Wall clock time and date at job start Tue Mar 31 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99676 * 2 1 4 4 O 1.21277 * 120.00383 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99725 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.54193 * 81.12763 * 5 3 2 7 7 C 1.54894 * 110.48828 * 318.51261 * 5 3 2 8 8 C 1.54896 * 102.74992 * 203.37826 * 7 5 3 9 9 C 1.54372 * 104.21300 * 37.92502 * 8 7 5 10 10 C 1.53876 * 106.54852 * 336.42495 * 9 8 7 11 11 H 1.08997 * 110.02935 * 240.65234 * 10 9 8 12 12 N 1.46500 * 110.03012 * 119.26949 * 10 9 8 13 13 C 1.34780 * 119.99705 * 91.27728 * 12 10 9 14 14 O 1.21579 * 120.00325 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99699 * 179.97438 * 13 12 10 16 16 C 1.46497 * 119.99817 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47148 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47386 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00089 * 179.72277 * 18 17 16 21 21 N 1.31516 * 120.00213 * 0.27647 * 20 18 17 22 22 Si 1.86802 * 120.00131 * 180.27369 * 20 18 17 23 23 H 1.48507 * 109.46982 * 60.00018 * 22 20 18 24 24 H 1.48493 * 109.47440 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46980 * 300.00205 * 22 20 18 26 26 H 1.08997 * 109.47202 * 59.99789 * 1 2 3 27 27 H 1.09003 * 109.46608 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46907 * 299.99271 * 1 2 3 29 29 H 0.97001 * 120.00049 * 180.02562 * 2 1 3 30 30 H 1.08998 * 110.75465 * 321.69516 * 7 5 3 31 31 H 1.08998 * 110.75177 * 84.88277 * 7 5 3 32 32 H 1.09002 * 110.48206 * 156.62018 * 8 7 5 33 33 H 1.08994 * 110.48538 * 279.26721 * 8 7 5 34 34 H 1.09000 * 110.06880 * 217.14642 * 9 8 7 35 35 H 1.09004 * 110.04382 * 95.68618 * 9 8 7 36 36 H 0.97001 * 120.00155 * 271.27127 * 12 10 9 37 37 H 0.97001 * 120.00248 * 0.02562 * 15 13 12 38 38 H 1.09004 * 109.47004 * 60.00416 * 16 15 13 39 39 H 1.08996 * 109.47635 * 300.00365 * 16 15 13 40 40 H 1.08996 * 109.47293 * 59.99756 * 17 16 15 41 41 H 1.09003 * 109.46902 * 299.99780 * 17 16 15 42 42 H 0.96994 * 120.00287 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0279 1.0100 -1.0093 7 6 4.1884 0.0801 0.9602 8 6 5.6072 0.6009 1.2994 9 6 5.4335 2.1310 1.4075 10 6 4.1860 2.4899 0.5812 11 1 4.4562 3.1703 -0.2263 12 7 3.1752 3.1094 1.4419 13 6 3.1466 4.4485 1.5915 14 8 3.9594 5.1425 1.0118 15 7 2.2164 5.0185 2.3830 16 6 2.1857 6.4740 2.5460 17 6 1.0432 6.8576 3.4887 18 6 1.0112 8.3550 3.6559 19 1 1.7337 8.9713 3.1416 20 6 0.0563 8.9384 4.4613 21 7 -0.8233 8.1878 5.0880 22 14 0.0117 10.7950 4.6626 23 1 -0.1989 11.4316 3.3376 24 1 -1.1000 11.1677 5.5737 25 1 1.2992 11.2616 5.2369 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.9501 -0.8400 -0.0004 30 1 3.5747 0.0176 1.8588 31 1 4.2382 -0.8872 0.4602 32 1 5.9484 0.1875 2.2485 33 1 6.3058 0.3522 0.5006 34 1 6.3092 2.6365 1.0004 35 1 5.2868 2.4177 2.4489 36 1 2.5265 2.5558 1.9041 37 1 1.5677 4.4649 2.8452 38 1 2.0300 6.9451 1.5754 39 1 3.1325 6.8127 2.9666 40 1 1.1991 6.3865 4.4591 41 1 0.0962 6.5190 3.0684 42 1 -1.4953 8.5983 5.6543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343924185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:06 Heat of formation + Delta-G solvation = -102.958549 kcal Electronic energy + Delta-G solvation = -22664.488901 eV Core-core repulsion = 19256.931163 eV Total energy + Delta-G solvation = -3407.557738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74593 -40.42486 -38.36634 -36.53355 -35.74176 -34.84055 -34.23274 -31.43080 -30.75937 -28.58821 -27.22832 -26.50328 -23.24564 -22.75143 -22.11596 -21.36682 -20.74743 -19.58498 -18.55682 -18.36757 -17.02632 -16.76468 -16.62166 -16.51293 -16.37891 -15.94013 -15.44720 -15.13633 -15.02517 -14.78140 -14.40540 -14.27293 -13.76647 -13.42764 -13.23163 -13.11222 -12.94719 -12.62860 -12.53597 -12.33237 -12.22430 -12.01261 -11.90628 -11.67169 -11.52845 -11.46444 -11.16409 -10.78487 -10.60874 -10.25308 -10.07205 -9.58170 -8.24380 -6.35578 1.40626 1.44325 1.52075 1.64043 1.83251 2.26317 2.30544 2.41488 3.09728 3.35267 3.38922 3.58607 3.90487 4.22278 4.36767 4.43935 4.45035 4.45807 4.49622 4.56979 4.59106 4.64322 4.78426 4.83262 4.99147 5.02017 5.06903 5.23429 5.27476 5.31730 5.44214 5.47411 5.52242 5.56564 5.69803 5.77819 6.06296 6.16082 6.59769 6.76802 7.14809 7.32062 7.33617 7.66838 8.87755 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.003397 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.451922 B = 8241.392708 C = 9051.329130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.717 5.717 3 C 0.507 3.493 4 O -0.573 6.573 5 C -0.114 4.114 6 H 0.139 0.861 7 C -0.109 4.109 8 C -0.111 4.111 9 C -0.136 4.136 10 C 0.167 3.833 11 H 0.064 0.936 12 N -0.709 5.709 13 C 0.701 3.299 14 O -0.645 6.645 15 N -0.737 5.737 16 C 0.163 3.837 17 C 0.026 3.974 18 C -0.549 4.549 19 H 0.059 0.941 20 C 0.006 3.994 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.267 1.267 26 H 0.042 0.958 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.420 0.580 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.399 0.601 37 H 0.401 0.599 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.009 0.991 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -26.896 -9.160 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.293 3.707 4 O -0.452 6.452 5 C -0.135 4.135 6 H 0.157 0.843 7 C -0.147 4.147 8 C -0.149 4.149 9 C -0.175 4.175 10 C 0.061 3.939 11 H 0.083 0.917 12 N -0.364 5.364 13 C 0.401 3.599 14 O -0.528 6.528 15 N -0.391 5.391 16 C 0.038 3.962 17 C -0.011 4.011 18 C -0.587 4.587 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.191 1.191 26 H 0.061 0.939 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.257 0.743 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.235 0.765 37 H 0.235 0.765 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.021 0.979 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.979 -25.528 -9.571 28.704 hybrid contribution -0.856 0.585 0.561 1.179 sum 8.122 -24.943 -9.011 27.737 Atomic orbital electron populations 1.21621 0.79460 1.04040 1.01021 1.45751 1.07877 1.08648 1.74769 1.20942 0.90587 0.83708 0.75422 1.90827 1.71217 1.33033 1.50090 1.22570 0.90496 0.96381 1.04088 0.84337 1.22634 0.96160 0.97633 0.98231 1.22333 0.97156 0.92048 1.03332 1.22658 0.96578 0.98632 0.99671 1.21366 0.87451 0.92935 0.92188 0.91747 1.44921 1.36230 1.03814 1.51449 1.16124 0.81199 0.83012 0.79544 1.90806 1.44396 1.63387 1.54193 1.45195 1.34543 1.08459 1.50857 1.21036 0.98968 0.77751 0.98410 1.19107 0.92377 0.96087 0.93574 1.21432 1.15512 0.92819 1.28957 0.92264 1.25917 0.94706 1.03754 0.94843 1.70065 1.18179 1.37514 1.30933 0.85442 0.78086 0.78816 0.78359 1.19388 1.20334 1.19142 0.93902 0.86972 0.93690 0.74304 0.90897 0.86629 0.90019 0.89245 0.91434 0.92570 0.76533 0.76452 0.94507 0.93694 0.97285 0.97851 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.70 127.77 1.37 2.41 16 2 N -0.72 -8.29 5.55 -484.52 -2.69 -10.98 16 3 C 0.51 10.00 6.38 87.66 0.56 10.56 16 4 O -0.57 -18.24 14.21 -3.02 -0.04 -18.28 16 5 C -0.11 -1.65 3.31 -10.46 -0.03 -1.68 16 6 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 7 C -0.11 -0.77 5.47 31.89 0.17 -0.59 16 8 C -0.11 -1.06 6.83 31.71 0.22 -0.84 16 9 C -0.14 -2.65 6.60 31.36 0.21 -2.44 16 10 C 0.17 4.06 3.02 45.72 0.14 4.20 16 11 H 0.06 1.98 7.46 -2.39 -0.02 1.96 16 12 N -0.71 -21.94 3.12 -454.35 -1.42 -23.36 16 13 C 0.70 29.18 8.56 179.05 1.53 30.72 16 14 O -0.64 -31.69 15.94 -3.96 -0.06 -31.76 16 15 N -0.74 -31.21 5.56 -478.54 -2.66 -33.87 16 16 C 0.16 8.01 5.61 86.38 0.48 8.50 16 17 C 0.03 1.44 5.09 29.85 0.15 1.59 16 18 C -0.55 -32.57 9.11 25.60 0.23 -32.34 16 19 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 20 C 0.01 0.38 5.46 84.65 0.46 0.84 16 21 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.42 1.47 8.04 -92.71 -0.75 0.72 16 30 H 0.07 0.58 8.05 -2.39 -0.02 0.57 16 31 H 0.12 -0.01 8.07 -2.39 -0.02 -0.03 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.30 7.92 -2.38 -0.02 1.28 16 36 H 0.40 11.07 7.13 -92.71 -0.66 10.41 16 37 H 0.40 15.24 8.49 -92.71 -0.79 14.46 16 38 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -82.81 345.44 -0.23 -83.04 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -1.15 Total: 23.23 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.49 Total: 20.91 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -6.48 Total: -124.51 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.11 Total: -50.04 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -82.81 -0.23 -83.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343924185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.921 kcal (2) G-P(sol) polarization free energy of solvation -82.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds