Wall clock time and date at job start Tue Mar 31 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47386 * 2 1 4 4 C 1.46850 * 110.99845 * 71.67485 * 3 2 1 5 5 C 1.53172 * 109.55788 * 185.83914 * 4 3 2 6 6 C 1.53116 * 109.20902 * 300.86058 * 5 4 3 7 7 C 1.53121 * 109.21137 * 57.62201 * 6 5 4 8 8 C 1.46846 * 111.00115 * 195.88115 * 3 2 1 9 9 H 1.08996 * 109.46546 * 294.17480 * 8 3 2 10 10 C 1.50698 * 109.45210 * 54.15858 * 8 3 2 11 11 O 1.21280 * 120.00445 * 28.87694 * 10 8 3 12 12 N 1.34778 * 119.99834 * 208.88517 * 10 8 3 13 13 C 1.46497 * 119.99906 * 179.97438 * 12 10 8 14 14 C 1.50706 * 109.46779 * 179.97438 * 13 12 10 15 15 O 1.21288 * 120.00118 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99560 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99722 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00456 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99967 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47609 * 59.99801 * 21 19 17 23 23 H 1.48504 * 109.47030 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46888 * 299.99509 * 21 19 17 25 25 H 1.08998 * 109.47078 * 299.99869 * 1 2 3 26 26 H 1.09005 * 109.47649 * 59.99556 * 1 2 3 27 27 H 1.08999 * 109.47550 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47288 * 240.00102 * 2 1 3 29 29 H 1.09005 * 109.47301 * 120.00862 * 2 1 3 30 30 H 1.09000 * 109.46051 * 305.85928 * 4 3 2 31 31 H 1.09001 * 109.46299 * 65.82477 * 4 3 2 32 32 H 1.09005 * 109.58523 * 180.91063 * 5 4 3 33 33 H 1.08996 * 109.48626 * 60.75453 * 5 4 3 34 34 H 1.08999 * 109.52282 * 297.68951 * 6 5 4 35 35 H 1.08994 * 109.52333 * 177.56344 * 6 5 4 36 36 H 1.09000 * 109.50159 * 62.25670 * 7 6 5 37 37 H 1.09000 * 109.50132 * 182.33230 * 7 6 5 38 38 H 0.96999 * 119.99988 * 359.97438 * 12 10 8 39 39 H 1.09003 * 109.47262 * 299.99168 * 13 12 10 40 40 H 1.08995 * 109.47228 * 59.99921 * 13 12 10 41 41 H 0.96996 * 120.00296 * 359.97438 * 16 14 13 42 42 H 0.96990 * 120.00014 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7887 2.0248 1.3014 5 6 2.1760 3.5045 1.2213 6 6 3.6516 3.6185 0.8288 7 6 3.8747 2.9025 -0.5062 8 6 3.4382 1.4415 -0.3751 9 1 4.0368 0.9512 0.3925 10 6 3.6373 0.7380 -1.6929 11 8 2.7359 0.7019 -2.5034 12 7 4.8172 0.1487 -1.9706 13 6 5.0106 -0.5357 -3.2514 14 6 6.4051 -1.1039 -3.3117 15 8 7.1630 -0.9516 -2.3771 16 7 6.8101 -1.7812 -4.4044 17 6 8.0788 -2.2976 -4.4595 18 1 8.7538 -2.1621 -3.6273 19 6 8.4962 -2.9963 -5.5857 20 7 7.6746 -3.1626 -6.5978 21 14 10.2247 -3.7006 -5.6606 22 1 10.4145 -4.6663 -4.5485 23 1 10.4206 -4.3950 -6.9586 24 1 11.2135 -2.5999 -5.5345 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 0.7348 1.9393 1.5662 31 1 2.3950 1.5316 2.0613 32 1 2.0200 3.9762 2.1915 33 1 1.5605 4.0014 0.4714 34 1 4.2699 3.1557 1.5980 35 1 3.9216 4.6696 0.7280 36 1 3.2860 3.3899 -1.2833 37 1 4.9315 2.9450 -0.7697 38 1 5.5383 0.1778 -1.3225 39 1 4.2845 -1.3433 -3.3451 40 1 4.8721 0.1739 -4.0671 41 1 6.2039 -1.9032 -5.1516 42 1 7.9661 -3.6500 -7.3840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343524359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:23 Heat of formation + Delta-G solvation = -80.235714 kcal Electronic energy + Delta-G solvation = -22625.804164 eV Core-core repulsion = 19219.231762 eV Total energy + Delta-G solvation = -3406.572402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.37436 -38.60616 -37.67218 -34.61805 -34.29827 -33.62189 -31.55808 -31.31134 -29.88360 -27.78590 -25.04137 -24.44434 -23.61605 -21.56831 -20.41382 -19.85312 -19.46288 -18.13560 -17.33848 -16.32109 -15.63544 -15.37785 -15.32211 -14.84993 -14.61792 -14.53869 -14.29032 -14.01767 -13.67867 -13.63681 -13.28981 -13.11450 -12.72482 -12.20327 -11.96779 -11.91032 -11.82479 -11.64773 -11.47848 -11.25461 -11.11913 -10.97406 -10.72872 -10.51977 -10.46939 -10.32769 -9.64250 -9.47961 -8.78793 -8.65109 -8.41461 -8.11808 -6.52849 -3.95094 2.78813 3.12620 3.16900 3.20819 3.26253 3.72350 3.81243 4.10181 4.59207 4.63754 4.73452 4.86076 4.93638 5.03054 5.10018 5.11281 5.15575 5.26945 5.34245 5.44348 5.48569 5.53046 5.69358 5.72790 5.80260 5.88399 5.92196 5.94414 5.96058 6.00699 6.05648 6.15797 6.22763 6.67384 6.87810 6.97764 7.44331 7.82058 7.90200 8.42384 8.47618 9.02902 9.37565 9.85460 10.63953 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.003175 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.521370 B = 8816.928380 C = 9291.477841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.515 5.515 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.073 3.927 9 H 0.059 0.941 10 C 0.514 3.486 11 O -0.529 6.529 12 N -0.708 5.708 13 C 0.110 3.890 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.410 0.590 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.396 0.604 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 9.678 13.252 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 N -0.241 5.241 4 C -0.073 4.073 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.039 4.039 9 H 0.077 0.923 10 C 0.298 3.702 11 O -0.405 6.405 12 N -0.363 5.363 13 C -0.018 4.018 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.247 0.753 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.230 0.770 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.490 9.877 12.711 19.777 hybrid contribution 1.331 -1.000 0.265 1.685 sum -10.159 8.877 12.976 18.718 Atomic orbital electron populations 1.21701 0.94588 1.01305 1.02237 1.22200 0.96674 0.88303 1.01173 1.61695 1.15201 1.17853 1.29343 1.22186 1.01272 0.94808 0.89010 1.21635 0.96591 0.95721 1.01643 1.21574 0.96620 1.00682 0.96802 1.21540 1.01629 0.92503 0.98853 1.21557 0.90349 0.97459 0.94524 0.92335 1.20333 0.82197 0.78825 0.88797 1.90693 1.41570 1.59268 1.48928 1.45780 1.15537 1.55194 1.19809 1.20940 0.96876 0.97518 0.86450 1.19746 0.88692 0.85181 0.85063 1.90492 1.55859 1.64209 1.37911 1.41789 1.14394 1.46504 1.15604 1.19685 0.89624 1.31032 1.03254 0.87728 1.25327 1.00104 0.97217 0.95007 1.69604 1.36287 1.41142 1.06427 0.85871 0.81451 0.79131 0.77508 1.19769 1.20832 1.19757 0.93125 0.91561 0.92494 0.89809 0.95219 0.90213 0.94939 0.91487 0.90865 0.92003 0.91290 0.90216 0.90721 0.75259 0.89942 0.89844 0.77025 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.96 37.15 0.37 -1.11 16 2 C 0.04 0.54 5.32 -3.83 -0.02 0.52 16 3 N -0.52 -6.30 4.21 -227.99 -0.96 -7.26 16 4 C 0.05 0.52 5.31 -3.76 -0.02 0.50 16 5 C -0.12 -0.98 6.11 -26.58 -0.16 -1.15 16 6 C -0.12 -1.03 6.00 -26.61 -0.16 -1.19 16 7 C -0.11 -1.18 5.36 -26.65 -0.14 -1.32 16 8 C 0.07 0.93 2.23 -68.88 -0.15 0.77 16 9 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 10 C 0.51 8.18 5.69 -10.99 -0.06 8.12 16 11 O -0.53 -9.98 15.37 5.56 0.09 -9.90 16 12 N -0.71 -11.79 5.53 -61.47 -0.34 -12.13 16 13 C 0.11 2.03 6.15 -5.19 -0.03 1.99 16 14 C 0.43 9.77 7.85 -10.98 -0.09 9.68 16 15 O -0.60 -15.21 15.24 5.55 0.08 -15.13 16 16 N -0.55 -13.57 5.29 -10.96 -0.06 -13.63 16 17 C -0.31 -8.31 9.68 -14.93 -0.14 -8.46 16 18 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 21 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H 0.05 0.46 6.65 -51.93 -0.35 0.11 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.24 5.68 -51.92 -0.29 0.95 16 29 H 0.03 0.34 8.06 -51.93 -0.42 -0.08 16 30 H 0.08 0.69 6.49 -51.93 -0.34 0.35 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.41 6.71 7.44 -40.82 -0.30 6.41 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.44 7.90 -40.82 -0.32 9.11 16 42 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -30.56 340.10 -7.68 -38.24 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.61 Total: 13.39 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -0.71 Total: 8.96 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.63 Total: -56.14 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.17 Total: -25.02 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.56 -7.68 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343524359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.997 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds