Wall clock time and date at job start Tue Mar 31 2020 03:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00308 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00246 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00094 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47492 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47074 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00280 * 293.95507 * 16 15 14 18 18 C 1.46895 * 110.99988 * 169.99786 * 16 15 14 19 19 H 1.09006 * 110.43526 * 59.30379 * 18 16 15 20 20 C 1.54633 * 110.49007 * 181.84053 * 18 16 15 21 21 C 1.54685 * 101.67110 * 143.39779 * 20 18 16 22 22 N 1.46764 * 105.53177 * 334.74230 * 21 20 18 23 23 C 1.34417 * 111.30588 * 16.92475 * 22 21 20 24 24 O 1.21277 * 124.94884 * 179.62945 * 23 22 21 25 25 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 27 27 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 29 29 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 30 30 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46865 * 300.00571 * 14 12 2 32 32 H 1.09004 * 109.46641 * 59.99818 * 14 12 2 33 33 H 1.08996 * 109.46776 * 300.00408 * 15 14 12 34 34 H 1.09000 * 109.46955 * 60.00359 * 15 14 12 35 35 H 1.09000 * 109.47235 * 59.99688 * 17 16 15 36 36 H 1.09000 * 109.47509 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.47006 * 300.00041 * 17 16 15 38 38 H 1.08998 * 110.96721 * 261.60195 * 20 18 16 39 39 H 1.09004 * 110.96413 * 25.35731 * 20 18 16 40 40 H 1.08999 * 110.29211 * 215.68181 * 21 20 18 41 41 H 1.08994 * 110.21362 * 93.76066 * 21 20 18 42 42 H 0.96997 * 124.34793 * 196.94547 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 7 1.6453 -4.9074 0.0032 17 6 0.8994 -5.0842 1.2564 18 6 2.5517 -6.0387 -0.2340 19 1 3.3212 -6.0780 0.5372 20 6 1.7604 -7.3665 -0.2769 21 6 2.5209 -8.1487 -1.3736 22 7 3.1458 -7.1277 -2.2227 23 6 3.1815 -5.9341 -1.6055 24 8 3.6497 -4.9207 -2.0793 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6084 2.0285 0.5138 29 1 3.1500 1.1384 0.5139 30 1 4.0302 4.4439 -0.8505 31 1 0.7591 -2.5294 0.8919 32 1 0.7585 -2.5306 -0.8881 33 1 3.0064 -3.5782 -0.8872 34 1 3.0063 -3.5767 0.8927 35 1 0.1857 -4.2685 1.3726 36 1 0.3651 -6.0339 1.2304 37 1 1.5942 -5.0814 2.0962 38 1 1.8133 -7.8832 0.6814 39 1 0.7245 -7.1939 -0.5687 40 1 1.8264 -8.7520 -1.9581 41 1 3.2840 -8.7832 -0.9230 42 1 3.4887 -7.2929 -3.1149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357009003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:30 Heat of formation + Delta-G solvation = -86.511350 kcal Electronic energy + Delta-G solvation = -22769.203934 eV Core-core repulsion = 19362.359400 eV Total energy + Delta-G solvation = -3406.844534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59007 -40.63274 -38.02059 -37.28692 -36.56869 -34.77124 -32.77484 -30.75088 -29.57823 -28.61054 -27.38966 -26.63998 -24.85492 -22.70317 -22.50628 -20.97762 -19.90033 -18.74052 -18.36144 -18.08334 -17.80848 -17.13180 -16.69256 -16.32219 -16.00960 -15.48013 -15.44519 -14.96248 -14.67782 -14.57127 -14.37596 -13.95776 -13.76093 -13.64063 -13.49562 -13.45852 -13.20989 -12.93442 -12.79407 -12.58466 -12.50229 -12.33978 -12.22407 -12.04545 -11.86487 -11.72781 -10.68280 -10.66266 -10.58937 -10.05572 -9.45178 -9.40381 -8.25081 -6.39935 1.32476 1.36658 1.47116 1.48341 1.82742 2.27109 2.36640 2.44478 3.01750 3.04104 3.35398 3.60703 3.82071 4.06706 4.08647 4.15053 4.19843 4.38143 4.44147 4.56985 4.60790 4.69141 4.76790 4.81241 4.91765 4.94230 5.00973 5.02259 5.11295 5.15220 5.20753 5.23987 5.54468 5.83190 5.83677 5.89502 6.04403 6.04609 6.10610 6.66926 6.77636 7.25711 7.26265 7.48178 8.82025 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.003733 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.715060 B = 7498.279571 C = 8281.028546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.048 0.952 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.492 3.508 13 O -0.603 6.603 14 C -0.109 4.109 15 C 0.056 3.944 16 N -0.526 5.526 17 C 0.014 3.986 18 C 0.042 3.958 19 H 0.078 0.922 20 C -0.113 4.113 21 C 0.100 3.900 22 N -0.723 5.723 23 C 0.508 3.492 24 O -0.577 6.577 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.028 0.972 29 H -0.005 1.005 30 H 0.268 0.732 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 -28.070 3.365 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.585 4.585 5 H 0.066 0.934 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.281 3.719 13 O -0.484 6.484 14 C -0.149 4.149 15 C -0.072 4.072 16 N -0.251 5.251 17 C -0.133 4.133 18 C -0.070 4.070 19 H 0.095 0.905 20 C -0.150 4.150 21 C -0.024 4.024 22 N -0.378 5.378 23 C 0.294 3.706 24 O -0.456 6.456 25 H 0.073 0.927 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.013 0.987 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.046 0.954 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -10.649 -27.357 2.917 29.501 hybrid contribution 1.585 0.998 -0.599 1.966 sum -9.064 -26.360 2.317 27.971 Atomic orbital electron populations 1.21936 0.77613 1.04188 1.02376 1.48206 1.08579 1.06294 1.71255 1.18772 0.91144 0.80486 0.95897 1.21715 1.37039 1.06577 0.93140 0.93373 1.25869 0.94772 0.96366 1.02169 1.70042 1.38916 1.14792 1.32991 0.85412 0.78369 0.78085 0.78925 1.18269 1.20258 1.20355 1.21428 0.87815 0.86872 0.75802 1.90637 1.17006 1.88289 1.52508 1.21498 0.98642 0.88833 1.05939 1.22006 0.94968 0.88339 1.01889 1.61975 1.26197 0.99945 1.36993 1.22683 0.98017 1.04771 0.87803 1.22454 0.96251 0.94271 0.94007 0.90475 1.22873 1.00107 0.90738 1.01324 1.22429 0.97783 0.90026 0.92132 1.46232 1.61742 1.10133 1.19741 1.21306 0.77665 0.82987 0.88672 1.90733 1.48923 1.33868 1.72106 0.92685 0.87913 0.90853 0.95419 0.98685 0.92295 0.85921 0.87584 0.90535 0.96091 0.90064 0.87839 0.95391 0.85989 0.88049 0.87231 0.88890 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 10.29 127.77 1.31 3.89 16 2 N -0.61 -28.31 2.86 -851.11 -2.43 -30.74 16 3 C 0.26 14.98 5.20 85.63 0.45 15.43 16 4 C -0.55 -33.92 9.39 25.60 0.24 -33.68 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.44 5.46 84.65 0.46 0.90 16 7 N -0.93 -58.72 13.29 21.45 0.28 -58.43 16 8 Si 0.97 47.76 29.54 68.60 2.03 49.79 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.49 22.94 7.67 87.66 0.67 23.61 16 13 O -0.60 -35.24 15.56 -3.03 -0.05 -35.29 16 14 C -0.11 -3.52 4.18 29.85 0.12 -3.40 16 15 C 0.06 1.91 4.11 86.30 0.35 2.26 16 16 N -0.53 -12.13 4.61 -897.09 -4.13 -16.26 16 17 C 0.01 0.21 9.09 127.69 1.16 1.37 16 18 C 0.04 0.83 2.65 44.91 0.12 0.95 16 19 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 20 C -0.11 -0.87 5.47 31.72 0.17 -0.70 16 21 C 0.10 0.64 7.79 86.90 0.68 1.31 16 22 N -0.72 -11.80 6.24 -459.47 -2.87 -14.67 16 23 C 0.51 13.72 8.00 87.90 0.70 14.42 16 24 O -0.58 -23.27 15.12 -3.02 -0.05 -23.31 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 27 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 28 H 0.03 1.59 7.89 -2.38 -0.02 1.58 16 29 H 0.00 -0.33 7.42 -2.39 -0.02 -0.35 16 30 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.12 2.91 5.81 -2.39 -0.01 2.89 16 32 H 0.11 3.19 8.11 -2.38 -0.02 3.17 16 33 H 0.08 3.37 4.95 -2.39 -0.01 3.35 16 34 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 35 H 0.08 1.12 6.47 -2.39 -0.02 1.10 16 36 H 0.10 0.84 6.72 -2.39 -0.02 0.82 16 37 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.10 0.73 7.75 -2.38 -0.02 0.72 16 40 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.42 5.90 8.96 -92.71 -0.83 5.07 16 Total: -1.00 -92.90 339.30 -0.57 -93.47 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.19 Total: 9.08 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 6.45 Total: 26.37 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -9.15 Total: -120.11 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -0.09 Total: -58.60 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -92.90 -0.57 -93.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357009003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.954 kcal (2) G-P(sol) polarization free energy of solvation -92.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds