Wall clock time and date at job start Tue Mar 31 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46681 * 2 1 4 4 C 1.50696 * 109.47664 * 120.00238 * 2 1 3 5 5 O 1.21282 * 119.99970 * 111.50129 * 4 2 1 6 6 N 1.34772 * 119.99973 * 291.51265 * 4 2 1 7 7 C 1.46926 * 120.63248 * 176.06776 * 6 4 2 8 8 C 1.53198 * 108.89221 * 126.45865 * 7 6 4 9 9 C 1.53044 * 109.31450 * 54.56720 * 8 7 6 10 10 C 1.53041 * 109.53563 * 298.63475 * 9 8 7 11 11 H 1.09002 * 109.49897 * 301.41797 * 10 9 8 12 12 C 1.50699 * 109.49637 * 181.34956 * 10 9 8 13 13 N 1.29036 * 120.00239 * 334.99534 * 12 10 9 14 14 O 1.34919 * 120.00087 * 155.00254 * 12 10 9 15 15 C 1.46968 * 120.65522 * 355.88332 * 6 4 2 16 16 N 1.46504 * 109.47400 * 240.00837 * 2 1 3 17 17 C 1.46498 * 119.99689 * 299.99564 * 16 2 1 18 18 C 1.36934 * 120.00174 * 119.99360 * 16 2 1 19 19 H 1.08001 * 120.00328 * 21.70071 * 18 16 2 20 20 C 1.38815 * 120.00120 * 201.69231 * 18 16 2 21 21 N 1.31619 * 119.99924 * 19.91290 * 20 18 16 22 22 Si 1.86797 * 120.00068 * 199.91197 * 20 18 16 23 23 H 1.48502 * 109.47168 * 60.00229 * 22 20 18 24 24 H 1.48506 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47191 * 300.00095 * 22 20 18 26 26 H 1.09002 * 109.46440 * 183.96067 * 1 2 3 27 27 H 1.08992 * 109.47537 * 303.96306 * 1 2 3 28 28 H 1.09001 * 109.47396 * 63.96730 * 1 2 3 29 29 H 1.09003 * 109.58761 * 6.60443 * 7 6 4 30 30 H 1.08993 * 109.58900 * 246.31497 * 7 6 4 31 31 H 1.09001 * 109.49724 * 174.51561 * 8 7 6 32 32 H 1.09005 * 109.49868 * 294.61223 * 8 7 6 33 33 H 1.08998 * 109.45668 * 58.65102 * 9 8 7 34 34 H 1.08996 * 109.46012 * 178.61363 * 9 8 7 35 35 H 0.96995 * 120.00388 * 180.02562 * 13 12 10 36 36 H 0.96699 * 114.00547 * 179.97438 * 14 12 10 37 37 H 1.08991 * 109.46715 * 113.75547 * 15 6 4 38 38 H 1.09004 * 109.70753 * 353.46718 * 15 6 4 39 39 H 1.09005 * 109.47178 * 92.92058 * 17 16 2 40 40 H 1.08998 * 109.46948 * 212.92089 * 17 16 2 41 41 H 1.09003 * 109.47198 * 332.91910 * 17 16 2 42 42 H 0.96995 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.5976 -1.7784 1.1256 6 7 1.8536 -0.1591 2.4471 7 6 2.2604 -0.8783 3.6620 8 6 3.1807 0.0254 4.4886 9 6 2.4767 1.3582 4.7535 10 6 2.1833 2.0553 3.4230 11 1 3.1163 2.2156 2.8827 12 6 1.5199 3.3826 3.6862 13 7 0.8605 3.5688 4.7796 14 8 1.6153 4.3762 2.7784 15 6 1.2517 1.1746 2.5843 16 7 2.0184 -0.6904 -1.1963 17 6 1.6646 -2.0930 -1.4282 18 6 2.8056 -0.0248 -2.0976 19 1 3.3523 0.8547 -1.7911 20 6 2.9010 -0.4805 -3.4053 21 7 1.9752 -1.2788 -3.8933 22 14 4.3433 0.0391 -4.4726 23 1 5.6116 -0.4088 -3.8432 24 1 4.2121 -0.5783 -5.8168 25 1 4.3524 1.5181 -4.6066 26 1 -0.3632 -1.0253 0.0710 27 1 -0.3634 0.5741 0.8523 28 1 -0.3634 0.4510 -0.9234 29 1 2.7933 -1.7884 3.3867 30 1 1.3778 -1.1346 4.2478 31 1 3.4103 -0.4595 5.4374 32 1 4.1044 0.2049 3.9384 33 1 1.5410 1.1759 5.2820 34 1 3.1196 1.9938 5.3624 35 1 0.4332 4.4230 4.9488 36 1 1.1577 5.1885 3.0348 37 1 0.2856 1.0877 3.0812 38 1 1.1169 1.6203 1.5987 39 1 0.7662 -2.1442 -2.0435 40 1 2.4852 -2.5947 -1.9410 41 1 1.4790 -2.5837 -0.4727 42 1 2.0417 -1.5970 -4.8071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330501639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:49 Heat of formation + Delta-G solvation = -31.393553 kcal Electronic energy + Delta-G solvation = -23664.628178 eV Core-core repulsion = 20260.173730 eV Total energy + Delta-G solvation = -3404.454447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25627 -39.17697 -37.20959 -35.29778 -33.75901 -32.78983 -31.67966 -30.96401 -29.01637 -25.93584 -25.52532 -24.57485 -23.80472 -22.28239 -20.83165 -19.81929 -18.70694 -18.22517 -17.05699 -16.27254 -15.80635 -15.75896 -15.01975 -14.73826 -14.57067 -14.15968 -13.96952 -13.74688 -13.65224 -13.26125 -12.79000 -12.59048 -12.45697 -12.23120 -11.65626 -11.37861 -11.32770 -11.00692 -10.90867 -10.81691 -10.72131 -10.66254 -10.57215 -10.24177 -10.07270 -10.02121 -9.96944 -9.80211 -8.95386 -8.42884 -8.34446 -6.71701 -5.69249 -3.11368 2.02978 3.04769 3.31353 3.40083 3.46035 3.49157 3.52011 4.27442 4.54018 4.67752 4.76818 4.92286 5.01764 5.18931 5.25873 5.42607 5.45326 5.49053 5.56643 5.73847 5.77373 5.83718 5.90899 5.92355 5.96414 6.04541 6.11837 6.29611 6.30867 6.48986 6.53290 6.80795 6.89536 7.09408 7.55686 7.75211 7.83675 7.87455 8.05245 8.41109 8.84385 9.26518 9.89958 10.39130 11.35691 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.004903 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.140492 B = 5709.669511 C = 6278.520207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.086 0.914 4 C 0.499 3.501 5 O -0.523 6.523 6 N -0.621 5.621 7 C 0.107 3.893 8 C -0.135 4.135 9 C -0.096 4.096 10 C -0.038 4.038 11 H 0.102 0.898 12 C 0.375 3.625 13 N -0.745 5.745 14 O -0.525 6.525 15 C 0.123 3.877 16 N -0.572 5.572 17 C 0.164 3.836 18 C -0.262 4.262 19 H 0.067 0.933 20 C 0.008 3.992 21 N -0.897 5.897 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.336 0.664 36 H 0.395 0.605 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.022 0.978 40 H 0.038 0.962 41 H 0.017 0.983 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 8.911 17.505 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.104 0.896 4 C 0.286 3.714 5 O -0.396 6.396 6 N -0.358 5.358 7 C -0.016 4.016 8 C -0.174 4.174 9 C -0.133 4.133 10 C -0.058 4.058 11 H 0.120 0.880 12 C 0.144 3.856 13 N -0.390 5.390 14 O -0.318 6.318 15 C -0.002 4.002 16 N -0.292 5.292 17 C 0.020 3.980 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.191 4.191 21 N -0.541 5.541 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.249 0.751 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.446 7.240 17.483 19.080 hybrid contribution 0.333 1.866 -0.779 2.049 sum -2.113 9.106 16.703 19.141 Atomic orbital electron populations 1.22294 0.96223 1.01687 1.01430 1.20234 0.93455 0.95839 0.85914 0.89642 1.22829 0.77874 0.86313 0.84341 1.90609 1.41005 1.22559 1.85449 1.48382 1.63592 1.17488 1.06335 1.21515 0.98130 0.96190 0.85716 1.21962 0.99202 0.95814 1.00388 1.21384 1.01900 0.95563 0.94491 1.20439 0.99406 0.86577 0.99421 0.88010 1.24536 0.88859 0.89550 0.82645 1.69613 1.18078 1.30589 1.20689 1.84921 1.73526 1.24663 1.48709 1.21635 0.94858 0.82724 1.00971 1.43655 1.57962 1.08392 1.19172 1.20763 0.98988 0.82925 0.95342 1.19117 1.19596 1.10896 0.89552 0.91555 1.24881 0.97991 1.00011 0.96233 1.70124 1.31698 1.37362 1.14871 0.86394 0.83091 0.77998 0.79432 1.21076 1.21637 1.20918 0.92954 0.93594 0.91230 0.89057 0.92029 0.90556 0.91395 0.90060 0.91610 0.84618 0.75094 0.91074 0.88446 0.96009 0.94354 0.96426 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.81 37.16 0.33 -2.49 16 2 C 0.16 3.30 2.27 -69.08 -0.16 3.14 16 3 H 0.09 1.69 6.76 -51.93 -0.35 1.34 16 4 C 0.50 9.84 6.84 -10.99 -0.08 9.77 16 5 O -0.52 -12.32 13.61 5.56 0.08 -12.24 16 6 N -0.62 -9.25 2.98 -172.74 -0.51 -9.76 16 7 C 0.11 1.37 6.43 -3.71 -0.02 1.35 16 8 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 9 C -0.10 -0.93 4.63 -26.69 -0.12 -1.05 16 10 C -0.04 -0.40 2.78 -91.65 -0.25 -0.66 16 11 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 12 C 0.37 3.63 7.36 -13.45 -0.10 3.53 16 13 N -0.74 -6.98 12.89 32.46 0.42 -6.56 16 14 O -0.52 -4.62 13.58 -16.48 -0.22 -4.84 16 15 C 0.12 1.49 4.37 -3.69 -0.02 1.47 16 16 N -0.57 -14.94 2.64 -174.81 -0.46 -15.40 16 17 C 0.16 4.39 7.64 59.85 0.46 4.85 16 18 C -0.26 -7.39 9.56 -15.06 -0.14 -7.53 16 19 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 20 C 0.01 0.23 4.93 -17.43 -0.09 0.15 16 21 N -0.90 -26.69 11.07 55.49 0.61 -26.08 16 22 Si 0.90 22.27 29.60 -169.99 -5.03 17.24 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.05 0.98 7.80 -51.93 -0.41 0.57 16 27 H 0.05 0.65 6.13 -51.93 -0.32 0.33 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.34 2.41 8.56 -40.82 -0.35 2.06 16 36 H 0.40 1.62 8.70 45.56 0.40 2.02 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.23 4.98 -51.93 -0.26 0.97 16 39 H 0.02 0.61 7.50 -51.93 -0.39 0.22 16 40 H 0.04 1.11 7.29 -51.93 -0.38 0.73 16 41 H 0.02 0.44 6.09 -51.93 -0.32 0.12 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -34.25 331.20 -6.14 -40.38 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.65 Total: 1.31 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.36 Total: 10.97 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.06 Total: -57.81 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.15 Total: -17.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.25 -6.14 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330501639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.989 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds