.10 -55.09 -0.50 -7.32 16 6 C 0.08 1.16 1.37 -26.73 -0.04 1.12 16 7 H 0.07 0.87 5.23 -51.93 -0.27 0.60 16 8 C -0.14 -1.97 5.53 -26.73 -0.15 -2.12 16 9 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 10 C -0.12 -1.09 5.20 -26.73 -0.14 -1.23 16 11 C -0.09 -0.87 2.72 -90.59 -0.25 -1.11 16 12 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 13 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 14 C -0.11 -1.37 4.73 -26.71 -0.13 -1.49 16 15 C 0.45 11.60 7.05 -10.99 -0.08 11.52 16 16 O -0.57 -17.02 16.21 -14.32 -0.23 -17.25 16 17 N -0.45 -11.70 3.02 -122.19 -0.37 -12.07 16 18 C 0.11 2.48 7.16 59.85 0.43 2.91 16 19 C -0.30 -8.68 9.27 -14.94 -0.14 -8.81 16 20 H 0.10 2.91 7.42 -52.48 -0.39 2.52 16 21 C 0.03 0.82 5.11 -17.47 -0.09 0.73 16 22 N -0.89 -23.64 10.66 55.50 0.59 -23.05 16 23 Si 0.93 21.04 29.57 -169.99 -5.03 16.02 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.06 0.77 5.54 -51.93 -0.29 0.48 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.58 5.14 -51.93 -0.27 1.31 16 32 H 0.06 0.92 7.96 -51.93 -0.41 0.50 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 43 H 0.06 1.43 6.49 -51.93 -0.34 1.09 16 44 H 0.07 1.58 7.15 -51.93 -0.37 1.20 16 45 H 0.02 0.46 5.91 -51.93 -0.31 0.15 16 46 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -31.81 348.25 -8.57 -40.38 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.02 Total: 1.61 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.27 Total: -3.57 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.22 Total: -35.12 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.73 Total: -24.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.81 -8.57 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195531068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.040 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds