Wall clock time and date at job start Tue Mar 31 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21583 * 119.99981 * 180.02562 * 3 2 1 5 5 N 1.34776 * 119.99954 * 0.02562 * 3 2 1 6 6 C 1.46501 * 119.99941 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47342 * 180.02562 * 6 5 3 8 8 O 1.21294 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99993 * 179.97438 * 9 7 6 11 11 H 1.08006 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99960 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99743 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00033 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47398 * 89.99963 * 14 12 10 16 16 H 1.48495 * 109.46795 * 209.99938 * 14 12 10 17 17 H 1.48497 * 109.47013 * 329.99511 * 14 12 10 18 18 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 19 19 C 1.53004 * 109.47487 * 59.99455 * 18 2 1 20 20 C 1.53001 * 109.47239 * 179.97438 * 19 18 2 21 21 C 1.52997 * 109.46736 * 60.00467 * 20 19 18 22 22 C 1.53006 * 109.47368 * 299.99585 * 21 20 19 23 23 C 1.53001 * 109.46527 * 60.00290 * 22 21 20 24 24 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 27 27 H 0.97000 * 120.00335 * 359.97438 * 5 3 2 28 28 H 1.09001 * 109.47019 * 300.00247 * 6 5 3 29 29 H 1.09000 * 109.47410 * 60.00065 * 6 5 3 30 30 H 0.96999 * 120.00168 * 0.02562 * 9 7 6 31 31 H 0.96996 * 119.99660 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.47380 * 180.02562 * 18 2 1 33 33 H 1.08993 * 109.47015 * 300.00345 * 19 18 2 34 34 H 1.09000 * 109.46385 * 60.00312 * 19 18 2 35 35 H 1.08995 * 109.47114 * 300.00810 * 20 19 18 36 36 H 1.08993 * 109.47156 * 180.02562 * 20 19 18 37 37 H 1.09007 * 109.47077 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.47454 * 59.99930 * 21 20 19 39 39 H 1.08993 * 109.46907 * 300.00168 * 22 21 20 40 40 H 1.09000 * 109.46878 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46671 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47626 * 60.00318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1671 -0.0005 5 7 1.4651 2.3343 0.0005 6 6 2.1976 3.6031 0.0000 7 6 1.2184 4.7485 0.0013 8 8 0.0258 4.5269 0.0022 9 7 1.6677 6.0192 0.0016 10 6 0.7768 7.0613 0.0024 11 1 -0.2851 6.8640 0.0031 12 6 1.2400 8.3713 0.0021 13 7 0.3860 9.3702 0.0033 14 14 3.0766 8.7126 0.0001 15 1 3.5617 8.8034 -1.4005 16 1 3.3424 9.9950 0.7001 17 1 3.7855 7.6109 0.6991 18 6 2.1975 -1.2687 -0.0006 19 6 1.8278 -2.0706 -1.2501 20 6 2.5932 -3.3954 -1.2510 21 6 2.2241 -4.1983 -0.0020 22 6 2.5938 -3.3966 1.2476 23 6 1.8284 -2.0718 1.2483 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4951 2.3344 0.0005 28 1 2.8250 3.6608 0.8894 29 1 2.8236 3.6609 -0.8905 30 1 2.6213 6.1965 0.0006 31 1 0.7094 10.2847 0.0028 32 1 3.2692 -1.0696 0.0000 33 1 0.7562 -2.2697 -1.2501 34 1 2.0912 -1.4986 -2.1398 35 1 3.6648 -3.1958 -1.2510 36 1 2.3302 -3.9664 -2.1413 37 1 2.7691 -5.1424 -0.0028 38 1 1.1525 -4.3979 -0.0019 39 1 3.6654 -3.1971 1.2474 40 1 2.3304 -3.9685 2.1373 41 1 2.0914 -1.5008 2.1388 42 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352508198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:59 Heat of formation + Delta-G solvation = -97.669138 kcal Electronic energy + Delta-G solvation = -22446.672365 eV Core-core repulsion = 19039.343992 eV Total energy + Delta-G solvation = -3407.328372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59270 -40.36507 -39.13105 -36.30801 -36.04446 -35.28262 -33.83723 -31.67086 -30.95501 -29.11520 -27.74770 -26.16863 -23.50999 -23.37675 -21.49629 -21.18435 -20.58292 -20.31662 -19.18645 -17.79829 -17.34263 -17.02116 -16.77803 -16.24317 -15.98244 -15.81264 -15.14379 -15.06213 -14.97517 -14.65769 -14.45210 -14.33749 -14.02827 -13.71405 -13.56908 -13.30006 -13.18998 -13.06936 -12.96902 -12.45206 -12.08317 -12.03189 -12.00577 -11.58900 -11.55992 -11.27885 -11.17309 -11.15322 -10.66590 -10.35646 -10.27530 -9.51140 -8.46167 -6.08101 1.30928 1.33765 1.43238 1.52282 1.77229 2.06199 2.20069 2.68767 3.03608 3.10114 3.72406 3.85170 3.97647 4.01478 4.20537 4.21545 4.33304 4.37353 4.41733 4.47888 4.52784 4.59637 4.67255 4.71081 4.83218 4.91876 5.11567 5.14407 5.21214 5.23990 5.28040 5.35760 5.43394 5.47244 5.53871 5.57779 5.87022 5.92590 6.48064 6.76986 6.87041 7.27158 7.46797 7.76756 8.70219 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.043016 B = 0.002969 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.757828 B = 9428.604998 C = 9727.969753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.624 5.624 3 C 0.703 3.297 4 O -0.631 6.631 5 N -0.728 5.728 6 C 0.137 3.863 7 C 0.446 3.554 8 O -0.614 6.614 9 N -0.577 5.577 10 C -0.331 4.331 11 H 0.064 0.936 12 C -0.008 4.008 13 N -0.925 5.925 14 Si 0.958 3.042 15 H -0.256 1.256 16 H -0.273 1.273 17 H -0.233 1.233 18 C 0.154 3.846 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.121 4.121 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.409 0.591 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.392 0.608 31 H 0.281 0.719 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 -26.273 -0.112 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.359 5.359 3 C 0.404 3.596 4 O -0.513 6.513 5 N -0.387 5.387 6 C 0.008 3.992 7 C 0.234 3.766 8 O -0.500 6.500 9 N -0.217 5.217 10 C -0.460 4.460 11 H 0.082 0.918 12 C -0.208 4.208 13 N -0.565 5.565 14 Si 0.778 3.222 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.157 1.157 18 C 0.051 3.949 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.160 4.160 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.249 0.751 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.228 0.772 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.910 -26.163 -0.108 26.823 hybrid contribution 0.161 1.170 0.016 1.181 sum 6.070 -24.993 -0.092 25.720 Atomic orbital electron populations 1.21921 0.78197 1.04139 1.02869 1.47143 1.07465 1.04015 1.77301 1.15931 0.84884 0.81000 0.77794 1.90847 1.12972 1.86910 1.60525 1.44903 1.11056 1.03480 1.79274 1.20698 0.92756 0.80906 1.04838 1.20454 0.89502 0.84322 0.82340 1.90515 1.18508 1.84543 1.56423 1.41916 1.08625 1.04919 1.66239 1.19033 0.90813 0.85382 1.50771 0.91774 1.26059 1.04850 0.94147 0.95700 1.69780 1.37384 1.00081 1.49250 0.85447 0.76845 0.79775 0.80085 1.18068 1.19773 1.15685 1.21089 0.96529 0.81006 0.96319 1.21865 1.01725 0.96334 0.96191 1.21497 0.99825 0.94845 0.99099 1.21552 1.02120 0.98319 0.93396 1.21503 0.99813 0.94869 0.99106 1.21847 1.01669 0.96282 0.96200 0.91634 0.91793 0.88088 0.75109 0.88235 0.88123 0.77222 0.90898 0.90757 0.90131 0.93028 0.92497 0.90422 0.90780 0.91006 0.92495 0.90489 0.93165 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 9.26 127.77 1.18 2.48 16 2 N -0.62 -15.19 2.76 -840.60 -2.32 -17.51 16 3 C 0.70 22.72 8.28 179.06 1.48 24.20 16 4 O -0.63 -24.19 15.67 -3.98 -0.06 -24.25 16 5 N -0.73 -24.04 5.39 -482.30 -2.60 -26.64 16 6 C 0.14 4.72 6.15 85.63 0.53 5.25 16 7 C 0.45 19.82 7.85 87.66 0.69 20.51 16 8 O -0.61 -31.89 15.24 -3.07 -0.05 -31.94 16 9 N -0.58 -26.85 5.09 -306.97 -1.56 -28.41 16 10 C -0.33 -18.88 10.16 84.04 0.85 -18.02 16 11 H 0.06 4.31 7.39 -2.91 -0.02 4.28 16 12 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 13 N -0.93 -54.45 13.96 21.66 0.30 -54.15 16 14 Si 0.96 38.36 27.74 68.60 1.90 40.27 16 15 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 18 C 0.15 3.20 2.52 44.99 0.11 3.31 16 19 C -0.12 -1.97 5.18 30.60 0.16 -1.81 16 20 C -0.11 -1.44 5.92 30.59 0.18 -1.26 16 21 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 22 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 23 C -0.12 -1.98 5.21 30.60 0.16 -1.82 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.30 6.36 -2.38 -0.02 1.28 16 26 H 0.10 1.28 6.43 -2.39 -0.02 1.26 16 27 H 0.41 13.42 5.17 -92.71 -0.48 12.94 16 28 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 31 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.07 1.98 6.90 -2.39 -0.02 1.96 16 33 H 0.08 1.04 6.66 -2.39 -0.02 1.03 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 Total: -1.00 -73.64 334.68 1.75 -71.89 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -0.04 Total: 40.15 kcal Atomic # 6 Polarization: 24.42 SS G_CDS: 6.18 Total: 30.60 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.18 Total: -126.71 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -0.11 Total: -56.19 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.27 kcal Total: -73.64 1.75 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352508198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.782 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds