Wall clock time and date at job start Tue Mar 31 2020 02:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46681 * 2 1 4 4 C 1.50696 * 109.47664 * 120.00238 * 2 1 3 5 5 O 1.21282 * 119.99970 * 111.50129 * 4 2 1 6 6 N 1.34772 * 119.99973 * 291.51265 * 4 2 1 7 7 C 1.46926 * 120.63248 * 176.06776 * 6 4 2 8 8 C 1.53198 * 108.89221 * 126.45865 * 7 6 4 9 9 C 1.53044 * 109.31450 * 54.56720 * 8 7 6 10 10 C 1.53041 * 109.53563 * 298.63475 * 9 8 7 11 11 H 1.09002 * 109.49897 * 301.41797 * 10 9 8 12 12 C 1.50699 * 109.49637 * 181.34956 * 10 9 8 13 13 N 1.29036 * 120.00239 * 334.99534 * 12 10 9 14 14 O 1.34919 * 120.00087 * 155.00254 * 12 10 9 15 15 C 1.46968 * 120.65522 * 355.88332 * 6 4 2 16 16 N 1.46504 * 109.47400 * 240.00837 * 2 1 3 17 17 C 1.46498 * 119.99689 * 299.99564 * 16 2 1 18 18 C 1.36934 * 120.00174 * 119.99360 * 16 2 1 19 19 H 1.08001 * 120.00328 * 21.70071 * 18 16 2 20 20 C 1.38815 * 120.00120 * 201.69231 * 18 16 2 21 21 N 1.31619 * 119.99924 * 19.91290 * 20 18 16 22 22 Si 1.86797 * 120.00068 * 199.91197 * 20 18 16 23 23 H 1.48502 * 109.47168 * 60.00229 * 22 20 18 24 24 H 1.48506 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47191 * 300.00095 * 22 20 18 26 26 H 1.09002 * 109.46440 * 183.96067 * 1 2 3 27 27 H 1.08992 * 109.47537 * 303.96306 * 1 2 3 28 28 H 1.09001 * 109.47396 * 63.96730 * 1 2 3 29 29 H 1.09003 * 109.58761 * 6.60443 * 7 6 4 30 30 H 1.08993 * 109.58900 * 246.31497 * 7 6 4 31 31 H 1.09001 * 109.49724 * 174.51561 * 8 7 6 32 32 H 1.09005 * 109.49868 * 294.61223 * 8 7 6 33 33 H 1.08998 * 109.45668 * 58.65102 * 9 8 7 34 34 H 1.08996 * 109.46012 * 178.61363 * 9 8 7 35 35 H 0.96995 * 120.00388 * 180.02562 * 13 12 10 36 36 H 0.96699 * 114.00547 * 179.97438 * 14 12 10 37 37 H 1.08991 * 109.46715 * 113.75547 * 15 6 4 38 38 H 1.09004 * 109.70753 * 353.46718 * 15 6 4 39 39 H 1.09005 * 109.47178 * 92.92058 * 17 16 2 40 40 H 1.08998 * 109.46948 * 212.92089 * 17 16 2 41 41 H 1.09003 * 109.47198 * 332.91910 * 17 16 2 42 42 H 0.96995 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.5976 -1.7784 1.1256 6 7 1.8536 -0.1591 2.4471 7 6 2.2604 -0.8783 3.6620 8 6 3.1807 0.0254 4.4886 9 6 2.4767 1.3582 4.7535 10 6 2.1833 2.0553 3.4230 11 1 3.1163 2.2156 2.8827 12 6 1.5199 3.3826 3.6862 13 7 0.8605 3.5688 4.7796 14 8 1.6153 4.3762 2.7784 15 6 1.2517 1.1746 2.5843 16 7 2.0184 -0.6904 -1.1963 17 6 1.6646 -2.0930 -1.4282 18 6 2.8056 -0.0248 -2.0976 19 1 3.3523 0.8547 -1.7911 20 6 2.9010 -0.4805 -3.4053 21 7 1.9752 -1.2788 -3.8933 22 14 4.3433 0.0391 -4.4726 23 1 5.6116 -0.4088 -3.8432 24 1 4.2121 -0.5783 -5.8168 25 1 4.3524 1.5181 -4.6066 26 1 -0.3632 -1.0253 0.0710 27 1 -0.3634 0.5741 0.8523 28 1 -0.3634 0.4510 -0.9234 29 1 2.7933 -1.7884 3.3867 30 1 1.3778 -1.1346 4.2478 31 1 3.4103 -0.4595 5.4374 32 1 4.1044 0.2049 3.9384 33 1 1.5410 1.1759 5.2820 34 1 3.1196 1.9938 5.3624 35 1 0.4332 4.4230 4.9488 36 1 1.1577 5.1885 3.0348 37 1 0.2856 1.0877 3.0812 38 1 1.1169 1.6203 1.5987 39 1 0.7662 -2.1442 -2.0435 40 1 2.4852 -2.5947 -1.9410 41 1 1.4790 -2.5837 -0.4727 42 1 2.0417 -1.5970 -4.8071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330501639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:48 Heat of formation + Delta-G solvation = -59.133129 kcal Electronic energy + Delta-G solvation = -23665.831056 eV Core-core repulsion = 20260.173730 eV Total energy + Delta-G solvation = -3405.657326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44805 -40.13925 -38.40535 -37.13911 -34.77786 -34.20193 -33.13705 -31.96666 -30.78534 -28.01547 -26.81372 -25.54848 -25.41626 -23.64896 -22.10195 -20.79949 -19.89535 -19.08022 -18.95810 -17.86113 -17.14938 -16.79451 -16.46301 -16.09681 -15.77923 -15.50092 -15.27040 -14.95074 -14.70738 -14.60488 -14.31171 -14.12233 -13.82023 -13.55774 -13.15043 -13.00097 -12.85204 -12.64259 -12.39330 -12.33630 -12.19458 -12.06639 -11.89366 -11.84741 -11.77867 -11.60983 -10.80435 -10.76763 -10.65799 -10.40148 -9.58799 -8.80878 -7.84465 -5.29409 1.28257 1.45303 1.50623 1.56410 1.77108 2.01298 2.50586 2.60460 3.28775 3.53587 3.60613 3.68988 3.88789 3.99073 4.07351 4.19323 4.27298 4.29339 4.42212 4.53678 4.60175 4.78907 4.83222 4.90097 4.93799 4.98639 5.01003 5.05441 5.16101 5.21188 5.33688 5.36863 5.49800 5.58546 5.64257 5.68360 6.02493 6.27047 6.43253 7.10458 7.33711 7.44354 7.83396 8.28802 9.19573 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.004903 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.140492 B = 5709.669511 C = 6278.520207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.151 3.849 3 H 0.096 0.904 4 C 0.500 3.500 5 O -0.571 6.571 6 N -0.609 5.609 7 C 0.103 3.897 8 C -0.127 4.127 9 C -0.087 4.087 10 C -0.037 4.037 11 H 0.092 0.908 12 C 0.375 3.625 13 N -0.747 5.747 14 O -0.535 6.535 15 C 0.119 3.881 16 N -0.591 5.591 17 C 0.190 3.810 18 C -0.273 4.273 19 H 0.072 0.928 20 C -0.046 4.046 21 N -0.930 5.930 22 Si 0.966 3.034 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.267 1.267 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.348 0.652 36 H 0.414 0.586 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.026 0.974 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 10.967 19.689 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 H 0.113 0.887 4 C 0.288 3.712 5 O -0.449 6.449 6 N -0.344 5.344 7 C -0.019 4.019 8 C -0.165 4.165 9 C -0.124 4.124 10 C -0.057 4.057 11 H 0.110 0.890 12 C 0.144 3.856 13 N -0.394 5.394 14 O -0.331 6.331 15 C -0.005 4.005 16 N -0.312 5.312 17 C 0.045 3.955 18 C -0.403 4.403 19 H 0.090 0.910 20 C -0.242 4.242 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.193 1.193 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.167 0.833 36 H 0.272 0.728 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.045 0.955 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.712 9.386 19.750 22.034 hybrid contribution 0.363 1.317 -1.300 1.886 sum -2.349 10.703 18.450 21.459 Atomic orbital electron populations 1.22132 0.93879 1.01626 1.02614 1.20503 0.95100 0.95869 0.84509 0.88656 1.22306 0.77672 0.85682 0.85529 1.90591 1.43395 1.24544 1.86351 1.48240 1.62188 1.18399 1.05537 1.21718 0.99457 0.95690 0.84995 1.21910 0.97916 0.95893 1.00760 1.21324 1.02134 0.95003 0.93983 1.20330 0.98670 0.87214 0.99535 0.88977 1.24178 0.89055 0.89383 0.82965 1.69579 1.17812 1.31611 1.20400 1.84882 1.73959 1.25587 1.48716 1.21826 0.95967 0.81239 1.01441 1.43802 1.58583 1.08186 1.20663 1.20357 0.96611 0.83792 0.94786 1.19486 1.19788 1.10929 0.90054 0.90992 1.25682 1.00280 1.00640 0.97642 1.70263 1.33347 1.38976 1.14957 0.85370 0.79578 0.78334 0.77366 1.21275 1.21851 1.19271 0.94065 0.89279 0.92608 0.91457 0.89697 0.88092 0.92726 0.89609 0.90666 0.83281 0.72825 0.89061 0.88950 0.97915 0.97794 0.95512 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.81 71.98 0.63 -4.36 16 2 C 0.15 6.24 2.27 44.24 0.10 6.34 16 3 H 0.10 3.69 6.76 -2.39 -0.02 3.67 16 4 C 0.50 19.61 6.84 87.66 0.60 20.21 16 5 O -0.57 -27.44 13.61 -3.04 -0.04 -27.48 16 6 N -0.61 -17.16 2.98 -818.80 -2.44 -19.60 16 7 C 0.10 2.46 6.43 86.36 0.56 3.01 16 8 C -0.13 -2.28 6.08 30.68 0.19 -2.10 16 9 C -0.09 -1.41 4.63 30.62 0.14 -1.27 16 10 C -0.04 -0.69 2.78 -11.46 -0.03 -0.72 16 11 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 12 C 0.38 6.12 7.36 88.52 0.65 6.78 16 13 N -0.75 -11.45 12.89 -166.07 -2.14 -13.59 16 14 O -0.53 -7.93 13.58 -81.88 -1.11 -9.05 16 15 C 0.12 2.55 4.37 86.36 0.38 2.93 16 16 N -0.59 -31.50 2.64 -706.97 -1.87 -33.37 16 17 C 0.19 10.54 7.64 127.77 0.98 11.52 16 18 C -0.27 -15.57 9.56 84.03 0.80 -14.76 16 19 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 20 C -0.05 -2.69 4.93 84.86 0.42 -2.27 16 21 N -0.93 -56.92 11.07 21.65 0.24 -56.68 16 22 Si 0.97 46.35 29.60 68.60 2.03 48.38 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H 0.04 1.52 7.80 -2.39 -0.02 1.50 16 27 H 0.09 2.29 6.13 -2.39 -0.01 2.28 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.97 7.00 -2.39 -0.02 1.95 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.09 1.38 7.85 -2.39 -0.02 1.36 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.35 3.82 8.56 -92.71 -0.79 3.03 16 36 H 0.41 2.19 8.70 -74.06 -0.64 1.55 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.10 4.98 -2.38 -0.01 2.09 16 39 H 0.00 0.16 7.50 -2.38 -0.02 0.14 16 40 H 0.00 0.20 7.29 -2.39 -0.02 0.18 16 41 H 0.03 1.40 6.09 -2.39 -0.01 1.39 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -75.53 331.20 -0.31 -75.84 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -0.39 Total: 10.25 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 5.41 Total: 25.30 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -6.21 Total: -123.24 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.15 Total: -36.53 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.53 -0.31 -75.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330501639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.709 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds