Wall clock time and date at job start Tue Mar 31 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 120.00184 * 2 1 4 4 O 1.21279 * 120.00117 * 359.71605 * 3 2 1 5 5 C 1.50703 * 119.99971 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.49461 * 299.65849 * 5 3 2 7 7 C 1.53042 * 109.49854 * 179.56202 * 5 3 2 8 8 C 1.53034 * 109.53782 * 178.68228 * 7 5 3 9 9 C 1.53194 * 109.31498 * 61.36120 * 8 7 5 10 10 N 1.46929 * 108.77685 * 305.36474 * 9 8 7 11 11 C 1.34769 * 120.63206 * 233.58723 * 10 9 8 12 12 O 1.21589 * 120.00490 * 174.79734 * 11 10 9 13 13 N 1.34783 * 119.99862 * 354.78981 * 11 10 9 14 14 C 1.46499 * 119.99595 * 184.98529 * 13 11 10 15 15 C 1.53005 * 109.46749 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.46980 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00437 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99865 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47595 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47219 * 120.00320 * 20 18 16 23 23 H 1.48500 * 109.47093 * 240.00163 * 20 18 16 24 24 C 1.46932 * 118.73619 * 53.60550 * 10 9 8 25 25 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46825 * 300.00822 * 1 2 3 27 27 H 1.08998 * 109.46885 * 60.00422 * 1 2 3 28 28 H 0.97005 * 119.99918 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.45112 * 298.70145 * 7 5 3 30 30 H 1.09000 * 109.46036 * 58.65991 * 7 5 3 31 31 H 1.09001 * 109.50052 * 301.41448 * 8 7 5 32 32 H 1.09003 * 109.52407 * 181.33104 * 8 7 5 33 33 H 1.08997 * 109.58823 * 185.57557 * 9 8 7 34 34 H 1.09001 * 109.70260 * 65.21994 * 9 8 7 35 35 H 0.96994 * 119.99764 * 4.98869 * 13 11 10 36 36 H 1.09006 * 109.47210 * 299.99723 * 14 13 11 37 37 H 1.08994 * 109.47298 * 60.00229 * 14 13 11 38 38 H 1.08998 * 109.46910 * 300.00034 * 15 14 13 39 39 H 1.08994 * 109.47254 * 59.99932 * 15 14 13 40 40 H 0.96997 * 120.00053 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.58637 * 186.60079 * 24 10 9 42 42 H 1.09003 * 109.58544 * 66.17857 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5326 2.2175 -0.0052 5 6 3.6460 1.1671 -0.0006 6 1 4.0101 0.6584 0.8921 7 6 4.1569 2.6097 -0.0115 8 6 5.6869 2.6111 0.0211 9 6 6.2209 1.8995 -1.2261 10 7 5.6201 0.5607 -1.3004 11 6 6.3965 -0.5349 -1.4150 12 8 5.8948 -1.6419 -1.3804 13 7 7.7291 -0.4035 -1.5680 14 6 8.5598 -1.5873 -1.8018 15 6 10.0237 -1.1641 -1.9388 16 6 10.8783 -2.3820 -2.1787 17 1 10.4229 -3.3600 -2.2289 18 6 12.2416 -2.2476 -2.3351 19 7 12.7962 -1.0567 -2.2745 20 14 13.3008 -3.7571 -2.6332 21 1 12.4413 -4.9679 -2.6584 22 1 14.0015 -3.6209 -3.9354 23 1 14.3017 -3.8826 -1.5433 24 6 4.1568 0.4392 -1.2479 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.8124 3.1100 -0.9166 30 1 3.7746 3.1370 0.8625 31 1 6.0323 2.0891 0.9135 32 1 6.0500 3.6387 0.0372 33 1 7.3051 1.8103 -1.1598 34 1 5.9549 2.4693 -2.1164 35 1 8.1381 0.4749 -1.5232 36 1 8.4577 -2.2745 -0.9618 37 1 8.2371 -2.0825 -2.7176 38 1 10.1262 -0.4768 -2.7785 39 1 10.3461 -0.6693 -1.0227 40 1 13.7554 -0.9622 -2.3841 41 1 3.8792 -0.6135 -1.1961 42 1 3.7204 0.8908 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273232210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:21 Heat of formation + Delta-G solvation = -101.489321 kcal Electronic energy + Delta-G solvation = -22379.851573 eV Core-core repulsion = 18972.357546 eV Total energy + Delta-G solvation = -3407.494028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71781 -40.68129 -38.28929 -36.60281 -35.67372 -34.92209 -33.87597 -32.47233 -31.24560 -27.93225 -27.15510 -25.77326 -24.77777 -22.96057 -22.43994 -21.29926 -20.57581 -19.32304 -18.48073 -18.07788 -17.32166 -17.00531 -16.71035 -16.48758 -16.36392 -15.43233 -15.34480 -15.22868 -15.17824 -14.84731 -14.39358 -14.24221 -14.03574 -13.85318 -13.52958 -13.16603 -13.09559 -12.94184 -12.54601 -12.48769 -12.24374 -11.99936 -11.96327 -11.66672 -11.63460 -11.41787 -11.17653 -10.91899 -10.59450 -10.18215 -10.14185 -9.51216 -8.22688 -6.32516 1.40857 1.42400 1.44349 1.56521 1.70536 2.11564 2.26639 2.42150 2.98581 3.12448 3.59593 3.68064 3.79992 4.00809 4.09939 4.23006 4.43099 4.46411 4.49766 4.54368 4.56601 4.61977 4.73660 4.76584 4.88559 4.89279 4.93497 5.03321 5.13664 5.32591 5.34686 5.42401 5.47405 5.54081 5.61427 5.80169 5.92153 6.18909 6.45413 6.80972 6.97126 7.16110 7.36803 7.54449 8.89464 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.002913 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.540595 B = 9610.552004 C =10254.729585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.727 5.727 3 C 0.521 3.479 4 O -0.574 6.574 5 C -0.115 4.115 6 H 0.107 0.893 7 C -0.094 4.094 8 C -0.126 4.126 9 C 0.101 3.899 10 N -0.625 5.625 11 C 0.702 3.298 12 O -0.633 6.633 13 N -0.734 5.734 14 C 0.160 3.840 15 C 0.024 3.976 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.143 3.857 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.415 0.585 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.090 0.910 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.282 7.001 4.787 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.379 5.379 3 C 0.308 3.692 4 O -0.454 6.454 5 C -0.138 4.138 6 H 0.125 0.875 7 C -0.132 4.132 8 C -0.164 4.164 9 C -0.021 4.021 10 N -0.362 5.362 11 C 0.403 3.597 12 O -0.515 6.515 13 N -0.391 5.391 14 C 0.036 3.964 15 C -0.014 4.014 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 C 0.019 3.981 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.251 0.749 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.242 0.758 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.920 7.015 4.769 22.574 hybrid contribution 1.124 -0.633 -0.103 1.294 sum -19.796 6.382 4.667 21.316 Atomic orbital electron populations 1.21688 0.78629 1.04153 1.01637 1.45928 1.08679 1.08841 1.74436 1.20662 0.90036 0.83601 0.74942 1.90683 1.70974 1.32605 1.51106 1.21703 0.90801 1.00274 1.00982 0.87529 1.21290 0.95158 0.93236 1.03521 1.21909 0.94903 1.02262 0.97367 1.21946 0.98334 0.81866 0.99950 1.47222 1.06121 1.05469 1.77359 1.16021 0.81739 0.84239 0.77660 1.90838 1.74153 1.25787 1.60707 1.45424 1.05245 1.11665 1.76721 1.21086 0.90213 0.86060 0.99047 1.19125 0.89523 0.96470 0.96243 1.21491 0.92852 0.94209 1.49679 0.92256 1.25858 0.99452 0.99126 0.94745 1.70059 1.11787 1.24047 1.50744 0.85405 0.78434 0.79385 0.77870 1.18929 1.20306 1.20288 1.21327 0.78412 1.01779 0.96537 0.87570 0.92842 0.92867 0.74912 0.91189 0.90992 0.91593 0.87869 0.89757 0.89480 0.75766 0.93729 0.93737 0.97339 0.97347 0.92572 0.89147 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.70 127.77 1.37 2.36 16 2 N -0.73 -10.77 5.61 -484.53 -2.72 -13.49 16 3 C 0.52 10.42 7.16 87.66 0.63 11.05 16 4 O -0.57 -15.50 15.98 -3.03 -0.05 -15.55 16 5 C -0.12 -2.06 2.68 -11.46 -0.03 -2.09 16 6 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 7 C -0.09 -1.58 4.46 30.62 0.14 -1.44 16 8 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 9 C 0.10 1.83 6.39 86.36 0.55 2.38 16 10 N -0.62 -15.17 2.97 -836.90 -2.49 -17.66 16 11 C 0.70 23.64 8.29 179.05 1.49 25.12 16 12 O -0.63 -25.81 15.77 -4.00 -0.06 -25.87 16 13 N -0.73 -25.47 5.47 -478.52 -2.62 -28.09 16 14 C 0.16 6.84 5.62 86.38 0.49 7.32 16 15 C 0.02 1.19 5.09 29.85 0.15 1.34 16 16 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 17 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -53.75 13.29 21.45 0.28 -53.46 16 20 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 C 0.14 2.93 5.57 86.36 0.48 3.42 16 25 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.41 4.66 8.35 -92.70 -0.77 3.89 16 29 H 0.07 1.23 8.13 -2.38 -0.02 1.21 16 30 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.53 5.65 -2.39 -0.01 1.52 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.40 12.10 5.96 -92.71 -0.55 11.55 16 36 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.09 2.01 6.58 -2.39 -0.02 1.99 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.13 343.04 0.21 -71.92 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.30 Total: 18.18 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.14 Total: 18.80 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -7.54 Total: -112.70 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.11 Total: -41.42 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.13 0.21 -71.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273232210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.573 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds