Wall clock time and date at job start Tue Mar 31 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21583 * 119.99981 * 180.02562 * 3 2 1 5 5 N 1.34776 * 119.99954 * 0.02562 * 3 2 1 6 6 C 1.46501 * 119.99941 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47342 * 180.02562 * 6 5 3 8 8 O 1.21294 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99993 * 179.97438 * 9 7 6 11 11 H 1.08006 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99960 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99743 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00033 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47398 * 89.99963 * 14 12 10 16 16 H 1.48495 * 109.46795 * 209.99938 * 14 12 10 17 17 H 1.48497 * 109.47013 * 329.99511 * 14 12 10 18 18 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 19 19 C 1.53004 * 109.47487 * 59.99455 * 18 2 1 20 20 C 1.53001 * 109.47239 * 179.97438 * 19 18 2 21 21 C 1.52997 * 109.46736 * 60.00467 * 20 19 18 22 22 C 1.53006 * 109.47368 * 299.99585 * 21 20 19 23 23 C 1.53001 * 109.46527 * 60.00290 * 22 21 20 24 24 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 27 27 H 0.97000 * 120.00335 * 359.97438 * 5 3 2 28 28 H 1.09001 * 109.47019 * 300.00247 * 6 5 3 29 29 H 1.09000 * 109.47410 * 60.00065 * 6 5 3 30 30 H 0.96999 * 120.00168 * 0.02562 * 9 7 6 31 31 H 0.96996 * 119.99660 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.47380 * 180.02562 * 18 2 1 33 33 H 1.08993 * 109.47015 * 300.00345 * 19 18 2 34 34 H 1.09000 * 109.46385 * 60.00312 * 19 18 2 35 35 H 1.08995 * 109.47114 * 300.00810 * 20 19 18 36 36 H 1.08993 * 109.47156 * 180.02562 * 20 19 18 37 37 H 1.09007 * 109.47077 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.47454 * 59.99930 * 21 20 19 39 39 H 1.08993 * 109.46907 * 300.00168 * 22 21 20 40 40 H 1.09000 * 109.46878 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46671 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47626 * 60.00318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1671 -0.0005 5 7 1.4651 2.3343 0.0005 6 6 2.1976 3.6031 0.0000 7 6 1.2184 4.7485 0.0013 8 8 0.0258 4.5269 0.0022 9 7 1.6677 6.0192 0.0016 10 6 0.7768 7.0613 0.0024 11 1 -0.2851 6.8640 0.0031 12 6 1.2400 8.3713 0.0021 13 7 0.3860 9.3702 0.0033 14 14 3.0766 8.7126 0.0001 15 1 3.5617 8.8034 -1.4005 16 1 3.3424 9.9950 0.7001 17 1 3.7855 7.6109 0.6991 18 6 2.1975 -1.2687 -0.0006 19 6 1.8278 -2.0706 -1.2501 20 6 2.5932 -3.3954 -1.2510 21 6 2.2241 -4.1983 -0.0020 22 6 2.5938 -3.3966 1.2476 23 6 1.8284 -2.0718 1.2483 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4951 2.3344 0.0005 28 1 2.8250 3.6608 0.8894 29 1 2.8236 3.6609 -0.8905 30 1 2.6213 6.1965 0.0006 31 1 0.7094 10.2847 0.0028 32 1 3.2692 -1.0696 0.0000 33 1 0.7562 -2.2697 -1.2501 34 1 2.0912 -1.4986 -2.1398 35 1 3.6648 -3.1958 -1.2510 36 1 2.3302 -3.9664 -2.1413 37 1 2.7691 -5.1424 -0.0028 38 1 1.1525 -4.3979 -0.0019 39 1 3.6654 -3.1971 1.2474 40 1 2.3304 -3.9685 2.1373 41 1 2.0914 -1.5008 2.1388 42 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352508198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:00 Heat of formation + Delta-G solvation = -74.775337 kcal Electronic energy + Delta-G solvation = -22445.679615 eV Core-core repulsion = 19039.343992 eV Total energy + Delta-G solvation = -3406.335623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41500 -38.77446 -38.01543 -35.02836 -34.50528 -33.71330 -31.79434 -31.02125 -30.06273 -27.66841 -26.72936 -24.35027 -22.85684 -22.47428 -20.17174 -19.66525 -19.42901 -18.79889 -17.78173 -16.64074 -15.73291 -15.70051 -15.22309 -15.03545 -14.56627 -14.45688 -14.37785 -14.29834 -13.65834 -13.25985 -13.17902 -12.98133 -12.63095 -12.58503 -12.41650 -12.27419 -12.11801 -12.04228 -11.39336 -11.36080 -11.22820 -10.90223 -10.63468 -10.53477 -10.48914 -10.06082 -9.96218 -9.69154 -8.95803 -8.75880 -8.47665 -8.29606 -6.40293 -3.92791 2.67176 3.00568 3.05276 3.13225 3.32180 3.58563 4.01996 4.05116 4.43149 4.52479 4.59121 4.65607 4.87901 4.97478 5.00496 5.14907 5.20250 5.22827 5.25558 5.37811 5.42915 5.48382 5.63664 5.65882 5.77101 5.78023 5.80851 5.86001 5.87337 5.87582 5.96187 6.11201 6.16670 6.51625 6.67255 7.03442 7.45657 8.00827 8.12133 8.45127 8.74192 8.82276 9.30565 9.64383 10.71907 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.043016 B = 0.002969 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.757828 B = 9428.604998 C = 9727.969753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.630 5.630 3 C 0.707 3.293 4 O -0.598 6.598 5 N -0.725 5.725 6 C 0.125 3.875 7 C 0.439 3.561 8 O -0.580 6.580 9 N -0.576 5.576 10 C -0.310 4.310 11 H 0.121 0.879 12 C 0.045 3.955 13 N -0.875 5.875 14 Si 0.879 3.121 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.267 1.267 18 C 0.158 3.842 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.128 4.128 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.408 0.592 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.375 0.625 31 H 0.275 0.725 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -24.143 -0.118 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.366 5.366 3 C 0.408 3.592 4 O -0.477 6.477 5 N -0.384 5.384 6 C -0.004 4.004 7 C 0.225 3.775 8 O -0.464 6.464 9 N -0.214 5.214 10 C -0.438 4.438 11 H 0.139 0.861 12 C -0.159 4.159 13 N -0.514 5.514 14 Si 0.705 3.295 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.192 1.192 18 C 0.054 3.946 19 C -0.167 4.167 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.166 4.166 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.248 0.752 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.208 0.792 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.304 -23.977 -0.116 24.361 hybrid contribution 0.800 0.593 0.020 0.996 sum 5.104 -23.384 -0.096 23.935 Atomic orbital electron populations 1.21730 0.80020 1.03150 1.01896 1.47006 1.06284 1.04626 1.78722 1.15785 0.85182 0.80359 0.77852 1.90875 1.11574 1.86360 1.58939 1.44924 1.11064 1.03563 1.78834 1.20808 0.94005 0.82379 1.03209 1.19663 0.89260 0.83696 0.84872 1.90528 1.16409 1.83822 1.55685 1.42116 1.08364 1.05459 1.65479 1.19439 0.92362 0.83386 1.48627 0.86099 1.25067 0.98492 0.95222 0.97147 1.69621 1.34220 0.99292 1.48259 0.86666 0.84631 0.79039 0.79146 1.19391 1.20001 1.19185 1.20933 0.98131 0.81388 0.94150 1.21910 1.00600 0.96102 0.98133 1.21492 1.00532 0.95510 0.97900 1.21567 1.01342 0.98264 0.94639 1.21499 1.00524 0.95551 0.97887 1.21897 1.00603 0.96019 0.98113 0.92623 0.90977 0.90858 0.75242 0.89915 0.89917 0.79218 0.91400 0.87998 0.91672 0.91524 0.91675 0.91766 0.91993 0.91992 0.91684 0.91774 0.91570 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 9.26 59.85 0.55 1.31 16 2 N -0.63 -7.99 2.76 -179.66 -0.50 -8.48 16 3 C 0.71 11.66 8.28 -86.92 -0.72 10.94 16 4 O -0.60 -11.60 15.67 5.29 0.08 -11.51 16 5 N -0.72 -12.24 5.39 -66.42 -0.36 -12.60 16 6 C 0.12 2.24 6.15 -5.19 -0.03 2.21 16 7 C 0.44 9.78 7.85 -10.99 -0.09 9.69 16 8 O -0.58 -14.72 15.24 5.55 0.08 -14.64 16 9 N -0.58 -13.52 5.09 -10.96 -0.06 -13.57 16 10 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 11 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 12 C 0.04 1.21 5.50 -17.46 -0.10 1.11 16 13 N -0.87 -25.04 13.96 55.50 0.77 -24.27 16 14 Si 0.88 19.10 27.74 -169.99 -4.71 14.39 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 18 C 0.16 1.72 2.52 -67.93 -0.17 1.55 16 19 C -0.13 -1.15 5.18 -26.73 -0.14 -1.29 16 20 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 21 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 22 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 23 C -0.13 -1.15 5.21 -26.73 -0.14 -1.29 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 26 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 27 H 0.41 6.76 5.17 -40.82 -0.21 6.55 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 31 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.10 1.34 6.90 -51.93 -0.36 0.99 16 33 H 0.06 0.52 6.66 -51.93 -0.35 0.18 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -32.45 334.68 -7.51 -39.96 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.42 Total: 13.14 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: -1.46 Total: 12.54 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.14 Total: -58.92 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.17 Total: -26.15 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.45 -7.51 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352508198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.811 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds