Wall clock time and date at job start Tue Mar 31 2020 02:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46949 * 2 1 4 4 C 1.50700 * 109.46851 * 240.00655 * 2 1 3 5 5 O 1.21287 * 119.99724 * 245.51870 * 4 2 1 6 6 N 1.34774 * 120.00440 * 65.51469 * 4 2 1 7 7 C 1.46501 * 119.99791 * 6.00797 * 6 4 2 8 8 C 1.46503 * 120.00128 * 186.00581 * 6 4 2 9 9 C 1.50693 * 109.47103 * 90.00370 * 8 6 4 10 10 H 1.08004 * 120.00134 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99924 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00157 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99838 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47167 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47240 * 120.00291 * 13 11 9 16 16 H 1.48500 * 109.47040 * 239.99936 * 13 11 9 17 17 N 1.46893 * 109.47347 * 120.00729 * 2 1 3 18 18 C 1.46902 * 111.00345 * 58.94955 * 17 2 1 19 19 C 1.46905 * 110.99559 * 294.99516 * 17 2 1 20 20 H 1.09001 * 110.53593 * 67.01934 * 19 17 2 21 21 C 1.54628 * 110.48607 * 189.62255 * 19 17 2 22 22 C 1.54486 * 101.76401 * 93.88353 * 21 19 17 23 23 N 1.46758 * 105.47012 * 25.41475 * 22 21 19 24 24 C 1.34418 * 111.30653 * 342.98566 * 23 22 21 25 25 O 1.21277 * 124.94741 * 180.44334 * 24 23 22 26 26 H 1.09001 * 109.47206 * 186.40189 * 1 2 3 27 27 H 1.09004 * 109.46929 * 306.40056 * 1 2 3 28 28 H 1.08995 * 109.47605 * 66.39940 * 1 2 3 29 29 H 1.09000 * 109.47033 * 89.64993 * 7 6 4 30 30 H 1.08997 * 109.47130 * 209.64615 * 7 6 4 31 31 H 1.08998 * 109.46938 * 329.64931 * 7 6 4 32 32 H 1.09005 * 109.46983 * 210.00467 * 8 6 4 33 33 H 1.09006 * 109.47234 * 330.00166 * 8 6 4 34 34 H 0.97000 * 120.00238 * 179.97438 * 12 11 9 35 35 H 1.08999 * 109.46823 * 297.63479 * 18 17 2 36 36 H 1.08993 * 109.46874 * 57.63420 * 18 17 2 37 37 H 1.09001 * 109.47117 * 177.63607 * 18 17 2 38 38 H 1.09000 * 110.97531 * 212.00025 * 21 19 17 39 39 H 1.09004 * 110.97184 * 335.76491 * 21 19 17 40 40 H 1.09001 * 110.24411 * 144.41483 * 22 21 19 41 41 H 1.09002 * 110.24477 * 266.32813 * 22 21 19 42 42 H 0.97008 * 124.34954 * 162.98584 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6448 -1.7515 -1.1222 6 7 1.8008 -0.1886 -2.4515 7 6 1.1782 1.1315 -2.5780 8 6 2.1719 -0.9416 -3.6522 9 6 1.0147 -1.8070 -4.0799 10 1 0.0950 -1.7974 -3.5138 11 6 1.1301 -2.6110 -5.1941 12 7 2.2498 -2.6223 -5.8838 13 14 -0.3040 -3.6843 -5.7239 14 1 -1.4397 -3.4909 -4.7868 15 1 -0.7246 -3.3061 -7.0970 16 1 0.1123 -5.1096 -5.7087 17 7 2.0197 -0.6926 1.1993 18 6 1.5283 -2.0762 1.2458 19 6 1.6488 0.0390 2.4180 20 1 0.5683 0.0211 2.5609 21 6 2.3674 -0.5605 3.6489 22 6 3.6251 0.3315 3.7448 23 7 3.2541 1.6010 3.1088 24 6 2.1508 1.4647 2.3532 25 8 1.6334 2.3547 1.7122 26 1 -0.3634 -1.0213 0.1146 27 1 -0.3633 0.6099 0.8272 28 1 -0.3634 0.4114 -0.9416 29 1 1.9525 1.8986 -2.5915 30 1 0.6063 1.1762 -3.5048 31 1 0.5127 1.3019 -1.7317 32 1 2.4218 -0.2467 -4.4540 33 1 3.0350 -1.5707 -3.4343 34 1 2.3312 -3.1882 -6.6674 35 1 0.4400 -2.0734 1.3062 36 1 1.8408 -2.6032 0.3443 37 1 1.9396 -2.5786 2.1213 38 1 1.7528 -0.4655 4.5441 39 1 2.6397 -1.6012 3.4732 40 1 3.8919 0.4963 4.7887 41 1 4.4564 -0.1301 3.2118 42 1 3.7423 2.4319 3.2195 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340225949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:44 Heat of formation + Delta-G solvation = -35.881196 kcal Electronic energy + Delta-G solvation = -23822.870586 eV Core-core repulsion = 20418.221540 eV Total energy + Delta-G solvation = -3404.649046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89418 -39.20337 -36.81843 -36.03791 -34.77159 -32.69153 -31.34807 -29.53144 -27.72958 -27.52513 -26.14320 -25.22450 -23.64689 -22.01443 -21.54344 -19.80084 -18.32175 -17.52829 -17.20040 -16.48528 -15.88014 -15.49170 -15.41120 -14.66791 -14.56426 -14.20707 -14.06406 -13.87329 -13.71611 -13.19897 -13.02591 -12.72867 -12.65701 -12.33969 -12.01624 -11.91119 -11.63625 -11.45850 -11.28938 -11.23855 -11.05136 -10.80949 -10.74101 -10.52371 -10.11365 -9.84933 -9.56631 -9.25924 -8.70178 -8.42010 -8.15416 -7.54766 -6.02284 -4.07225 2.37878 3.20140 3.30292 3.37236 3.40487 3.49272 3.71963 4.15367 4.25617 4.35658 4.46866 4.71325 4.98345 5.07394 5.23833 5.31743 5.32429 5.34539 5.40756 5.52311 5.64738 5.66800 5.72471 5.78017 5.89713 6.04782 6.05126 6.24604 6.41746 6.52596 6.60870 6.82210 6.96084 7.09671 7.18424 7.50640 7.61630 7.95034 8.10961 8.26331 8.49371 8.93184 9.16800 9.58011 11.05655 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029004 B = 0.004391 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.155851 B = 6375.782416 C = 6622.574728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 H 0.109 0.891 4 C 0.517 3.483 5 O -0.530 6.530 6 N -0.600 5.600 7 C 0.069 3.931 8 C 0.245 3.755 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.497 5.497 18 C 0.002 3.998 19 C 0.044 3.956 20 H 0.077 0.923 21 C -0.130 4.130 22 C 0.107 3.893 23 N -0.726 5.726 24 C 0.531 3.469 25 O -0.530 6.530 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 6.891 19.938 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.056 4.056 3 H 0.127 0.873 4 C 0.303 3.697 5 O -0.408 6.408 6 N -0.332 5.332 7 C -0.075 4.075 8 C 0.126 3.874 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.223 5.223 18 C -0.145 4.145 19 C -0.068 4.068 20 H 0.095 0.905 21 C -0.168 4.168 22 C -0.017 4.017 23 N -0.382 5.382 24 C 0.315 3.685 25 O -0.405 6.405 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.159 6.603 19.429 20.521 hybrid contribution -1.433 -0.130 -0.274 1.465 sum -1.274 6.473 19.155 20.259 Atomic orbital electron populations 1.22528 0.95452 1.02829 1.03706 1.21808 0.94552 0.99547 0.89744 0.87286 1.19967 0.80284 0.85447 0.84026 1.90529 1.40842 1.23750 1.85660 1.48060 1.59684 1.18288 1.07143 1.21960 0.97707 0.84694 1.03135 1.19295 0.96929 0.91170 0.80031 1.21476 0.99757 1.24321 1.10841 0.92455 1.24936 0.96033 0.96809 0.96322 1.69947 1.25274 1.39778 1.18313 0.86458 0.82382 0.80385 0.78275 1.19845 1.20975 1.20891 1.62005 1.58904 1.02498 0.98845 1.22952 0.97282 0.88521 1.05701 1.22430 0.99467 0.92149 0.92783 0.90510 1.22746 0.96230 1.01266 0.96533 1.22027 0.98155 0.83697 0.97818 1.46124 1.29151 1.12794 1.50113 1.20673 0.80213 0.89933 0.77632 1.90743 1.60852 1.46502 1.42401 0.91665 0.91820 0.90055 0.93772 0.90788 0.91186 0.95067 0.93677 0.92792 0.95679 0.86607 0.91697 0.89831 0.88080 0.90536 0.90336 0.75229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 8.09 37.16 0.30 -2.54 16 2 C 0.06 0.94 1.60 -68.87 -0.11 0.83 16 3 H 0.11 1.93 5.51 -51.93 -0.29 1.64 16 4 C 0.52 11.22 6.78 -10.99 -0.07 11.14 16 5 O -0.53 -13.22 13.23 5.55 0.07 -13.14 16 6 N -0.60 -13.37 2.86 -182.95 -0.52 -13.89 16 7 C 0.07 1.21 9.81 59.85 0.59 1.80 16 8 C 0.24 6.57 5.21 -5.20 -0.03 6.54 16 9 C -0.53 -14.98 9.39 -34.44 -0.32 -15.31 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 13 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 N -0.50 -7.46 4.46 -228.31 -1.02 -8.48 16 18 C 0.00 0.03 8.52 60.07 0.51 0.54 16 19 C 0.04 0.51 2.15 -67.72 -0.15 0.37 16 20 H 0.08 0.88 7.01 -51.93 -0.36 0.52 16 21 C -0.13 -1.03 6.67 -25.10 -0.17 -1.20 16 22 C 0.11 0.79 7.78 -3.12 -0.02 0.77 16 23 N -0.73 -6.99 6.24 -59.20 -0.37 -7.35 16 24 C 0.53 6.94 7.14 -10.86 -0.08 6.86 16 25 O -0.53 -8.64 16.41 5.56 0.09 -8.55 16 26 H 0.06 1.01 6.10 -51.93 -0.32 0.69 16 27 H 0.06 0.87 7.02 -51.93 -0.36 0.51 16 28 H 0.08 1.26 5.29 -51.93 -0.27 0.98 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.07 1.09 4.11 -51.93 -0.21 0.88 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.02 0.34 6.28 -51.93 -0.33 0.01 16 36 H 0.12 2.18 5.20 -51.93 -0.27 1.91 16 37 H 0.06 0.76 6.27 -51.93 -0.33 0.44 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.79 6.17 -51.93 -0.32 0.47 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.41 3.22 8.96 -40.82 -0.37 2.86 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -34.63 326.02 -6.65 -41.28 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.88 Total: 2.93 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 0.35 Total: 11.46 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -1.17 Total: -55.77 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.16 Total: -21.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.63 -6.65 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340225949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.399 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds