Wall clock time and date at job start Tue Mar 31 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47273 * 2 1 4 4 H 1.08999 * 109.47063 * 54.99521 * 3 2 1 5 5 O 1.42904 * 109.47289 * 295.00036 * 3 2 1 6 6 C 1.42902 * 114.00244 * 89.99668 * 5 3 2 7 7 H 1.08998 * 109.46944 * 330.00700 * 6 5 3 8 8 C 1.53005 * 109.46676 * 90.00292 * 6 5 3 9 9 C 1.52997 * 109.46562 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47437 * 299.99767 * 9 8 6 11 11 C 1.53002 * 109.46725 * 60.00394 * 10 9 8 12 12 H 1.08998 * 109.47333 * 60.00422 * 11 10 9 13 13 C 1.52998 * 109.46644 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47209 * 210.00432 * 6 5 3 15 15 C 1.50692 * 109.47233 * 174.99949 * 3 2 1 16 16 O 1.21301 * 120.00320 * 114.99796 * 15 3 2 17 17 N 1.34773 * 120.00189 * 294.72577 * 15 3 2 18 18 C 1.46505 * 119.99901 * 0.27125 * 17 15 3 19 19 C 1.37096 * 120.00469 * 180.27257 * 17 15 3 20 20 H 1.08005 * 119.99833 * 23.04843 * 19 17 15 21 21 C 1.38944 * 120.00698 * 203.04272 * 19 17 15 22 22 N 1.31416 * 119.99346 * 11.76866 * 21 19 17 23 23 Si 1.86796 * 120.00518 * 191.76529 * 21 19 17 24 24 H 1.48503 * 109.47121 * 60.00677 * 23 21 19 25 25 H 1.48505 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47404 * 300.00304 * 23 21 19 27 27 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47088 * 300.00603 * 1 2 3 29 29 H 1.09001 * 109.46968 * 59.99856 * 1 2 3 30 30 H 1.08997 * 109.46649 * 240.00013 * 2 1 3 31 31 H 1.09001 * 109.46968 * 120.00144 * 2 1 3 32 32 H 1.08994 * 109.47085 * 299.99976 * 8 6 5 33 33 H 1.08998 * 109.47101 * 60.00504 * 8 6 5 34 34 H 1.08998 * 109.47525 * 59.99898 * 9 8 6 35 35 H 1.09007 * 109.47129 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47064 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.46870 * 300.00532 * 10 9 8 38 38 H 1.08998 * 109.47840 * 59.99818 * 13 11 10 39 39 H 1.09011 * 109.46763 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.46958 * 299.99045 * 13 11 10 41 41 H 1.08998 * 109.47386 * 299.99997 * 14 6 5 42 42 H 1.09000 * 109.47556 * 60.00209 * 14 6 5 43 43 H 1.08999 * 109.46923 * 92.75160 * 18 17 15 44 44 H 1.08999 * 109.46987 * 212.75441 * 18 17 15 45 45 H 1.09002 * 109.46919 * 332.75487 * 18 17 15 46 46 H 0.97008 * 119.99781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0814 -1.2211 6 6 0.3928 2.7356 -1.1661 7 1 -0.2538 2.2153 -0.4596 8 6 0.5849 4.1836 -0.7106 9 6 -0.7742 4.8839 -0.6511 10 6 -1.4179 4.8669 -2.0390 11 6 -1.6099 3.4189 -2.4944 12 1 -2.2563 2.8984 -1.7878 13 6 -2.2530 3.4020 -3.8825 14 6 -0.2503 2.7186 -2.5542 15 6 3.5419 1.4442 0.1238 16 8 4.2252 1.8610 -0.7877 17 7 4.1258 0.9878 1.2495 18 6 3.3007 0.4845 2.3505 19 6 5.4920 0.9946 1.3644 20 1 6.0809 1.6729 0.7648 21 6 6.1189 0.1291 2.2523 22 7 5.4384 -0.8480 2.8084 23 14 7.9289 0.3541 2.6554 24 1 8.1395 1.6966 3.2543 25 1 8.3545 -0.6905 3.6214 26 1 8.7315 0.2355 1.4117 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.0430 4.1957 0.2783 33 1 1.2315 4.7040 -1.4171 34 1 -1.4205 4.3634 0.0555 35 1 -0.6374 5.9157 -0.3271 36 1 -2.3859 5.3662 -1.9967 37 1 -0.7716 5.3874 -2.7457 38 1 -1.6065 3.9223 -4.5891 39 1 -2.3902 2.3703 -4.2068 40 1 -3.2212 3.9009 -3.8405 41 1 0.3963 3.2389 -3.2607 42 1 -0.3871 1.6870 -2.8786 43 1 3.1753 -0.5934 2.2471 44 1 3.7886 0.7042 3.3001 45 1 2.3242 0.9681 2.3232 46 1 5.8761 -1.4525 3.4281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195531068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:16 Heat of formation + Delta-G solvation = -117.341892 kcal Electronic energy + Delta-G solvation = -23961.274814 eV Core-core repulsion = 20656.633711 eV Total energy + Delta-G solvation = -3304.641103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13598 -39.91600 -37.85416 -36.66213 -34.49055 -33.38382 -33.04758 -31.05244 -28.84167 -27.74203 -27.25425 -25.97831 -23.31705 -22.96735 -22.12357 -21.18388 -20.47930 -18.94695 -18.31455 -17.41013 -16.82114 -16.38179 -16.22933 -15.71670 -15.63941 -15.42265 -15.11331 -14.81892 -14.59865 -14.16654 -13.88648 -13.63095 -13.33483 -13.27970 -13.22787 -13.10886 -13.01286 -12.77467 -12.70611 -12.63130 -12.42579 -12.16585 -12.14358 -11.98192 -11.86638 -11.64728 -11.37521 -11.32117 -11.06323 -10.98753 -10.44748 -10.06414 -9.71820 -8.35048 -6.01789 1.37590 1.39415 1.50021 1.95069 2.19124 2.50588 3.05668 3.25842 3.73791 3.78618 3.85386 3.93207 3.99228 4.04733 4.19505 4.24770 4.26502 4.35943 4.51950 4.54550 4.55550 4.59828 4.66162 4.79654 4.85129 4.86948 4.99332 5.01682 5.04379 5.07812 5.09870 5.15001 5.19290 5.29912 5.31225 5.31584 5.40991 5.42013 5.43070 5.45245 5.59621 6.02207 6.31220 6.53217 7.14841 7.41116 7.99653 8.66416 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.003952 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.513564 B = 7083.260665 C = 7374.521001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.100 3.900 4 H 0.089 0.911 5 O -0.380 6.380 6 C 0.073 3.927 7 H 0.088 0.912 8 C -0.145 4.145 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.083 4.083 12 H 0.084 0.916 13 C -0.144 4.144 14 C -0.107 4.107 15 C 0.432 3.568 16 O -0.627 6.627 17 N -0.456 5.456 18 C 0.120 3.880 19 C -0.350 4.350 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.893 5.893 23 Si 0.990 3.010 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.279 1.279 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.027 5.535 -2.794 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.039 3.961 4 H 0.107 0.893 5 O -0.299 6.299 6 C 0.016 3.984 7 H 0.105 0.895 8 C -0.183 4.183 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.101 4.101 12 H 0.103 0.897 13 C -0.202 4.202 14 C -0.145 4.145 15 C 0.221 3.779 16 O -0.514 6.514 17 N -0.176 5.176 18 C -0.022 4.022 19 C -0.478 4.478 20 H 0.085 0.915 21 C -0.200 4.200 22 N -0.531 5.531 23 Si 0.813 3.187 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.204 1.204 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.557 5.566 -3.231 19.641 hybrid contribution 1.547 -0.069 0.300 1.578 sum -17.010 5.497 -2.931 18.115 Atomic orbital electron populations 1.21909 0.92246 1.03448 1.02733 1.22083 0.98882 0.94238 1.02922 1.21698 0.90656 0.95350 0.88412 0.89328 1.88049 1.37910 1.71047 1.32888 1.22641 0.84314 0.92185 0.99258 0.89462 1.22083 0.99047 0.96554 1.00583 1.21475 0.94355 1.00637 0.98222 1.21642 1.01297 0.96217 0.96024 1.21099 0.94442 0.95978 0.98612 0.89738 1.21799 1.00793 1.02125 0.95434 1.21658 0.96635 1.01361 0.94840 1.20995 0.90846 0.83776 0.82311 1.90471 1.66608 1.53241 1.41072 1.43757 1.06207 1.54626 1.13029 1.21599 0.92299 0.98747 0.89573 1.19567 0.82517 1.20767 1.24934 0.91487 1.26066 1.04166 0.93440 0.96331 1.70038 1.38570 1.14830 1.29660 0.85059 0.76973 0.78551 0.78107 1.19203 1.18985 1.20444 0.90683 0.90879 0.91695 0.93238 0.90023 0.93259 0.93427 0.90473 0.91034 0.89763 0.92750 0.93227 0.92418 0.91062 0.93025 0.91433 0.92560 0.92760 0.91640 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.58 71.99 0.62 -2.81 16 2 C -0.14 -4.89 5.35 30.60 0.16 -4.72 16 3 C 0.10 3.99 1.82 29.84 0.05 4.04 16 4 H 0.09 3.08 6.61 -2.39 -0.02 3.07 16 5 O -0.38 -15.18 9.10 -129.99 -1.18 -16.37 16 6 C 0.07 2.05 1.37 30.59 0.04 2.09 16 7 H 0.09 2.07 5.23 -2.39 -0.01 2.05 16 8 C -0.14 -3.92 5.53 30.59 0.17 -3.75 16 9 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 10 C -0.11 -1.86 5.20 30.60 0.16 -1.70 16 11 C -0.08 -1.39 2.72 -10.78 -0.03 -1.42 16 12 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 13 C -0.14 -2.06 9.19 71.98 0.66 -1.40 16 14 C -0.11 -2.58 4.73 30.61 0.14 -2.44 16 15 C 0.43 23.16 7.05 87.66 0.62 23.77 16 16 O -0.63 -39.85 16.21 15.89 0.26 -39.59 16 17 N -0.46 -24.66 3.02 -658.89 -1.99 -26.64 16 18 C 0.12 5.35 7.16 127.77 0.91 6.26 16 19 C -0.35 -20.75 9.27 84.04 0.78 -19.97 16 20 H 0.07 4.28 7.42 -2.91 -0.02 4.26 16 21 C 0.00 0.12 5.11 84.92 0.43 0.55 16 22 N -0.89 -47.42 10.66 21.66 0.23 -47.18 16 23 Si 0.99 43.30 29.57 68.60 2.03 45.32 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.42 8.01 -2.39 -0.02 1.41 16 29 H 0.06 1.47 5.54 -2.39 -0.01 1.46 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.87 5.14 -2.39 -0.01 2.85 16 32 H 0.05 1.43 7.96 -2.39 -0.02 1.42 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.61 7.88 -2.39 -0.02 1.59 16 43 H 0.06 2.56 6.49 -2.39 -0.02 2.54 16 44 H 0.05 2.52 7.15 -2.39 -0.02 2.50 16 45 H 0.07 2.32 5.91 -2.39 -0.01 2.31 16 46 H 0.28 13.63 8.31 -92.70 -0.77 12.86 16 Total: -1.00 -73.02 348.25 5.20 -67.83 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.94 Total: 19.97 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 4.91 Total: -3.34 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.76 Total: -73.83 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.93 Total: -55.96 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.02 5.20 -67.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195531068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.514 kcal (2) G-P(sol) polarization free energy of solvation -73.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds