Wall clock time and date at job start Tue Mar 31 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 120.00108 * 2 1 4 4 O 1.21287 * 119.99729 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00417 * 180.02562 * 3 2 1 6 6 N 1.46897 * 109.47428 * 179.97438 * 5 3 2 7 7 C 1.46897 * 111.00156 * 169.99915 * 6 5 3 8 8 C 1.53241 * 109.33973 * 187.25232 * 7 6 5 9 9 N 1.47075 * 108.52064 * 306.17201 * 8 7 6 10 10 C 1.34780 * 120.87669 * 231.18923 * 9 8 7 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 C 1.47074 * 118.24014 * 51.45789 * 9 8 7 23 23 C 1.46904 * 110.99901 * 294.29982 * 6 5 3 24 24 H 1.09003 * 109.47490 * 300.00209 * 1 2 3 25 25 H 1.09001 * 109.47147 * 60.00437 * 1 2 3 26 26 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00395 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46875 * 59.99371 * 5 3 2 29 29 H 1.08997 * 109.46849 * 300.00140 * 5 3 2 30 30 H 1.09001 * 109.49120 * 67.28868 * 7 6 5 31 31 H 1.09003 * 109.48945 * 307.21315 * 7 6 5 32 32 H 1.09003 * 109.62612 * 186.45868 * 8 7 6 33 33 H 1.09003 * 109.62821 * 65.87958 * 8 7 6 34 34 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 35 35 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 36 36 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 37 37 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 38 38 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.63016 * 68.25422 * 22 9 8 40 40 H 1.09001 * 109.62513 * 188.83332 * 22 9 8 41 41 H 1.08997 * 109.49121 * 292.70801 * 23 6 5 42 42 H 1.08999 * 109.49142 * 52.78600 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 -0.0006 6 7 4.1355 2.5522 -0.0011 7 6 5.5844 2.5985 0.2365 8 6 6.0242 4.0563 0.4088 9 7 5.5601 4.8250 -0.7560 10 6 6.4100 5.6046 -1.4535 11 8 7.5744 5.6795 -1.1228 12 6 5.9131 6.3843 -2.6435 13 6 7.0696 7.1813 -3.2502 14 6 6.5729 7.9605 -4.4406 15 1 5.5359 7.8942 -4.7348 16 6 7.4420 8.7588 -5.1535 17 7 8.7048 8.8398 -4.7949 18 14 6.8265 9.7241 -6.6296 19 1 5.3777 9.4620 -6.8231 20 1 7.0397 11.1750 -6.3961 21 1 7.5725 9.3031 -7.8425 22 6 4.1428 4.7251 -1.1360 23 6 3.7784 3.2364 -1.2511 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 4.0088 0.6536 -0.8907 29 1 4.0095 0.6533 0.8891 30 1 6.1065 2.1590 -0.6134 31 1 5.8229 2.0374 1.1401 32 1 7.1113 4.1059 0.4708 33 1 5.5836 4.4667 1.3174 34 1 5.5157 5.6955 -3.3890 35 1 5.1270 7.0696 -2.3265 36 1 7.4667 7.8702 -2.5046 37 1 7.8560 6.4964 -3.5672 38 1 9.3162 9.4018 -5.2963 39 1 3.5249 5.1986 -0.3731 40 1 3.9855 5.2172 -2.0958 41 1 4.3257 2.7881 -2.0802 42 1 2.7071 3.1380 -1.4263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330887235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:32 Heat of formation + Delta-G solvation = -61.316942 kcal Electronic energy + Delta-G solvation = -22416.630080 eV Core-core repulsion = 19010.878058 eV Total energy + Delta-G solvation = -3405.752023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36607 -39.47075 -37.57452 -34.93361 -34.34474 -33.47595 -31.57658 -30.54136 -29.67936 -27.20146 -25.75460 -24.45898 -23.70846 -21.89258 -20.84558 -20.47124 -18.41500 -17.60950 -17.10427 -16.41319 -16.02047 -15.77683 -15.32746 -15.23361 -14.97124 -14.74530 -14.60495 -14.35914 -13.72173 -13.51740 -13.16700 -13.05676 -12.68021 -12.31467 -12.23645 -12.03214 -11.90952 -11.42898 -11.30963 -11.22247 -10.99550 -10.91958 -10.53739 -10.06942 -9.92177 -9.57480 -9.50350 -9.12190 -8.93554 -8.70224 -8.31159 -8.22925 -5.93130 -3.97203 2.33724 2.71055 3.26924 3.31491 3.34795 3.41953 3.45657 3.74432 4.38773 4.49779 4.71510 4.79918 4.88326 4.88579 4.95042 5.11739 5.20576 5.22899 5.33128 5.40671 5.41835 5.46542 5.52803 5.75667 5.85192 5.92728 6.02003 6.07438 6.25502 6.28107 6.59738 6.74123 6.83592 6.96607 7.10660 7.78295 7.83217 7.90311 7.92007 8.10764 8.42288 8.79959 9.11581 9.66173 11.17923 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.003116 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.268661 B = 8982.776964 C = 9815.198943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.741 5.741 3 C 0.511 3.489 4 O -0.515 6.515 5 C 0.036 3.964 6 N -0.521 5.521 7 C 0.044 3.956 8 C 0.117 3.883 9 N -0.628 5.628 10 C 0.513 3.487 11 O -0.536 6.536 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.118 3.882 23 C 0.036 3.964 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.401 0.599 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 -21.800 11.269 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.395 5.395 3 C 0.297 3.703 4 O -0.390 6.390 5 C -0.095 4.095 6 N -0.246 5.246 7 C -0.085 4.085 8 C -0.006 4.006 9 N -0.364 5.364 10 C 0.304 3.696 11 O -0.412 6.412 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.006 4.006 23 C -0.092 4.092 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.614 -20.614 11.767 27.874 hybrid contribution 0.204 -0.490 -1.419 1.515 sum -14.410 -21.104 10.347 27.570 Atomic orbital electron populations 1.21515 0.79474 1.02116 1.02452 1.45815 1.07849 1.08719 1.77067 1.20637 0.90037 0.83672 0.75975 1.90709 1.70011 1.30940 1.47306 1.21945 0.92242 0.92085 1.03242 1.61627 1.13751 1.12779 1.36476 1.22541 0.86615 0.98112 1.01192 1.21538 1.01037 0.89169 0.88893 1.48392 1.09853 1.47436 1.30763 1.21582 0.85490 0.78358 0.84200 1.90648 1.17648 1.63870 1.69035 1.21876 1.02867 0.98653 0.93434 1.18906 0.91556 0.94480 0.95114 1.21266 0.95653 1.26818 1.12589 0.92556 1.25032 0.94886 0.96877 0.97656 1.70017 1.03446 1.39358 1.40071 0.86536 0.78885 0.79846 0.82715 1.19726 1.21021 1.21055 1.21834 0.81471 0.95254 1.02013 1.22772 1.02591 0.94742 0.89068 0.92189 0.92193 0.90760 0.76614 0.91834 0.87739 0.94130 0.89702 0.88663 0.91252 0.90396 0.90208 0.95813 0.95906 0.93044 0.90680 0.88729 0.94614 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.84 0.64 1.11 16 2 N -0.74 -4.29 5.71 -67.08 -0.38 -4.67 16 3 C 0.51 4.70 7.49 -10.98 -0.08 4.62 16 4 O -0.52 -6.94 14.33 5.55 0.08 -6.86 16 5 C 0.04 0.28 5.45 -4.98 -0.03 0.25 16 6 N -0.52 -5.68 4.37 -235.47 -1.03 -6.71 16 7 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 8 C 0.12 1.59 6.60 -3.60 -0.02 1.57 16 9 N -0.63 -10.08 3.00 -172.19 -0.52 -10.60 16 10 C 0.51 10.53 7.71 -10.98 -0.08 10.45 16 11 O -0.54 -13.10 15.43 5.56 0.09 -13.02 16 12 C -0.13 -2.74 4.00 -27.88 -0.11 -2.85 16 13 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 14 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.12 1.59 6.53 -3.37 -0.02 1.57 16 23 C 0.04 0.44 5.27 -3.46 -0.02 0.42 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.40 1.03 8.83 -40.82 -0.36 0.67 16 28 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.10 0.56 7.97 -51.93 -0.41 0.15 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 32 H 0.10 1.42 7.06 -51.93 -0.37 1.05 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.52 7.67 -51.93 -0.40 1.12 16 35 H 0.08 1.58 7.99 -51.93 -0.41 1.16 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.25 6.02 -51.93 -0.31 0.93 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 1.26 5.76 -51.93 -0.30 0.96 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -37.49 341.86 -7.92 -45.41 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -6.74 Total: -3.12 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.28 Total: 4.57 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -1.19 Total: -49.09 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.17 Total: -19.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.49 -7.92 -45.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330887235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.910 kcal (2) G-P(sol) polarization free energy of solvation -37.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds