Wall clock time and date at job start Tue Mar 31 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47096 * 300.00735 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00320 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.52997 * 109.46751 * 46.20485 * 14 13 12 16 16 N 1.46902 * 109.47320 * 180.02562 * 15 14 13 17 17 C 1.47015 * 110.99497 * 293.63652 * 16 15 14 18 18 C 1.53100 * 109.25750 * 177.60499 * 17 16 15 19 19 O 1.43014 * 109.25921 * 56.84628 * 18 17 16 20 20 C 1.43018 * 113.73847 * 301.33284 * 19 18 17 21 21 C 1.47003 * 111.00586 * 170.00023 * 16 15 14 22 22 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 23 23 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 24 24 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 26 26 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 27 27 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 28 28 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 29 29 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 30 30 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 31 31 H 1.08997 * 109.47258 * 166.20113 * 14 13 12 32 32 H 1.09001 * 109.46957 * 286.20350 * 14 13 12 33 33 H 1.09008 * 109.47373 * 299.99624 * 15 14 13 34 34 H 1.08994 * 109.47719 * 59.99874 * 15 14 13 35 35 H 1.09007 * 109.50697 * 297.53417 * 17 16 15 36 36 H 1.08998 * 109.51127 * 57.67041 * 17 16 15 37 37 H 1.08994 * 109.50843 * 296.91202 * 18 17 16 38 38 H 1.09005 * 109.53803 * 176.79794 * 18 17 16 39 39 H 1.08999 * 109.50353 * 298.73240 * 20 19 18 40 40 H 1.09000 * 109.54194 * 178.62855 * 20 19 18 41 41 H 1.09007 * 109.50397 * 302.32064 * 21 16 15 42 42 H 1.09003 * 109.51063 * 62.45101 * 21 16 15 43 43 H 1.09002 * 109.48908 * 180.71202 * 22 13 12 44 44 H 1.09002 * 109.49369 * 60.64073 * 22 13 12 45 45 H 1.08997 * 109.49355 * 296.78047 * 23 10 9 46 46 H 1.09003 * 109.49032 * 56.82589 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5753 -8.4442 -0.4527 16 7 4.5301 -9.5607 -0.4520 17 6 4.9392 -9.9047 -1.8216 18 6 5.9765 -11.0296 -1.7712 19 8 5.4246 -12.1494 -1.0736 20 6 5.0160 -11.8500 0.2639 21 6 3.9690 -10.7335 0.2341 22 6 4.0043 -4.7809 -1.1842 23 6 2.9687 -3.6562 -1.2558 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 0.9734 -4.8433 1.1788 28 1 0.8254 -5.0915 -0.5780 29 1 3.2356 -5.8353 1.1420 30 1 2.0486 -6.9718 0.4571 31 1 4.6460 -7.3360 -1.9580 32 1 5.1087 -6.9403 -0.2854 33 1 3.2036 -8.2841 0.5595 34 1 2.7409 -8.6797 -1.1132 35 1 4.0695 -10.2368 -2.3887 36 1 5.3751 -9.0289 -2.3022 37 1 6.8678 -10.6797 -1.2505 38 1 6.2410 -11.3273 -2.7859 39 1 5.8794 -11.5239 0.8438 40 1 4.5855 -12.7407 0.7216 41 1 3.6967 -10.4625 1.2543 42 1 3.0838 -11.0788 -0.3000 43 1 4.5519 -4.8316 -2.1253 44 1 4.6998 -4.5834 -0.3685 45 1 2.2897 -3.8396 -2.0885 46 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259188199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:07 Heat of formation + Delta-G solvation = -20.850101 kcal Electronic energy + Delta-G solvation = -22861.978840 eV Core-core repulsion = 19593.814686 eV Total energy + Delta-G solvation = -3268.164154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95274 -38.79339 -36.45971 -34.80142 -32.51414 -31.54721 -30.64949 -29.94720 -27.79400 -26.05787 -24.55050 -24.37006 -22.98573 -21.89560 -21.02419 -20.47449 -19.15908 -17.03889 -16.48046 -16.30652 -15.83457 -15.59399 -15.38197 -15.04083 -14.65090 -14.53072 -14.27937 -14.16940 -13.83563 -13.68784 -13.00566 -12.93502 -12.56513 -12.24876 -12.07169 -11.75583 -11.70816 -11.57225 -11.18226 -11.04472 -10.87402 -10.82379 -10.72576 -10.62054 -10.30983 -10.22454 -9.97815 -9.71313 -9.15708 -8.70390 -8.44237 -8.12732 -7.22225 -6.02680 -4.04064 3.30721 3.33522 3.38087 3.42844 3.55785 4.20751 4.42364 4.52062 4.62198 4.66316 4.82000 4.90587 4.95787 5.03610 5.08327 5.19305 5.29195 5.32417 5.34316 5.41800 5.45843 5.53368 5.56968 5.62079 5.66120 5.76989 5.84916 5.90190 5.92696 6.06084 6.19959 6.43329 6.57143 6.62913 6.65737 6.69510 6.79925 7.18465 7.25190 7.35545 7.38312 7.80591 8.09493 8.21478 8.55751 9.03875 9.60255 11.08284 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.049721 B = 0.002685 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.006029 B =10424.158989 C =10726.928232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.056 3.944 13 N -0.540 5.540 14 C 0.060 3.940 15 C 0.053 3.947 16 N -0.538 5.538 17 C 0.014 3.986 18 C 0.064 3.936 19 O -0.388 6.388 20 C 0.064 3.936 21 C 0.018 3.982 22 C 0.060 3.940 23 C 0.068 3.932 24 H 0.261 0.739 25 H -0.009 1.009 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.028 0.972 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -21.936 -1.718 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.072 4.072 13 N -0.265 5.265 14 C -0.068 4.068 15 C -0.075 4.075 16 N -0.263 5.263 17 C -0.114 4.114 18 C -0.013 4.013 19 O -0.306 6.306 20 C -0.013 4.013 21 C -0.110 4.110 22 C -0.068 4.068 23 C -0.061 4.061 24 H 0.070 0.930 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.886 -21.838 -1.538 24.021 hybrid contribution -0.443 1.045 -0.310 1.177 sum 9.443 -20.793 -1.848 22.911 Atomic orbital electron populations 1.69966 1.06071 1.26657 1.51141 1.24997 0.94862 0.99331 0.95481 0.86449 0.80067 0.83452 0.77500 1.19668 1.21113 1.21023 1.21194 0.93484 0.89949 1.49863 0.91873 1.19706 0.90056 0.87330 0.96096 1.62282 1.28142 1.02747 1.33238 1.22072 0.94778 0.90058 1.00391 1.22256 0.96277 0.98436 0.90234 1.62248 1.25884 1.03421 1.34983 1.22024 0.94050 0.89937 1.00766 1.22277 0.93300 0.90096 1.01792 1.62175 1.41096 1.06580 1.16476 1.22857 0.99051 0.99458 0.90036 1.22681 0.95210 0.85984 0.97472 1.87978 1.81601 1.34603 1.26450 1.22662 0.96981 0.97576 0.84075 1.22775 0.96900 0.91193 1.00167 1.22233 0.96093 0.88367 1.00107 1.21987 0.95443 0.97403 0.91271 0.92983 0.99074 0.95254 0.91085 0.95228 0.94227 0.91065 0.91099 0.94097 0.90100 0.93729 0.93800 0.89207 0.92233 0.88464 0.92222 0.88468 0.89521 0.93863 0.91228 0.94227 0.95352 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 9 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 10 N -0.54 -11.85 4.70 -235.90 -1.11 -12.95 16 11 C 0.06 1.04 5.61 -3.76 -0.02 1.02 16 12 C 0.06 0.85 4.93 -3.77 -0.02 0.83 16 13 N -0.54 -7.99 4.86 -234.46 -1.14 -9.13 16 14 C 0.06 0.72 5.22 -3.82 -0.02 0.70 16 15 C 0.05 0.56 4.22 -3.82 -0.02 0.55 16 16 N -0.54 -5.25 4.73 -234.31 -1.11 -6.36 16 17 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 18 C 0.06 0.52 7.01 37.21 0.26 0.78 16 19 O -0.39 -3.81 10.83 -35.23 -0.38 -4.19 16 20 C 0.06 0.51 7.01 37.21 0.26 0.77 16 21 C 0.02 0.15 5.64 -3.72 -0.02 0.13 16 22 C 0.06 0.96 5.58 -3.76 -0.02 0.94 16 23 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 26 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 27 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.92 5.99 -51.93 -0.31 0.61 16 31 H 0.07 0.80 6.52 -51.93 -0.34 0.46 16 32 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.08 0.87 6.16 -51.92 -0.32 0.55 16 34 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.75 6.38 -51.93 -0.33 0.41 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.83 6.79 -51.93 -0.35 1.47 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -30.83 349.32 -11.14 -41.97 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -8.33 Total: -4.23 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.05 Total: -0.90 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -2.62 Total: -54.56 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.38 Total: -4.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.83 -11.14 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259188199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.120 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds