Wall clock time and date at job start Tue Mar 31 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46717 * 2 1 4 4 C 1.52997 * 109.47486 * 239.99763 * 2 1 3 5 5 O 1.45203 * 109.46768 * 119.99400 * 2 1 3 6 6 C 1.34630 * 117.00016 * 60.00745 * 5 2 1 7 7 O 1.21510 * 119.99963 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00059 * 179.97438 * 6 5 2 9 9 C 1.46507 * 120.00342 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47321 * 179.97438 * 9 8 6 11 11 H 1.08992 * 109.47280 * 305.00162 * 10 9 8 12 12 C 1.53002 * 109.46978 * 65.00089 * 10 9 8 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 C 1.50697 * 109.47239 * 180.02562 * 14 13 12 17 17 H 1.08001 * 119.99890 * 240.00284 * 16 14 13 18 18 C 1.37876 * 120.00428 * 59.99630 * 16 14 13 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 25 25 C 1.52996 * 109.46975 * 184.99627 * 10 9 8 26 26 H 1.09000 * 109.47147 * 300.00125 * 1 2 3 27 27 H 1.09000 * 109.46793 * 60.00349 * 1 2 3 28 28 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47261 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47204 * 299.99399 * 3 2 1 31 31 H 1.09000 * 109.47414 * 60.00038 * 3 2 1 32 32 H 1.09000 * 109.46701 * 300.00248 * 4 2 1 33 33 H 1.09005 * 109.46889 * 59.99758 * 4 2 1 34 34 H 1.08998 * 109.47024 * 180.02562 * 4 2 1 35 35 H 0.97003 * 120.00351 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.46961 * 59.99195 * 9 8 6 37 37 H 1.09000 * 109.46503 * 299.99769 * 9 8 6 38 38 H 1.09002 * 109.47097 * 299.99801 * 12 10 9 39 39 H 1.09001 * 109.47142 * 59.99766 * 12 10 9 40 40 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 41 41 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47153 * 180.02562 * 24 14 13 44 44 H 1.09001 * 109.46832 * 60.00321 * 24 14 13 45 45 H 1.09004 * 109.47368 * 60.00217 * 25 10 9 46 46 H 1.09001 * 109.47372 * 300.00372 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6523 -1.9722 1.3385 7 8 0.9511 -2.5094 0.5041 8 7 2.0680 -2.6654 2.4168 9 6 1.6740 -4.0667 2.5835 10 6 2.2752 -4.6149 3.8792 11 1 3.3547 -4.4651 3.8708 12 6 1.6675 -3.8787 5.0748 13 6 2.2691 -4.4264 6.3705 14 6 1.9630 -5.9214 6.4829 15 1 0.8835 -6.0714 6.4916 16 6 2.5551 -6.4608 7.7594 17 1 3.2915 -7.2499 7.7218 18 6 2.1567 -5.9470 8.9752 19 7 1.2596 -4.9863 9.0209 20 14 2.8900 -6.6161 10.5576 21 1 4.1055 -5.8380 10.9076 22 1 1.8945 -6.4986 11.6531 23 1 3.2533 -8.0437 10.3698 24 6 2.5707 -6.6576 5.2872 25 6 1.9685 -6.1096 3.9912 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2488 35 1 2.6282 -2.2367 3.0828 36 1 2.0397 -4.6498 1.7384 37 1 0.5872 -4.1354 2.6292 38 1 1.8859 -2.8137 4.9951 39 1 0.5878 -4.0285 5.0833 40 1 3.3487 -4.2762 6.3618 41 1 1.8365 -3.9016 7.2223 42 1 0.9796 -4.6246 9.8763 43 1 2.3523 -7.7225 5.3670 44 1 3.6503 -6.5074 5.2785 45 1 2.4014 -6.6342 3.1394 46 1 0.8889 -6.2594 3.9996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255187472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:25 Heat of formation + Delta-G solvation = -119.397423 kcal Electronic energy + Delta-G solvation = -22997.219647 eV Core-core repulsion = 19692.489409 eV Total energy + Delta-G solvation = -3304.730238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75612 -38.42863 -37.07791 -34.82320 -34.06125 -32.68927 -30.22321 -29.71573 -27.59663 -27.53785 -26.35518 -23.85716 -22.22570 -21.57116 -20.40950 -19.91333 -18.80764 -18.07818 -16.64714 -16.32340 -16.21552 -15.16125 -14.79119 -14.67352 -14.54302 -14.11555 -13.62231 -13.47500 -13.10740 -12.84589 -12.68428 -12.56537 -12.24939 -12.06588 -12.05886 -11.94685 -11.63596 -11.48476 -11.37778 -11.24069 -10.93037 -10.63819 -10.48824 -10.43761 -10.22768 -10.17817 -10.04425 -9.79063 -9.37407 -9.06872 -8.85120 -8.64254 -8.27678 -5.96356 -4.02409 2.20970 2.89028 3.30775 3.37888 3.40958 4.18196 4.45028 4.54571 4.58697 4.72968 5.05624 5.23300 5.26609 5.33160 5.34634 5.39427 5.44580 5.49300 5.58571 5.68424 5.78868 5.80806 5.83937 5.99275 6.11148 6.13421 6.18887 6.33057 6.33698 6.38300 6.49746 6.57870 6.58699 6.72949 6.78039 6.96103 7.15060 7.26728 7.50314 7.53165 7.77172 8.04321 8.17771 8.43098 8.49512 9.01986 9.62215 11.09011 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034847 B = 0.002982 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.331055 B = 9386.517513 C = 9826.840153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.647 3.353 7 O -0.574 6.574 8 N -0.704 5.704 9 C 0.141 3.859 10 C -0.096 4.096 11 H 0.072 0.928 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.048 3.952 15 H 0.025 0.975 16 C -0.512 4.512 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.107 4.107 25 C -0.106 4.106 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.407 0.593 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.091 0.909 42 H 0.259 0.741 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 10.106 -17.274 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.282 6.282 6 C 0.400 3.600 7 O -0.464 6.464 8 N -0.363 5.363 9 C 0.019 3.981 10 C -0.115 4.115 11 H 0.090 0.910 12 C -0.150 4.150 13 C -0.147 4.147 14 C 0.030 3.970 15 H 0.043 0.957 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.694 10.003 -17.605 20.260 hybrid contribution 0.603 -0.055 1.183 1.329 sum 1.297 9.948 -16.422 19.244 Atomic orbital electron populations 1.22518 0.94048 1.05160 1.02358 1.22026 0.94370 0.91469 0.82230 1.21858 1.02210 0.92673 1.03047 1.22512 1.01477 1.03591 0.96431 1.86305 1.71663 1.23936 1.46297 1.18121 0.79002 0.80363 0.82475 1.90876 1.41414 1.70497 1.43572 1.44896 1.55087 1.13128 1.23220 1.21571 1.00237 0.77912 0.98418 1.21453 1.00272 0.96712 0.93014 0.90976 1.21698 1.00156 0.97327 0.95791 1.21613 0.98114 0.99758 0.95259 1.18654 0.96085 0.91105 0.91199 0.95733 1.21246 1.23545 1.19336 0.90935 0.92864 1.24968 0.95041 0.95102 0.98936 1.69879 1.31189 1.26734 1.25169 0.86659 0.78870 0.79398 0.83439 1.20796 1.21320 1.20011 1.21621 0.99325 0.99129 0.94436 1.21514 1.01008 0.93249 0.98678 0.92143 0.91310 0.89294 0.91518 0.90273 0.91434 0.89323 0.91300 0.92255 0.75769 0.91665 0.91286 0.94041 0.92660 0.94877 0.89071 0.93130 0.93373 0.93421 0.93308 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 2 C 0.14 1.44 1.13 -90.62 -0.10 1.34 16 3 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 4 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 5 O -0.37 -4.79 9.94 -40.30 -0.40 -5.19 16 6 C 0.65 9.37 8.06 54.05 0.44 9.80 16 7 O -0.57 -9.31 11.88 -19.28 -0.23 -9.54 16 8 N -0.70 -9.46 5.29 -65.28 -0.35 -9.80 16 9 C 0.14 1.96 5.06 -4.04 -0.02 1.93 16 10 C -0.10 -1.46 2.22 -90.62 -0.20 -1.66 16 11 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.11 -1.99 5.08 -26.73 -0.14 -2.13 16 13 C -0.11 -2.45 4.98 -26.73 -0.13 -2.58 16 14 C 0.05 1.15 2.10 -91.77 -0.19 0.96 16 15 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 16 C -0.51 -13.82 8.56 -34.44 -0.29 -14.12 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.11 -2.13 5.15 -26.71 -0.14 -2.27 16 25 C -0.11 -1.73 5.21 -26.71 -0.14 -1.87 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 4.95 7.76 -40.82 -0.32 4.64 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.67 7.18 -51.93 -0.37 0.29 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -29.01 354.97 -8.43 -37.44 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.34 Total: 3.07 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.07 Total: -12.94 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.28 Total: -34.28 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.63 Total: -14.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.01 -8.43 -37.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255187472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.957 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds