Wall clock time and date at job start Tue Mar 31 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46893 * 179.97438 * 15 14 12 17 17 C 1.46899 * 110.99600 * 66.05007 * 16 15 14 18 18 C 1.46899 * 111.00033 * 190.00136 * 16 15 14 19 19 H 1.09004 * 110.43454 * 300.70534 * 18 16 15 20 20 C 1.54629 * 110.48847 * 178.16060 * 18 16 15 21 21 C 1.54479 * 101.76823 * 216.52471 * 20 18 16 22 22 N 1.46763 * 105.46827 * 25.41657 * 21 20 18 23 23 C 1.34650 * 111.34437 * 342.86563 * 22 21 20 24 24 O 1.21273 * 125.07817 * 180.50910 * 23 22 21 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47057 * 299.99739 * 14 12 2 32 32 H 1.08996 * 109.47084 * 60.00703 * 14 12 2 33 33 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 34 34 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 35 35 H 1.08999 * 109.47144 * 60.00201 * 17 16 15 36 36 H 1.08996 * 109.47039 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.47299 * 299.99988 * 17 16 15 38 38 H 1.09003 * 110.96685 * 334.64803 * 20 18 16 39 39 H 1.08998 * 110.96698 * 98.40255 * 20 18 16 40 40 H 1.08995 * 110.24287 * 144.41615 * 21 20 18 41 41 H 1.09001 * 110.24724 * 266.33198 * 21 20 18 42 42 H 0.97011 * 124.34522 * 162.98864 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.8984 -5.0847 -1.2538 18 6 2.5518 -6.0387 0.2358 19 1 3.3207 -6.0782 -0.5358 20 6 1.7605 -7.3664 0.2799 21 6 2.5204 -8.1499 1.3731 22 7 3.1438 -7.1295 2.2241 23 6 3.1825 -5.9335 1.6069 24 8 3.6519 -4.9201 2.0796 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 4.0311 4.4434 0.8503 31 1 0.7591 -2.5302 0.8897 32 1 0.7585 -2.5298 -0.8903 33 1 3.0057 -3.5772 -0.8922 34 1 3.0069 -3.5779 0.8878 35 1 1.5926 -5.0823 -2.0941 36 1 0.3642 -6.0344 -1.2270 37 1 0.1847 -4.2691 -1.3698 38 1 0.7247 -7.1937 0.5723 39 1 1.8127 -7.8835 -0.6782 40 1 1.8254 -8.7541 1.9561 41 1 3.2835 -8.7838 0.9215 42 1 3.4861 -7.2957 3.1165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357009018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:33 Heat of formation + Delta-G solvation = -86.736338 kcal Electronic energy + Delta-G solvation = -22768.794609 eV Core-core repulsion = 19361.940318 eV Total energy + Delta-G solvation = -3406.854290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57905 -40.62749 -38.01935 -37.28968 -36.56594 -34.76884 -32.76895 -30.74927 -29.57672 -28.61690 -27.38849 -26.63887 -24.84669 -22.70165 -22.49674 -20.97553 -19.89663 -18.73064 -18.36045 -18.06544 -17.82150 -17.12903 -16.68212 -16.33813 -16.00784 -15.47581 -15.45397 -14.96456 -14.66882 -14.58012 -14.37795 -13.97725 -13.73236 -13.65900 -13.46885 -13.43633 -13.21800 -12.95179 -12.79657 -12.62004 -12.48649 -12.31064 -12.23786 -12.03501 -11.87842 -11.69538 -10.67850 -10.67193 -10.59437 -10.04992 -9.43745 -9.40892 -8.25153 -6.40086 1.32653 1.36149 1.47494 1.48370 1.83252 2.26971 2.36469 2.44467 3.01890 3.04124 3.35432 3.60948 3.82645 4.05204 4.10036 4.15476 4.21638 4.40043 4.43709 4.56817 4.60938 4.68888 4.73959 4.81418 4.91998 4.95338 5.00782 5.02890 5.11362 5.16169 5.21188 5.23935 5.54683 5.83323 5.83785 5.89381 6.04230 6.04554 6.10344 6.67422 6.78089 7.25712 7.26129 7.48479 8.82151 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.003733 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.773241 B = 7498.326817 C = 8281.007045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.049 0.951 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.492 3.508 13 O -0.603 6.603 14 C -0.109 4.109 15 C 0.056 3.944 16 N -0.526 5.526 17 C 0.014 3.986 18 C 0.042 3.958 19 H 0.077 0.923 20 C -0.113 4.113 21 C 0.100 3.900 22 N -0.724 5.724 23 C 0.508 3.492 24 O -0.576 6.576 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.093 0.907 28 H -0.005 1.005 29 H 0.027 0.973 30 H 0.268 0.732 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 -28.077 -3.127 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.067 0.933 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.188 1.188 12 C 0.281 3.719 13 O -0.485 6.485 14 C -0.149 4.149 15 C -0.072 4.072 16 N -0.251 5.251 17 C -0.133 4.133 18 C -0.070 4.070 19 H 0.095 0.905 20 C -0.151 4.151 21 C -0.023 4.023 22 N -0.380 5.380 23 C 0.294 3.706 24 O -0.455 6.455 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.013 0.987 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -10.650 -27.366 -2.677 29.487 hybrid contribution 1.596 1.001 0.542 1.961 sum -9.053 -26.365 -2.135 27.958 Atomic orbital electron populations 1.21951 0.77628 1.03983 1.02765 1.48211 1.08576 1.06272 1.71279 1.18748 0.91087 0.80537 0.95927 1.21749 1.36945 1.06555 0.93107 0.93264 1.25878 0.94791 0.96379 1.02176 1.70053 1.38931 1.14832 1.32952 0.85354 0.77940 0.78490 0.78943 1.19478 1.20700 1.18774 1.21431 0.87815 0.86879 0.75817 1.90636 1.17003 1.88290 1.52538 1.21493 0.98635 0.88845 1.05929 1.22010 0.94970 0.88341 1.01879 1.61984 1.26145 0.99953 1.37006 1.22678 0.98004 1.04755 0.87821 1.22455 0.96240 0.94266 0.94036 0.90492 1.22836 1.00121 0.90749 1.01368 1.22387 0.97781 0.90044 0.92101 1.46287 1.61898 1.10099 1.19680 1.21352 0.77623 0.82970 0.88632 1.90731 1.48825 1.33778 1.72148 0.90677 0.91613 0.88888 0.98706 0.95498 0.92309 0.87437 0.86092 0.96136 0.90493 0.95422 0.87839 0.90091 0.88046 0.86031 0.87234 0.88904 0.74574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.50 10.24 127.77 1.31 3.81 16 2 N -0.61 -28.29 2.86 -851.12 -2.43 -30.72 16 3 C 0.26 14.98 5.16 85.63 0.44 15.42 16 4 C -0.54 -33.75 9.39 25.60 0.24 -33.51 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -58.69 13.29 21.45 0.28 -58.41 16 8 Si 0.97 47.69 29.54 68.60 2.03 49.71 16 9 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.49 22.92 7.67 87.66 0.67 23.59 16 13 O -0.60 -35.22 15.56 -3.02 -0.05 -35.27 16 14 C -0.11 -3.52 4.18 29.85 0.12 -3.40 16 15 C 0.06 1.91 4.11 86.30 0.35 2.26 16 16 N -0.53 -12.13 4.61 -897.07 -4.13 -16.26 16 17 C 0.01 0.21 9.09 127.69 1.16 1.38 16 18 C 0.04 0.83 2.65 44.91 0.12 0.95 16 19 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 20 C -0.11 -0.88 5.45 31.65 0.17 -0.71 16 21 C 0.10 0.64 7.78 86.83 0.68 1.31 16 22 N -0.72 -11.77 6.25 -459.50 -2.87 -14.64 16 23 C 0.51 13.70 8.02 87.86 0.70 14.40 16 24 O -0.58 -23.12 15.12 -3.01 -0.05 -23.17 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 27 H 0.09 2.31 6.44 -2.38 -0.02 2.30 16 28 H -0.01 -0.35 7.42 -2.39 -0.02 -0.36 16 29 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 31 H 0.11 3.20 7.40 -2.39 -0.02 3.18 16 32 H 0.12 2.92 6.52 -2.39 -0.02 2.90 16 33 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 34 H 0.08 3.37 4.95 -2.38 -0.01 3.36 16 35 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.85 6.72 -2.39 -0.02 0.84 16 37 H 0.08 1.13 6.47 -2.39 -0.02 1.12 16 38 H 0.10 0.74 7.75 -2.39 -0.02 0.72 16 39 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.42 5.87 8.96 -92.70 -0.83 5.03 16 Total: -1.00 -92.49 339.58 -0.58 -93.07 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.19 Total: 9.31 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 6.44 Total: 26.37 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -9.15 Total: -120.03 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -0.09 Total: -58.44 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -92.49 -0.58 -93.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357009018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.338 kcal (2) G-P(sol) polarization free energy of solvation -92.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds