Wall clock time and date at job start Tue Mar 31 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46983 * 2 1 4 4 C 1.50706 * 109.47261 * 240.00590 * 2 1 3 5 5 O 1.21280 * 120.00079 * 247.46648 * 4 2 1 6 6 N 1.34771 * 119.99817 * 67.45875 * 4 2 1 7 7 C 1.46929 * 120.62794 * 183.33299 * 6 4 2 8 8 C 1.52767 * 109.00765 * 233.58811 * 7 6 4 9 9 C 1.53041 * 109.38121 * 305.58884 * 8 7 6 10 10 C 1.53034 * 109.53864 * 61.23933 * 9 8 7 11 11 H 1.09007 * 109.49909 * 58.58734 * 10 9 8 12 12 C 1.50699 * 109.52183 * 178.66516 * 10 9 8 13 13 N 1.29048 * 120.00133 * 94.85839 * 12 10 9 14 14 O 1.34927 * 120.00371 * 274.85442 * 12 10 9 15 15 C 1.46927 * 120.63623 * 3.61870 * 6 4 2 16 16 N 1.46500 * 109.47316 * 120.00574 * 2 1 3 17 17 C 1.46500 * 119.99649 * 59.99849 * 16 2 1 18 18 C 1.36935 * 120.00064 * 240.00324 * 16 2 1 19 19 H 1.08008 * 119.99806 * 339.90144 * 18 16 2 20 20 C 1.38806 * 120.00266 * 159.89984 * 18 16 2 21 21 N 1.31621 * 120.00090 * 341.50065 * 20 18 16 22 22 Si 1.86799 * 120.00156 * 161.21588 * 20 18 16 23 23 H 1.48504 * 109.47020 * 60.00434 * 22 20 18 24 24 H 1.48495 * 109.47592 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47332 * 300.00570 * 22 20 18 26 26 H 1.08999 * 109.46878 * 60.45217 * 1 2 3 27 27 H 1.09000 * 109.47210 * 180.44897 * 1 2 3 28 28 H 1.08999 * 109.46984 * 300.44796 * 1 2 3 29 29 H 1.09000 * 109.58579 * 353.41940 * 7 6 4 30 30 H 1.09000 * 109.59005 * 113.84969 * 7 6 4 31 31 H 1.09001 * 109.56520 * 185.55034 * 8 7 6 32 32 H 1.09001 * 109.38500 * 65.51732 * 8 7 6 33 33 H 1.09004 * 109.45775 * 301.21587 * 9 8 7 34 34 H 1.09002 * 109.44569 * 181.25607 * 9 8 7 35 35 H 0.96996 * 120.00364 * 179.97438 * 13 12 10 36 36 H 0.96694 * 114.00218 * 180.02562 * 14 12 10 37 37 H 1.09003 * 109.58424 * 246.15729 * 15 6 4 38 38 H 1.09006 * 109.58426 * 6.43127 * 15 6 4 39 39 H 1.09003 * 109.47065 * 265.42452 * 17 16 2 40 40 H 1.08996 * 109.47627 * 25.43431 * 17 16 2 41 41 H 1.09005 * 109.46496 * 145.43735 * 17 16 2 42 42 H 0.96998 * 120.00060 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.6140 -1.7692 -1.1246 6 7 1.8352 -0.1688 -2.4489 7 6 2.2541 -0.8834 -3.6624 8 6 3.1476 0.0332 -4.4961 9 6 2.4156 1.3504 -4.7630 10 6 2.1131 2.0462 -3.4340 11 1 3.0448 2.2276 -2.8979 12 6 1.4215 3.3587 -3.6987 13 7 0.1329 3.4252 -3.6758 14 8 2.1495 4.4644 -3.9596 15 6 1.2029 1.1501 -2.5886 16 7 2.0184 -0.6907 1.1961 17 6 1.6644 -2.0933 1.4277 18 6 2.8056 -0.0253 2.0975 19 1 3.3319 0.8690 1.7980 20 6 2.9272 -0.5001 3.3962 21 7 2.0380 -1.3447 3.8741 22 14 4.3571 0.0534 4.4631 23 1 4.3129 1.5291 4.6234 24 1 4.2593 -0.5928 5.7964 25 1 5.6364 -0.3362 3.8174 26 1 -0.3633 0.5068 -0.8940 27 1 -0.3634 -1.0276 0.0081 28 1 -0.3633 0.5208 0.8859 29 1 2.8095 -1.7795 -3.3854 30 1 1.3755 -1.1610 -4.2447 31 1 3.3835 -0.4505 -5.4440 32 1 4.0698 0.2335 -3.9506 33 1 1.4818 1.1471 -5.2873 34 1 3.0433 1.9966 -5.3767 35 1 -0.3122 4.2701 -3.8458 36 1 1.6184 5.2572 -4.1158 37 1 0.2367 1.0417 -3.0814 38 1 1.0625 1.5942 -1.6030 39 1 0.7832 -2.1448 2.0673 40 1 1.4503 -2.5763 0.4744 41 1 2.4965 -2.6024 1.9142 42 1 2.1227 -1.6762 4.7817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330501638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:46 Heat of formation + Delta-G solvation = -30.320980 kcal Electronic energy + Delta-G solvation = -23655.100161 eV Core-core repulsion = 20250.692224 eV Total energy + Delta-G solvation = -3404.407937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25390 -39.18136 -37.20094 -35.28536 -33.62998 -33.00057 -31.76529 -30.80034 -28.95015 -25.92055 -25.49238 -24.67214 -23.76102 -22.17438 -20.82553 -19.92800 -18.86253 -18.04641 -17.01545 -16.25840 -15.82289 -15.48155 -14.99442 -14.88202 -14.62473 -14.36010 -13.86814 -13.71781 -13.69836 -13.20404 -12.77202 -12.60416 -12.44558 -12.20766 -11.60631 -11.33473 -11.28564 -11.05727 -10.91137 -10.82223 -10.72004 -10.65796 -10.54702 -10.21769 -10.10408 -9.99920 -9.92571 -9.77633 -8.93326 -8.41534 -8.29162 -6.71139 -5.66408 -3.08410 2.05917 2.98212 3.35391 3.42802 3.49833 3.51639 3.54893 4.23155 4.55350 4.62140 4.75990 4.88390 5.02421 5.25220 5.26931 5.42221 5.46640 5.51994 5.61857 5.71807 5.76048 5.81994 5.83372 5.95023 6.01944 6.07047 6.12550 6.23049 6.37384 6.46105 6.57913 6.85790 6.93541 7.11138 7.60547 7.78879 7.86654 7.91725 8.05076 8.42649 8.88426 9.28932 9.92296 10.40692 11.38194 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.004846 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.024431 B = 5776.879579 C = 6265.333488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 H 0.084 0.916 4 C 0.498 3.502 5 O -0.524 6.524 6 N -0.624 5.624 7 C 0.107 3.893 8 C -0.132 4.132 9 C -0.106 4.106 10 C -0.038 4.038 11 H 0.101 0.899 12 C 0.374 3.626 13 N -0.742 5.742 14 O -0.528 6.528 15 C 0.129 3.871 16 N -0.573 5.573 17 C 0.167 3.833 18 C -0.260 4.260 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.337 0.663 36 H 0.395 0.605 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.023 0.977 40 H 0.015 0.985 41 H 0.038 0.962 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 9.125 -18.792 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 H 0.102 0.898 4 C 0.286 3.714 5 O -0.398 6.398 6 N -0.361 5.361 7 C -0.016 4.016 8 C -0.170 4.170 9 C -0.145 4.145 10 C -0.058 4.058 11 H 0.120 0.880 12 C 0.144 3.856 13 N -0.386 5.386 14 O -0.322 6.322 15 C 0.005 3.995 16 N -0.293 5.293 17 C 0.023 3.977 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.429 7.414 -18.247 19.845 hybrid contribution 0.630 1.944 0.220 2.055 sum -1.799 9.358 -18.027 20.391 Atomic orbital electron populations 1.22313 0.96113 1.02062 1.01320 1.20216 0.93556 0.95688 0.85855 0.89836 1.22814 0.78023 0.86177 0.84400 1.90608 1.40591 1.23017 1.85577 1.48441 1.62410 1.19090 1.06113 1.21414 0.98152 0.96140 0.85884 1.21839 0.99275 0.95432 1.00487 1.21517 1.01324 0.96664 0.94948 1.20428 0.99527 0.86924 0.98963 0.88040 1.24525 0.86600 0.87871 0.86640 1.69613 1.07731 1.34611 1.26685 1.84872 1.42477 1.19402 1.85497 1.21602 0.95040 0.82067 1.00809 1.43670 1.57964 1.08511 1.19169 1.20751 0.99085 0.82832 0.95064 1.19133 1.20203 1.09470 0.90155 0.91536 1.24870 0.98287 0.99825 0.96295 1.70124 1.33291 1.35393 1.15514 0.86372 0.82967 0.77962 0.79472 1.20981 1.21627 1.21121 0.93133 0.92850 0.91489 0.89026 0.92079 0.90515 0.91170 0.91021 0.91300 0.84465 0.75098 0.89619 0.88771 0.95839 0.96692 0.94348 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.85 37.16 0.33 -2.59 16 2 C 0.16 3.38 2.27 -69.08 -0.16 3.22 16 3 H 0.08 1.68 6.83 -51.93 -0.35 1.32 16 4 C 0.50 9.98 6.83 -10.98 -0.08 9.90 16 5 O -0.52 -12.50 13.68 5.56 0.08 -12.42 16 6 N -0.62 -9.43 2.98 -173.02 -0.52 -9.94 16 7 C 0.11 1.37 6.41 -3.93 -0.03 1.34 16 8 C -0.13 -1.32 6.07 -26.83 -0.16 -1.48 16 9 C -0.11 -0.97 5.15 -26.69 -0.14 -1.11 16 10 C -0.04 -0.40 2.78 -91.66 -0.25 -0.66 16 11 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.37 3.61 7.36 -13.45 -0.10 3.51 16 13 N -0.74 -7.21 12.75 32.47 0.41 -6.80 16 14 O -0.53 -4.33 13.58 -16.50 -0.22 -4.55 16 15 C 0.13 1.61 3.89 -3.72 -0.01 1.60 16 16 N -0.57 -15.14 2.64 -174.81 -0.46 -15.60 16 17 C 0.17 4.51 7.49 59.85 0.45 4.96 16 18 C -0.26 -7.39 9.59 -15.06 -0.14 -7.54 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C 0.01 0.18 4.98 -17.43 -0.09 0.09 16 21 N -0.90 -26.96 10.87 55.49 0.60 -26.36 16 22 Si 0.90 22.43 29.59 -169.99 -5.03 17.39 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H 0.05 0.76 5.97 -51.93 -0.31 0.45 16 27 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.34 2.50 8.56 -40.82 -0.35 2.15 16 36 H 0.39 1.44 8.70 45.56 0.40 1.83 16 37 H 0.09 1.05 7.60 -51.93 -0.39 0.65 16 38 H 0.09 1.27 4.96 -51.93 -0.26 1.01 16 39 H 0.02 0.66 7.43 -51.93 -0.39 0.28 16 40 H 0.01 0.38 6.18 -51.93 -0.32 0.06 16 41 H 0.04 1.12 7.26 -51.93 -0.38 0.75 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -34.54 330.34 -6.16 -40.70 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.62 Total: 1.34 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -0.38 Total: 11.26 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.04 Total: -58.70 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.15 Total: -16.97 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.54 -6.16 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330501638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.375 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds