Wall clock time and date at job start Tue Mar 31 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99676 * 2 1 4 4 O 1.21277 * 120.00383 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99725 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.54193 * 81.12763 * 5 3 2 7 7 C 1.54894 * 110.48828 * 318.51261 * 5 3 2 8 8 C 1.54896 * 102.74992 * 203.37826 * 7 5 3 9 9 C 1.54372 * 104.21300 * 37.92502 * 8 7 5 10 10 C 1.53876 * 106.54852 * 336.42495 * 9 8 7 11 11 H 1.08997 * 110.02935 * 240.65234 * 10 9 8 12 12 N 1.46500 * 110.03012 * 119.26949 * 10 9 8 13 13 C 1.34780 * 119.99705 * 91.27728 * 12 10 9 14 14 O 1.21579 * 120.00325 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99699 * 179.97438 * 13 12 10 16 16 C 1.46497 * 119.99817 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47148 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47386 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00089 * 179.72277 * 18 17 16 21 21 N 1.31516 * 120.00213 * 0.27647 * 20 18 17 22 22 Si 1.86802 * 120.00131 * 180.27369 * 20 18 17 23 23 H 1.48507 * 109.46982 * 60.00018 * 22 20 18 24 24 H 1.48493 * 109.47440 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46980 * 300.00205 * 22 20 18 26 26 H 1.08997 * 109.47202 * 59.99789 * 1 2 3 27 27 H 1.09003 * 109.46608 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46907 * 299.99271 * 1 2 3 29 29 H 0.97001 * 120.00049 * 180.02562 * 2 1 3 30 30 H 1.08998 * 110.75465 * 321.69516 * 7 5 3 31 31 H 1.08998 * 110.75177 * 84.88277 * 7 5 3 32 32 H 1.09002 * 110.48206 * 156.62018 * 8 7 5 33 33 H 1.08994 * 110.48538 * 279.26721 * 8 7 5 34 34 H 1.09000 * 110.06880 * 217.14642 * 9 8 7 35 35 H 1.09004 * 110.04382 * 95.68618 * 9 8 7 36 36 H 0.97001 * 120.00155 * 271.27127 * 12 10 9 37 37 H 0.97001 * 120.00248 * 0.02562 * 15 13 12 38 38 H 1.09004 * 109.47004 * 60.00416 * 16 15 13 39 39 H 1.08996 * 109.47635 * 300.00365 * 16 15 13 40 40 H 1.08996 * 109.47293 * 59.99756 * 17 16 15 41 41 H 1.09003 * 109.46902 * 299.99780 * 17 16 15 42 42 H 0.96994 * 120.00287 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0279 1.0100 -1.0093 7 6 4.1884 0.0801 0.9602 8 6 5.6072 0.6009 1.2994 9 6 5.4335 2.1310 1.4075 10 6 4.1860 2.4899 0.5812 11 1 4.4562 3.1703 -0.2263 12 7 3.1752 3.1094 1.4419 13 6 3.1466 4.4485 1.5915 14 8 3.9594 5.1425 1.0118 15 7 2.2164 5.0185 2.3830 16 6 2.1857 6.4740 2.5460 17 6 1.0432 6.8576 3.4887 18 6 1.0112 8.3550 3.6559 19 1 1.7337 8.9713 3.1416 20 6 0.0563 8.9384 4.4613 21 7 -0.8233 8.1878 5.0880 22 14 0.0117 10.7950 4.6626 23 1 -0.1989 11.4316 3.3376 24 1 -1.1000 11.1677 5.5737 25 1 1.2992 11.2616 5.2369 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.9501 -0.8400 -0.0004 30 1 3.5747 0.0176 1.8588 31 1 4.2382 -0.8872 0.4602 32 1 5.9484 0.1875 2.2485 33 1 6.3058 0.3522 0.5006 34 1 6.3092 2.6365 1.0004 35 1 5.2868 2.4177 2.4489 36 1 2.5265 2.5558 1.9041 37 1 1.5677 4.4649 2.8452 38 1 2.0300 6.9451 1.5754 39 1 3.1325 6.8127 2.9666 40 1 1.1991 6.3865 4.4591 41 1 0.0962 6.5190 3.0684 42 1 -1.4953 8.5983 5.6543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343924185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:07 Heat of formation + Delta-G solvation = -74.869992 kcal Electronic energy + Delta-G solvation = -22663.270890 eV Core-core repulsion = 19256.931163 eV Total energy + Delta-G solvation = -3406.339727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75776 -39.03244 -37.44435 -34.96490 -34.58462 -33.13430 -32.58798 -30.05215 -29.51408 -27.54838 -26.56810 -24.49279 -22.18218 -21.17884 -20.69153 -20.43266 -19.84139 -18.07602 -17.64290 -16.27041 -16.03771 -15.77059 -15.56185 -15.05638 -14.87838 -14.51207 -14.42434 -13.85102 -13.74459 -13.32403 -13.05954 -12.91287 -12.57383 -12.56952 -12.19903 -11.81525 -11.57637 -11.39927 -11.18107 -11.08022 -10.93343 -10.83065 -10.56839 -10.17881 -9.91800 -9.73236 -9.42801 -9.37422 -9.15967 -8.68430 -8.37429 -8.02013 -6.00573 -4.02729 2.45188 2.94726 3.27725 3.37419 3.40447 3.45041 3.83903 4.09277 4.24380 4.44098 4.49395 4.80487 4.91563 4.99148 5.06809 5.13601 5.23850 5.27969 5.33882 5.36194 5.37207 5.52819 5.57659 5.72096 5.83140 6.03125 6.11004 6.14943 6.47034 6.55440 6.88409 6.94151 7.18865 7.23096 7.47194 7.70423 7.76259 7.99777 8.02975 8.37555 8.67564 9.02759 9.26406 9.61295 11.11217 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.003397 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.451922 B = 8241.392708 C = 9051.329130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.738 5.738 3 C 0.511 3.489 4 O -0.511 6.511 5 C -0.124 4.124 6 H 0.115 0.885 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.138 4.138 10 C 0.181 3.819 11 H 0.096 0.904 12 N -0.730 5.730 13 C 0.706 3.294 14 O -0.606 6.606 15 N -0.738 5.738 16 C 0.142 3.858 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.399 0.601 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.390 0.610 37 H 0.391 0.609 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.182 -24.607 -8.970 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.391 5.391 3 C 0.296 3.704 4 O -0.385 6.385 5 C -0.146 4.146 6 H 0.133 0.867 7 C -0.158 4.158 8 C -0.159 4.159 9 C -0.177 4.177 10 C 0.074 3.926 11 H 0.114 0.886 12 N -0.385 5.385 13 C 0.407 3.593 14 O -0.485 6.485 15 N -0.391 5.391 16 C 0.019 3.981 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.294 -23.110 -9.377 26.283 hybrid contribution -0.631 -0.032 0.537 0.829 sum 7.663 -23.141 -8.840 25.930 Atomic orbital electron populations 1.21542 0.79603 1.02036 1.02647 1.45902 1.07728 1.08695 1.76822 1.20538 0.89720 0.83742 0.76355 1.90841 1.69978 1.30747 1.46912 1.22579 0.91982 0.97816 1.02250 0.86677 1.22591 0.97315 0.97103 0.98771 1.22352 0.96063 0.95603 1.01885 1.22720 0.98161 0.95309 1.01506 1.21048 0.86925 0.91704 0.92965 0.88577 1.45018 1.35910 1.05685 1.51928 1.15944 0.81843 0.81575 0.79986 1.90844 1.42955 1.62044 1.52699 1.45437 1.33820 1.09625 1.50237 1.21524 1.00606 0.75791 1.00167 1.19315 0.92363 0.96903 0.93853 1.21042 1.14896 0.91568 1.28255 0.92292 1.24993 0.95405 0.98387 0.95541 1.69954 1.17687 1.35271 1.30574 0.86574 0.77563 0.85343 0.78055 1.20123 1.21311 1.20136 0.92236 0.90855 0.91980 0.76714 0.90805 0.90722 0.91176 0.91177 0.90735 0.90738 0.77524 0.77625 0.92985 0.92999 0.96079 0.96000 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.25 16 2 N -0.74 -5.19 5.55 -67.08 -0.37 -5.56 16 3 C 0.51 5.35 6.38 -10.99 -0.07 5.28 16 4 O -0.51 -7.97 14.21 5.56 0.08 -7.89 16 5 C -0.12 -1.03 3.31 -90.11 -0.30 -1.33 16 6 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 7 C -0.12 -0.67 5.47 -24.73 -0.14 -0.80 16 8 C -0.12 -0.78 6.83 -25.01 -0.17 -0.95 16 9 C -0.14 -1.38 6.60 -25.56 -0.17 -1.55 16 10 C 0.18 2.20 3.02 -66.81 -0.20 1.99 16 11 H 0.10 1.40 7.46 -51.93 -0.39 1.02 16 12 N -0.73 -10.97 3.12 -57.58 -0.18 -11.15 16 13 C 0.71 14.09 8.56 -86.91 -0.74 13.34 16 14 O -0.61 -14.21 15.94 5.30 0.08 -14.12 16 15 N -0.74 -14.99 5.56 -65.23 -0.36 -15.36 16 16 C 0.14 3.35 5.61 -4.04 -0.02 3.33 16 17 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 18 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 19 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.40 1.54 8.04 -40.82 -0.33 1.21 16 30 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 31 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 36 H 0.39 5.34 7.13 -40.82 -0.29 5.05 16 37 H 0.39 7.14 8.49 -40.82 -0.35 6.80 16 38 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -36.49 345.44 -8.35 -44.84 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.79 Total: 6.32 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.72 Total: 6.96 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.18 Total: -58.40 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.16 Total: -22.01 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.49 -8.35 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343924185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.030 kcal (2) G-P(sol) polarization free energy of solvation -36.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds