Wall clock time and date at job start Tue Mar 31 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00032 * 2 1 4 4 O 1.21585 * 120.00396 * 180.02562 * 3 2 1 5 5 N 1.34779 * 119.99647 * 0.02562 * 3 2 1 6 6 C 1.46504 * 119.99669 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47271 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.47605 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47527 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00012 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00004 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99801 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47168 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47408 * 120.00003 * 13 11 9 16 16 H 1.48507 * 109.46905 * 239.99909 * 13 11 9 17 17 C 1.46501 * 119.99886 * 180.02562 * 2 1 3 18 18 H 1.09003 * 110.43239 * 181.08163 * 17 2 1 19 19 C 1.54623 * 110.48704 * 303.76927 * 17 2 1 20 20 C 1.54479 * 101.76448 * 93.88129 * 19 17 2 21 21 N 1.46762 * 105.53509 * 25.20998 * 20 19 17 22 22 C 1.46497 * 124.34850 * 163.21275 * 21 20 19 23 23 C 1.34417 * 111.30037 * 343.36548 * 21 20 19 24 24 O 1.21283 * 124.94355 * 180.27867 * 23 21 20 25 25 H 1.09003 * 109.47080 * 269.99322 * 1 2 3 26 26 H 1.09002 * 109.47545 * 29.99779 * 1 2 3 27 27 H 1.09001 * 109.47087 * 149.99844 * 1 2 3 28 28 H 0.96996 * 120.00411 * 359.97438 * 5 3 2 29 29 H 1.09006 * 109.46844 * 299.99756 * 6 5 3 30 30 H 1.08997 * 109.47123 * 59.99880 * 6 5 3 31 31 H 1.09000 * 109.46943 * 299.99967 * 7 6 5 32 32 H 1.08998 * 109.47208 * 59.99233 * 7 6 5 33 33 H 1.09000 * 109.46932 * 299.99960 * 8 7 6 34 34 H 1.08998 * 109.47475 * 59.99382 * 8 7 6 35 35 H 0.97008 * 119.99903 * 180.02562 * 12 11 9 36 36 H 1.09006 * 110.96977 * 212.00199 * 19 17 2 37 37 H 1.09001 * 110.96989 * 335.72884 * 19 17 2 38 38 H 1.09004 * 110.24168 * 144.41384 * 20 19 17 39 39 H 1.08995 * 110.24508 * 266.32593 * 20 19 17 40 40 H 1.08998 * 109.46843 * 180.19427 * 22 21 20 41 41 H 1.09000 * 109.46978 * 300.19813 * 22 21 20 42 42 H 1.09003 * 109.47376 * 60.19602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1974 3.6031 0.0011 7 6 1.2032 4.7660 0.0023 8 6 1.9681 6.0910 0.0022 9 6 0.9889 7.2365 0.0027 10 1 -0.0730 7.0391 0.0026 11 6 1.4485 8.5364 0.0033 12 7 2.7415 8.7767 0.0039 13 14 0.2345 9.9562 0.0047 14 1 -1.1513 9.4226 0.0043 15 1 0.4454 10.7866 1.2175 16 1 0.4445 10.7881 -1.2075 17 6 2.1974 -1.2687 -0.0006 18 1 3.2722 -1.0877 0.0188 19 6 1.7708 -2.1405 1.2031 20 6 0.6628 -3.0179 0.5795 21 7 0.9624 -3.0678 -0.8564 22 6 0.3999 -4.0518 -1.7844 23 6 1.8218 -2.0965 -1.2099 24 8 2.2322 -1.9079 -2.3354 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 0.4949 2.3344 0.0005 29 1 2.8240 3.6604 0.8912 30 1 2.8241 3.6612 -0.8888 31 1 0.5762 4.7089 -0.8875 32 1 0.5768 4.7076 0.8924 33 1 2.5954 6.1485 0.8918 34 1 2.5942 6.1492 -0.8881 35 1 3.0648 9.6913 0.0047 36 1 2.6012 -2.7526 1.5553 37 1 1.3734 -1.5243 2.0096 38 1 0.6892 -4.0199 1.0080 39 1 -0.3146 -2.5640 0.7430 40 1 0.7868 -3.8685 -2.7868 41 1 0.6808 -5.0552 -1.4643 42 1 -0.6866 -3.9640 -1.7927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352900678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:37 Heat of formation + Delta-G solvation = -84.347730 kcal Electronic energy + Delta-G solvation = -22315.846188 eV Core-core repulsion = 18909.095475 eV Total energy + Delta-G solvation = -3406.750713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15726 -40.71004 -37.84778 -37.05196 -36.31651 -35.22941 -33.39149 -32.32107 -29.04712 -28.57392 -27.86761 -26.74501 -24.91067 -22.95986 -22.32339 -21.37487 -20.34019 -19.43793 -18.50660 -18.17899 -17.60162 -17.07063 -16.73275 -16.50492 -16.32640 -15.86256 -15.41405 -14.90122 -14.83082 -14.63084 -14.30177 -14.15333 -13.85127 -13.73866 -13.53879 -13.49135 -13.42711 -13.17200 -12.77557 -12.53498 -12.38520 -12.32245 -12.24246 -11.68231 -11.62145 -11.40132 -11.28083 -11.12331 -10.55459 -10.27192 -9.79006 -9.60124 -8.18669 -6.30195 0.97061 1.42436 1.42886 1.56035 1.77130 1.93018 2.10111 2.42604 2.90387 3.15249 3.26865 3.45483 3.86921 4.05249 4.09423 4.14920 4.22343 4.37010 4.46749 4.52754 4.55792 4.63442 4.68531 4.78651 4.87571 4.95030 4.95986 4.98505 5.01241 5.16459 5.33160 5.43272 5.50140 5.53360 5.71489 5.74188 5.85141 5.94953 6.23032 6.83653 6.88334 6.99760 7.39362 7.43361 8.93820 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039451 B = 0.002661 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.577329 B =10518.548628 C =10658.964024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.613 5.613 3 C 0.700 3.300 4 O -0.634 6.634 5 N -0.725 5.725 6 C 0.148 3.852 7 C -0.099 4.099 8 C 0.023 3.977 9 C -0.538 4.538 10 H 0.068 0.932 11 C -0.005 4.005 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.257 1.257 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.120 3.880 18 H 0.101 0.899 19 C -0.131 4.131 20 C 0.099 3.901 21 N -0.612 5.612 22 C 0.087 3.913 23 C 0.499 3.501 24 O -0.578 6.578 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.412 0.588 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.073 0.927 33 H -0.006 1.006 34 H -0.010 1.010 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 -29.269 4.675 31.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.351 5.351 3 C 0.401 3.599 4 O -0.516 6.516 5 N -0.382 5.382 6 C 0.023 3.977 7 C -0.137 4.137 8 C -0.015 4.015 9 C -0.576 4.576 10 H 0.086 0.914 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.793 3.207 14 H -0.181 1.181 15 H -0.205 1.205 16 H -0.208 1.208 17 C 0.012 3.988 18 H 0.119 0.881 19 C -0.170 4.170 20 C -0.022 4.022 21 N -0.346 5.346 22 C -0.054 4.054 23 C 0.285 3.715 24 O -0.456 6.456 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.250 0.750 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.013 0.987 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.759 -29.111 4.036 31.297 hybrid contribution -0.150 1.134 -0.470 1.237 sum -10.909 -27.977 3.566 30.240 Atomic orbital electron populations 1.22144 0.76886 1.04013 1.04392 1.46729 1.07726 1.02623 1.77976 1.16083 0.84894 0.81362 0.77578 1.90884 1.13933 1.86813 1.59926 1.45139 1.10534 1.03761 1.78774 1.21130 0.94702 0.81327 1.00526 1.21581 0.97415 0.92482 1.02206 1.18945 0.95207 0.92216 0.95093 1.21704 0.93891 0.91788 1.50256 0.91391 1.26049 0.97035 1.02357 0.94828 1.70129 1.14822 1.20903 1.51808 0.85345 0.79327 0.78454 0.77573 1.18056 1.20511 1.20751 1.21622 0.99107 0.83107 0.94981 0.88063 1.23036 1.00424 0.97618 0.95907 1.22492 0.99254 1.03091 0.77366 1.48355 1.44071 1.30616 1.11566 1.21776 0.99702 0.91458 0.92438 1.21459 0.78758 0.81847 0.89427 1.90708 1.57642 1.72197 1.25067 0.88549 0.90753 0.89990 0.75000 0.92979 0.94001 0.91586 0.90875 0.98747 0.99197 0.92835 0.87242 0.86750 0.86668 0.88378 0.92465 0.89442 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 8.89 127.77 1.14 2.01 16 2 N -0.61 -14.16 2.81 -840.66 -2.37 -16.53 16 3 C 0.70 22.94 8.28 179.05 1.48 24.43 16 4 O -0.63 -27.13 15.70 -3.98 -0.06 -27.20 16 5 N -0.73 -21.68 5.42 -478.53 -2.59 -24.27 16 6 C 0.15 5.51 5.67 86.38 0.49 6.00 16 7 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 8 C 0.02 1.22 4.97 29.85 0.15 1.37 16 9 C -0.54 -30.17 9.11 25.60 0.23 -29.93 16 10 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 11 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 12 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 13 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 14 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 C 0.12 2.62 3.43 44.98 0.15 2.77 16 18 H 0.10 2.90 6.97 -2.39 -0.02 2.89 16 19 C -0.13 -1.22 6.48 31.65 0.20 -1.01 16 20 C 0.10 0.50 6.44 86.83 0.56 1.06 16 21 N -0.61 -8.25 3.03 -842.91 -2.55 -10.80 16 22 C 0.09 0.83 11.14 127.77 1.42 2.25 16 23 C 0.50 12.08 6.77 87.90 0.60 12.68 16 24 O -0.58 -20.60 17.35 -3.04 -0.05 -20.65 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.98 6.36 -2.39 -0.02 0.96 16 27 H 0.08 0.91 5.78 -2.39 -0.01 0.89 16 28 H 0.41 9.24 6.20 -92.71 -0.58 8.67 16 29 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 36 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.11 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 39 H 0.10 0.13 7.08 -2.39 -0.02 0.11 16 40 H 0.06 0.88 7.53 -2.39 -0.02 0.86 16 41 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -85.71 344.01 2.17 -83.54 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.44 Total: 9.33 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.05 Total: 18.08 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -7.23 Total: -109.08 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.12 Total: -47.85 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -85.71 2.17 -83.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352900678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.810 kcal (2) G-P(sol) polarization free energy of solvation -85.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds