Wall clock time and date at job start Tue Mar 31 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00308 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00246 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00094 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47492 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47074 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00280 * 293.95507 * 16 15 14 18 18 C 1.46895 * 110.99988 * 169.99786 * 16 15 14 19 19 H 1.09006 * 110.43526 * 59.30379 * 18 16 15 20 20 C 1.54633 * 110.49007 * 181.84053 * 18 16 15 21 21 C 1.54685 * 101.67110 * 143.39779 * 20 18 16 22 22 N 1.46764 * 105.53177 * 334.74230 * 21 20 18 23 23 C 1.34417 * 111.30588 * 16.92475 * 22 21 20 24 24 O 1.21277 * 124.94884 * 179.62945 * 23 22 21 25 25 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 27 27 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 29 29 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 30 30 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46865 * 300.00571 * 14 12 2 32 32 H 1.09004 * 109.46641 * 59.99818 * 14 12 2 33 33 H 1.08996 * 109.46776 * 300.00408 * 15 14 12 34 34 H 1.09000 * 109.46955 * 60.00359 * 15 14 12 35 35 H 1.09000 * 109.47235 * 59.99688 * 17 16 15 36 36 H 1.09000 * 109.47509 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.47006 * 300.00041 * 17 16 15 38 38 H 1.08998 * 110.96721 * 261.60195 * 20 18 16 39 39 H 1.09004 * 110.96413 * 25.35731 * 20 18 16 40 40 H 1.08999 * 110.29211 * 215.68181 * 21 20 18 41 41 H 1.08994 * 110.21362 * 93.76066 * 21 20 18 42 42 H 0.96997 * 124.34793 * 196.94547 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 7 1.6453 -4.9074 0.0032 17 6 0.8994 -5.0842 1.2564 18 6 2.5517 -6.0387 -0.2340 19 1 3.3212 -6.0780 0.5372 20 6 1.7604 -7.3665 -0.2769 21 6 2.5209 -8.1487 -1.3736 22 7 3.1458 -7.1277 -2.2227 23 6 3.1815 -5.9341 -1.6055 24 8 3.6497 -4.9207 -2.0793 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6084 2.0285 0.5138 29 1 3.1500 1.1384 0.5139 30 1 4.0302 4.4439 -0.8505 31 1 0.7591 -2.5294 0.8919 32 1 0.7585 -2.5306 -0.8881 33 1 3.0064 -3.5782 -0.8872 34 1 3.0063 -3.5767 0.8927 35 1 0.1857 -4.2685 1.3726 36 1 0.3651 -6.0339 1.2304 37 1 1.5942 -5.0814 2.0962 38 1 1.8133 -7.8832 0.6814 39 1 0.7245 -7.1939 -0.5687 40 1 1.8264 -8.7520 -1.9581 41 1 3.2840 -8.7832 -0.9230 42 1 3.4887 -7.2929 -3.1149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357009003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:31 Heat of formation + Delta-G solvation = -54.038064 kcal Electronic energy + Delta-G solvation = -22767.795787 eV Core-core repulsion = 19362.359400 eV Total energy + Delta-G solvation = -3405.436387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71229 -38.89230 -36.96430 -36.36874 -34.66627 -32.57722 -31.56362 -29.76427 -27.89346 -27.69186 -25.98441 -25.26897 -23.05341 -21.90618 -21.31481 -20.07668 -18.19763 -17.51885 -17.14970 -16.47585 -16.38475 -15.45032 -15.17108 -15.03431 -14.47584 -14.36994 -14.24734 -13.91357 -13.85503 -13.29096 -13.02531 -12.87458 -12.42714 -12.19012 -12.10778 -11.99404 -11.76472 -11.62353 -11.58818 -11.29368 -11.04762 -10.83173 -10.69573 -10.45649 -10.05926 -9.60960 -9.52873 -9.31557 -8.75104 -8.45708 -8.34815 -7.51922 -5.95631 -3.99572 2.43874 3.08945 3.36984 3.43230 3.48775 3.59506 3.72088 4.04470 4.16142 4.27209 4.54187 4.65936 4.73848 4.98966 5.11986 5.16075 5.29304 5.35306 5.36705 5.41411 5.47230 5.51850 5.62255 5.69909 5.75481 5.93160 6.07370 6.22958 6.29218 6.37956 6.56390 6.80639 6.95000 7.03016 7.15825 7.53633 7.66534 8.01580 8.13979 8.33675 8.54269 9.00764 9.23987 9.65347 11.12520 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.003733 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.715060 B = 7498.279571 C = 8281.028546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.606 5.606 3 C 0.245 3.755 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.505 3.495 13 O -0.541 6.541 14 C -0.130 4.130 15 C 0.047 3.953 16 N -0.526 5.526 17 C 0.018 3.982 18 C 0.049 3.951 19 H 0.079 0.921 20 C -0.127 4.127 21 C 0.104 3.896 22 N -0.735 5.735 23 C 0.526 3.474 24 O -0.505 6.505 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 -25.406 3.407 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.338 5.338 3 C 0.126 3.874 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.291 3.709 13 O -0.419 6.419 14 C -0.171 4.171 15 C -0.080 4.080 16 N -0.251 5.251 17 C -0.130 4.130 18 C -0.064 4.064 19 H 0.097 0.903 20 C -0.165 4.165 21 C -0.021 4.021 22 N -0.392 5.392 23 C 0.311 3.689 24 O -0.379 6.379 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.813 -24.616 2.943 25.994 hybrid contribution 0.723 0.266 -0.651 1.008 sum -7.091 -24.350 2.292 25.465 Atomic orbital electron populations 1.21597 0.81552 1.01424 1.01113 1.48147 1.06107 1.07877 1.71695 1.19280 0.92547 0.78135 0.97441 1.21466 1.36177 1.06109 0.92442 0.92462 1.24935 0.95399 0.96437 0.97426 1.69934 1.38676 1.14358 1.30695 0.86497 0.77591 0.78578 0.84797 1.20686 1.21108 1.19825 1.20279 0.88100 0.85099 0.77428 1.90673 1.13986 1.87296 1.49910 1.21590 0.99132 0.92813 1.03517 1.22336 0.95165 0.85683 1.04768 1.61997 1.26647 1.01424 1.35032 1.22513 0.98269 1.02666 0.89536 1.22270 0.95605 0.92599 0.95881 0.90298 1.22787 1.00651 0.93719 0.99335 1.22059 0.96772 0.90860 0.92435 1.46106 1.63163 1.10532 1.19391 1.20627 0.78125 0.82856 0.87333 1.90765 1.45725 1.31115 1.70284 0.93293 0.92651 0.91573 0.95121 0.93923 0.92814 0.90129 0.88958 0.86274 0.94180 0.90591 0.91272 0.95374 0.89263 0.88660 0.90114 0.91124 0.75023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.29 59.85 0.62 2.09 16 2 N -0.61 -13.76 2.86 -182.95 -0.52 -14.28 16 3 C 0.25 6.79 5.20 -5.19 -0.03 6.76 16 4 C -0.52 -15.71 9.39 -34.44 -0.32 -16.04 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 8 Si 0.90 22.95 29.54 -169.99 -5.02 17.92 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.50 11.40 7.67 -10.99 -0.08 11.31 16 13 O -0.54 -14.77 15.56 5.56 0.09 -14.69 16 14 C -0.13 -2.15 4.18 -27.88 -0.12 -2.27 16 15 C 0.05 0.78 4.11 -3.83 -0.02 0.77 16 16 N -0.53 -6.45 4.61 -234.90 -1.08 -7.54 16 17 C 0.02 0.16 9.09 60.06 0.55 0.71 16 18 C 0.05 0.51 2.65 -67.72 -0.18 0.33 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.13 -0.75 5.47 -24.99 -0.14 -0.89 16 21 C 0.10 0.53 7.79 -3.01 -0.02 0.51 16 22 N -0.73 -6.44 6.24 -59.09 -0.37 -6.81 16 23 C 0.53 6.96 8.00 -10.86 -0.09 6.88 16 24 O -0.51 -9.43 15.12 5.56 0.08 -9.34 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 27 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 28 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 29 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.08 1.09 5.81 -51.93 -0.30 0.79 16 32 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 33 H 0.12 2.43 4.95 -51.93 -0.26 2.17 16 34 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.08 0.68 6.47 -51.93 -0.34 0.35 16 36 H 0.07 0.46 6.72 -51.93 -0.35 0.11 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.58 7.75 -51.93 -0.40 0.18 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.41 3.06 8.96 -40.82 -0.37 2.69 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -38.48 339.30 -7.38 -45.86 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.47 Total: -1.11 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 0.07 Total: 11.85 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -1.24 Total: -55.61 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.17 Total: -24.03 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.48 -7.38 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357009003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.177 kcal (2) G-P(sol) polarization free energy of solvation -38.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds