Wall clock time and date at job start Tue Mar 31 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99704 * 2 1 4 4 O 1.21290 * 119.99696 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47180 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.46901 * 180.02562 * 6 5 3 8 8 C 1.50707 * 109.46827 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00197 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99596 * 180.02562 * 8 7 6 11 11 C 1.46969 * 120.59184 * 179.97438 * 10 8 7 12 12 C 1.53365 * 108.63823 * 235.24762 * 11 10 8 13 13 N 1.46971 * 108.63406 * 310.57818 * 12 11 10 14 14 C 1.36933 * 120.58954 * 235.20080 * 13 12 11 15 15 H 1.08004 * 119.99676 * 151.84704 * 14 13 12 16 16 C 1.38804 * 120.00274 * 331.57456 * 14 13 12 17 17 N 1.31613 * 120.00257 * 342.82344 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 162.81945 * 16 14 13 19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46750 * 119.99895 * 18 16 14 21 21 H 1.48498 * 109.47076 * 239.99975 * 18 16 14 22 22 C 1.46964 * 118.81046 * 55.47559 * 13 12 11 23 23 C 1.46965 * 120.59893 * 0.02562 * 10 8 7 24 24 H 1.08994 * 109.47020 * 60.00593 * 1 2 3 25 25 H 1.08999 * 109.46361 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47308 * 299.99835 * 1 2 3 27 27 H 0.96997 * 120.00238 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46624 * 60.00667 * 5 3 2 29 29 H 1.08997 * 109.47017 * 300.00382 * 5 3 2 30 30 H 1.09000 * 109.47064 * 59.99950 * 6 5 3 31 31 H 1.09000 * 109.46630 * 300.00358 * 6 5 3 32 32 H 1.09008 * 109.47542 * 60.00199 * 7 6 5 33 33 H 1.08996 * 109.47528 * 300.00227 * 7 6 5 34 34 H 1.09001 * 109.60759 * 115.50025 * 11 10 8 35 35 H 1.08998 * 109.74755 * 355.07824 * 11 10 8 36 36 H 1.08993 * 109.61301 * 190.83327 * 12 11 10 37 37 H 1.09004 * 109.75220 * 70.40370 * 12 11 10 38 38 H 0.97004 * 120.00510 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.60931 * 64.27031 * 22 13 12 40 40 H 1.09004 * 109.60392 * 184.78099 * 22 13 12 41 41 H 1.09002 * 109.60509 * 244.49992 * 23 10 8 42 42 H 1.09000 * 109.60856 * 4.83277 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1558 2.6100 0.0011 7 6 5.6857 2.6100 0.0011 8 6 6.1879 4.0309 0.0009 9 8 5.3998 4.9527 0.0004 10 7 7.5130 4.2772 0.0003 11 6 8.0172 5.6577 -0.0004 12 6 8.9630 5.8335 -1.1948 13 7 9.9296 4.7264 -1.1953 14 6 11.2759 4.9768 -1.1968 15 1 11.9580 4.2649 -0.7558 16 6 11.7644 6.1427 -1.7700 17 7 11.0100 6.8361 -2.5961 18 14 13.4925 6.7279 -1.3690 19 1 14.1295 5.7777 -0.4220 20 1 14.2946 6.7946 -2.6170 21 1 13.4274 8.0760 -0.7497 22 6 9.4254 3.3460 -1.2003 23 6 8.4797 3.1702 -0.0007 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9501 -0.8400 -0.0004 28 1 4.0095 0.6534 -0.8893 29 1 4.0088 0.6537 0.8908 30 1 3.7920 3.1236 0.8911 31 1 3.7927 3.1239 -0.8889 32 1 6.0491 2.0965 -0.8892 33 1 6.0491 2.0959 0.8907 34 1 8.5582 5.8500 0.9262 35 1 7.1834 6.3543 -0.0883 36 1 9.4929 6.7818 -1.1054 37 1 8.3911 5.8202 -2.1226 38 1 11.3515 7.6508 -2.9970 39 1 8.8836 3.1578 -2.1271 40 1 10.2609 2.6512 -1.1144 41 1 9.0537 3.1850 0.9258 42 1 7.9496 2.2218 -0.0875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331292658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:48 Heat of formation + Delta-G solvation = -81.172091 kcal Electronic energy + Delta-G solvation = -22305.119584 eV Core-core repulsion = 18898.506577 eV Total energy + Delta-G solvation = -3406.613007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11215 -40.56537 -38.46908 -35.64629 -35.61715 -35.22763 -33.04654 -32.14110 -30.11148 -28.62939 -27.17597 -25.43081 -24.50697 -23.28278 -21.87419 -21.27087 -20.01688 -18.81665 -18.14148 -17.66618 -17.13003 -16.79578 -16.71077 -16.56551 -16.31609 -15.48541 -15.35262 -15.09274 -14.95300 -14.85830 -14.33819 -14.11221 -13.66738 -13.42186 -13.26462 -13.11734 -12.81552 -12.73930 -12.67213 -12.46629 -12.34590 -12.20150 -11.98996 -11.83515 -11.68597 -11.64339 -10.98166 -10.69650 -10.61054 -10.09930 -9.78114 -8.65312 -7.88078 -5.37105 1.47178 1.49857 1.59887 1.68776 1.71957 2.07851 2.40564 2.51826 3.26910 3.60339 3.62331 3.83013 4.09756 4.11126 4.27458 4.28766 4.41799 4.45472 4.57724 4.58803 4.62637 4.66131 4.69759 4.72682 4.80086 4.85230 4.95572 4.99796 5.08607 5.20373 5.28575 5.39558 5.47157 5.52242 5.62290 5.70643 6.35802 6.59991 6.61963 7.09388 7.26996 7.34573 7.79990 8.33302 9.17250 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.051339 B = 0.002799 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.260527 B =10000.438514 C =10253.344754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.724 5.724 3 C 0.499 3.501 4 O -0.598 6.598 5 C -0.128 4.128 6 C -0.085 4.085 7 C -0.125 4.125 8 C 0.497 3.503 9 O -0.602 6.602 10 N -0.605 5.605 11 C 0.101 3.899 12 C 0.171 3.829 13 N -0.610 5.610 14 C -0.258 4.258 15 H 0.079 0.921 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.969 3.031 19 H -0.260 1.260 20 H -0.295 1.295 21 H -0.294 1.294 22 C 0.122 3.878 23 C 0.098 3.902 24 H 0.042 0.958 25 H 0.113 0.887 26 H 0.044 0.956 27 H 0.422 0.578 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.066 0.934 37 H -0.011 1.011 38 H 0.249 0.751 39 H 0.017 0.983 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 -21.059 7.445 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.377 5.377 3 C 0.287 3.713 4 O -0.478 6.478 5 C -0.167 4.167 6 C -0.124 4.124 7 C -0.164 4.164 8 C 0.288 3.712 9 O -0.484 6.484 10 N -0.337 5.337 11 C -0.024 4.024 12 C 0.044 3.956 13 N -0.334 5.334 14 C -0.388 4.388 15 H 0.096 0.904 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.797 3.203 19 H -0.184 1.184 20 H -0.222 1.222 21 H -0.221 1.221 22 C -0.003 4.003 23 C -0.025 4.025 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.063 0.937 27 H 0.259 0.741 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.007 0.993 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.750 -19.757 7.371 25.174 hybrid contribution 0.916 1.046 -0.384 1.442 sum -12.834 -18.711 6.987 23.741 Atomic orbital electron populations 1.21629 0.79594 1.04099 1.00952 1.45771 1.08089 1.08872 1.74978 1.21456 0.91917 0.83345 0.74559 1.90735 1.71907 1.33689 1.51491 1.21687 0.89260 0.97916 1.07833 1.20944 0.93353 0.96205 1.01901 1.21737 0.96128 0.91203 1.07326 1.21696 0.81228 0.93456 0.74859 1.90657 1.56011 1.48775 1.52962 1.48223 1.06005 1.07694 1.71780 1.22018 0.97016 0.83814 0.99528 1.20840 0.89338 0.93242 0.92200 1.44294 1.02100 1.00971 1.86033 1.19620 0.83700 1.05488 1.30017 0.90388 1.25894 1.01556 1.00686 0.96892 1.70194 1.38800 1.18100 1.31454 0.85183 0.79892 0.77882 0.77317 1.18419 1.22197 1.22117 1.21628 0.96780 0.86513 0.95419 1.22527 0.90959 0.89502 0.99509 0.93869 0.86892 0.93700 0.74058 0.85337 0.84885 0.93576 0.94218 0.85888 0.84927 0.91822 0.91492 0.91574 0.99253 0.94156 0.96493 0.89881 0.90699 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.70 127.77 1.37 2.28 16 2 N -0.72 -8.14 5.71 -484.52 -2.77 -10.91 16 3 C 0.50 9.77 7.83 87.66 0.69 10.46 16 4 O -0.60 -19.26 15.98 -3.06 -0.05 -19.31 16 5 C -0.13 -1.58 5.70 29.85 0.17 -1.41 16 6 C -0.09 -1.97 3.79 30.59 0.12 -1.85 16 7 C -0.12 -2.44 4.04 29.85 0.12 -2.32 16 8 C 0.50 16.65 7.70 87.66 0.67 17.32 16 9 O -0.60 -26.33 15.39 -3.02 -0.05 -26.37 16 10 N -0.61 -20.92 2.95 -817.25 -2.41 -23.33 16 11 C 0.10 4.23 6.59 86.41 0.57 4.80 16 12 C 0.17 8.54 5.51 86.41 0.48 9.01 16 13 N -0.61 -29.55 2.96 -697.46 -2.06 -31.61 16 14 C -0.26 -13.57 9.57 84.03 0.80 -12.76 16 15 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 16 C -0.06 -3.03 4.91 84.86 0.42 -2.61 16 17 N -0.94 -55.88 11.20 21.65 0.24 -55.64 16 18 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.12 4.43 6.70 86.55 0.58 5.01 16 23 C 0.10 2.67 6.52 86.55 0.56 3.23 16 24 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.42 1.17 8.83 -92.71 -0.82 0.35 16 28 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 1.33 8.06 -2.39 -0.02 1.31 16 31 H 0.04 1.20 8.06 -2.39 -0.02 1.18 16 32 H 0.12 1.76 7.72 -2.38 -0.02 1.74 16 33 H 0.13 1.57 7.91 -2.39 -0.02 1.55 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 2.95 7.00 -2.39 -0.02 2.93 16 36 H 0.07 3.72 6.00 -2.39 -0.01 3.70 16 37 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 38 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.13 2.10 5.91 -2.39 -0.01 2.09 16 Total: -1.00 -84.91 341.56 1.67 -83.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.19 Total: 6.73 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 6.55 Total: 31.15 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -7.00 Total: -121.49 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.10 Total: -45.68 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -84.91 1.67 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331292658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.067 kcal (2) G-P(sol) polarization free energy of solvation -84.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds