Wall clock time and date at job start Tue Mar 31 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00082 * 2 1 4 4 C 1.53006 * 109.47312 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47219 * 64.99676 * 4 3 2 6 6 C 1.36771 * 126.01735 * 270.04100 * 5 4 3 7 7 O 1.35099 * 122.89069 * 355.18993 * 6 5 4 8 8 N 1.29492 * 114.21206 * 175.18602 * 6 5 4 9 9 C 1.46307 * 109.10000 * 359.10925 * 8 6 5 10 10 H 1.09004 * 105.24202 * 253.90798 * 9 8 6 11 11 C 1.49715 * 113.81604 * 137.64728 * 9 8 6 12 12 N 1.46328 * 113.36266 * 266.60141 * 11 9 8 13 13 C 1.46897 * 110.99930 * 180.73417 * 12 11 9 14 14 C 1.50699 * 109.47203 * 65.38894 * 13 12 11 15 15 H 1.07993 * 119.99928 * 354.66564 * 14 13 12 16 16 C 1.37881 * 119.99794 * 174.93692 * 14 13 12 17 17 N 1.31514 * 120.00038 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99732 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47455 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47152 * 120.00164 * 18 16 14 21 21 H 1.48503 * 109.47276 * 239.99875 * 18 16 14 22 22 C 1.47308 * 109.26046 * 303.47153 * 12 11 9 23 23 C 1.52323 * 108.03823 * 70.13269 * 22 12 11 24 24 C 1.48345 * 126.01816 * 89.99943 * 5 4 3 25 25 H 1.09001 * 110.01729 * 304.91177 * 24 5 4 26 26 H 1.09004 * 109.46977 * 299.99982 * 1 2 3 27 27 H 1.09002 * 109.47233 * 60.00538 * 1 2 3 28 28 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47612 * 59.99805 * 3 2 1 30 30 H 1.09003 * 109.46675 * 299.99483 * 3 2 1 31 31 H 1.08998 * 109.46890 * 304.99203 * 4 3 2 32 32 H 1.09002 * 109.47143 * 184.99774 * 4 3 2 33 33 H 0.96697 * 113.99652 * 179.97438 * 7 6 5 34 34 H 1.08995 * 108.70825 * 145.59441 * 11 9 8 35 35 H 1.08998 * 108.60016 * 27.52451 * 11 9 8 36 36 H 1.09001 * 109.47067 * 305.38814 * 13 12 11 37 37 H 1.09002 * 109.47082 * 185.39161 * 13 12 11 38 38 H 0.96994 * 119.99807 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.74324 * 189.77060 * 22 12 11 40 40 H 1.08996 * 109.74810 * 310.49576 * 22 12 11 41 41 H 1.08993 * 108.90041 * 181.40671 * 23 22 12 42 42 H 1.09005 * 108.81768 * 62.85303 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1377 -0.7757 -1.4728 7 8 3.9924 -1.7019 -0.5000 8 7 4.4422 -1.0803 -2.6940 9 6 4.5006 0.1443 -3.4925 10 1 3.5992 0.1301 -4.1053 11 6 5.6588 0.1935 -4.4400 12 7 6.8340 0.8661 -3.8853 13 6 7.9308 0.9003 -4.8619 14 6 7.5314 1.7563 -6.0361 15 1 6.5304 2.1572 -6.0964 16 6 8.4423 2.0231 -7.0362 17 7 9.6595 1.5301 -6.9656 18 14 7.9470 3.0836 -8.4920 19 1 6.5336 3.5112 -8.3349 20 1 8.8223 4.2817 -8.5522 21 1 8.0915 2.3015 -9.7461 22 6 6.4607 2.2271 -3.4628 23 6 5.5638 2.1110 -2.2371 24 6 4.3235 1.2791 -2.5052 25 1 3.4943 1.9156 -2.8141 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8515 0.5683 0.8410 32 1 3.9785 2.1765 0.0889 33 1 4.1357 -2.6107 -0.7976 34 1 5.3493 0.7188 -5.3434 35 1 5.9335 -0.8270 -4.7065 36 1 8.1428 -0.1121 -5.2057 37 1 8.8215 1.3189 -4.3934 38 1 10.3004 1.7181 -7.6690 39 1 7.3573 2.7934 -3.2108 40 1 5.9220 2.7277 -4.2672 41 1 5.2585 3.1103 -1.9271 42 1 6.1309 1.6489 -1.4289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330571663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:57 Heat of formation + Delta-G solvation = -29.759352 kcal Electronic energy + Delta-G solvation = -23457.730431 eV Core-core repulsion = 20053.346848 eV Total energy + Delta-G solvation = -3404.383583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68194 -38.05506 -37.72779 -36.06477 -33.70692 -32.74990 -31.30576 -29.53858 -28.48413 -26.64699 -26.31219 -24.11281 -22.94552 -22.54036 -21.26585 -20.39099 -18.78587 -17.46158 -16.76099 -16.39650 -16.07084 -15.90057 -15.54586 -15.16064 -14.97429 -14.47620 -13.99694 -13.81872 -13.42286 -13.22148 -12.86236 -12.71743 -12.50301 -12.30772 -12.08434 -11.79322 -11.38116 -11.30178 -11.12369 -10.84235 -10.80396 -10.57587 -10.40320 -10.15534 -9.87262 -9.86135 -9.72501 -9.57840 -9.29266 -8.41589 -7.58791 -7.12975 -6.00405 -4.09825 2.67472 3.01679 3.27279 3.35515 3.38311 3.61057 4.27053 4.41759 4.76788 4.80582 4.84162 4.98147 5.09010 5.12322 5.16158 5.20786 5.27003 5.29795 5.43365 5.45214 5.58099 5.73251 5.80844 5.94141 6.08695 6.19841 6.28399 6.45865 6.52673 6.70535 6.81778 6.88836 6.98920 7.11699 7.33816 7.56418 7.86926 7.93288 8.09557 8.32486 8.34161 8.42994 9.01218 9.56938 11.04493 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.003922 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.882239 B = 7137.133664 C = 7343.035325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.040 3.960 4 C 0.145 3.855 5 N -0.626 5.626 6 C 0.551 3.449 7 O -0.467 6.467 8 N -0.613 5.613 9 C 0.089 3.911 10 H 0.057 0.943 11 C 0.078 3.922 12 N -0.529 5.529 13 C 0.186 3.814 14 C -0.549 4.549 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.065 3.935 23 C -0.121 4.121 24 C 0.143 3.857 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.417 0.583 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.057 0.943 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 0.017 14.882 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.038 4.038 4 C 0.021 3.979 5 N -0.356 5.356 6 C 0.239 3.761 7 O -0.262 6.262 8 N -0.362 5.362 9 C -0.022 4.022 10 H 0.075 0.925 11 C -0.052 4.052 12 N -0.253 5.253 13 C 0.061 3.939 14 C -0.588 4.588 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.064 4.064 23 C -0.160 4.160 24 C 0.040 3.960 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.273 0.727 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.451 -0.675 15.177 21.669 hybrid contribution -0.877 1.581 -1.531 2.369 sum -16.328 0.905 13.646 21.298 Atomic orbital electron populations 1.22704 0.81593 1.02580 0.99524 1.88004 1.19076 1.27174 1.95267 1.23110 0.95162 0.85398 1.00132 1.21218 0.91265 0.99309 0.86069 1.48070 1.72355 1.02416 1.12760 1.20661 0.87641 0.81428 0.86394 1.84582 1.87556 1.19947 1.34084 1.74918 1.35618 1.25044 1.00631 1.20875 0.99338 0.87248 0.94771 0.92528 1.21020 0.89643 1.00550 0.93957 1.63005 1.07266 1.14459 1.40572 1.19775 0.88886 0.96996 0.88286 1.21796 0.98180 1.32196 1.06615 0.92401 1.24968 0.94887 0.95835 0.98112 1.69956 1.04371 1.44716 1.33830 0.86602 0.78573 0.80341 0.82857 1.19873 1.20996 1.20958 1.21779 0.97877 0.92252 0.94514 1.21609 0.95497 0.98305 1.00594 1.21566 0.97151 0.94196 0.83077 0.90670 0.94398 0.94420 0.89808 0.92648 0.93311 0.89568 0.89033 0.72749 0.93867 0.90538 0.95393 0.94632 0.92882 0.90951 0.94257 0.92452 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.40 10.47 -35.23 -0.37 -4.77 16 3 C 0.04 0.39 6.28 37.16 0.23 0.62 16 4 C 0.15 1.53 6.37 -4.04 -0.03 1.51 16 5 N -0.63 -8.74 2.50 -169.24 -0.42 -9.17 16 6 C 0.55 8.63 8.58 -89.60 -0.77 7.87 16 7 O -0.47 -6.14 13.28 -17.00 -0.23 -6.36 16 8 N -0.61 -10.97 11.40 -58.80 -0.67 -11.64 16 9 C 0.09 1.58 3.39 -70.44 -0.24 1.35 16 10 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 11 C 0.08 1.61 4.87 -5.76 -0.03 1.58 16 12 N -0.53 -11.69 4.98 -238.69 -1.19 -12.88 16 13 C 0.19 4.87 5.13 -4.98 -0.03 4.84 16 14 C -0.55 -15.01 7.68 -34.44 -0.26 -15.27 16 15 H 0.06 1.56 5.74 -52.49 -0.30 1.26 16 16 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C 0.07 1.25 4.88 -3.95 -0.02 1.23 16 23 C -0.12 -1.86 5.35 -27.72 -0.15 -2.00 16 24 C 0.14 2.17 3.75 -68.33 -0.26 1.91 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.92 7.97 -51.93 -0.41 0.51 16 32 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 33 H 0.42 3.95 9.03 45.56 0.41 4.36 16 34 H 0.04 0.94 6.57 -51.93 -0.34 0.60 16 35 H 0.08 1.70 8.06 -51.93 -0.42 1.28 16 36 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.07 1.43 8.06 -51.93 -0.42 1.02 16 40 H 0.04 0.79 6.80 -51.93 -0.35 0.44 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.16 7.91 -51.93 -0.41 0.75 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -32.47 337.25 -8.62 -41.10 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.02 Total: 1.12 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.53 Total: 6.74 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -1.55 Total: -59.22 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.59 Total: -11.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.47 -8.62 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330571663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.336 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds