Wall clock time and date at job start Tue Mar 31 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47013 * 111.00397 * 2 1 4 4 C 1.53094 * 109.25758 * 182.38992 * 3 2 1 5 5 O 1.43007 * 109.25944 * 303.14578 * 4 3 2 6 6 C 1.43022 * 113.73870 * 58.67672 * 5 4 3 7 7 C 1.47018 * 110.99421 * 123.63049 * 2 1 3 8 8 H 1.08998 * 109.51253 * 297.53903 * 7 2 1 9 9 C 1.50698 * 109.50838 * 57.67289 * 7 2 1 10 10 O 1.21285 * 119.99913 * 24.47515 * 9 7 2 11 11 N 1.34773 * 120.00418 * 204.47148 * 9 7 2 12 12 C 1.46973 * 120.58945 * 4.64518 * 11 9 7 13 13 C 1.53806 * 108.39577 * 124.75839 * 12 11 9 14 14 N 1.46959 * 108.58483 * 49.63702 * 13 12 11 15 15 C 1.36933 * 120.59943 * 124.66587 * 14 13 12 16 16 H 1.07989 * 120.00582 * 212.17449 * 15 14 13 17 17 C 1.38818 * 119.99654 * 32.17858 * 15 14 13 18 18 N 1.31619 * 120.00181 * 10.41395 * 17 15 14 19 19 Si 1.86803 * 120.00087 * 190.41821 * 17 15 14 20 20 H 1.48502 * 109.47207 * 59.99463 * 19 17 15 21 21 H 1.48495 * 109.47333 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46829 * 300.00065 * 19 17 15 23 23 C 1.46967 * 118.81140 * 304.64502 * 14 13 12 24 24 C 1.46959 * 120.59979 * 184.92073 * 11 9 7 25 25 H 1.09004 * 109.46677 * 53.31556 * 1 2 3 26 26 H 1.09000 * 109.47619 * 173.31335 * 1 2 3 27 27 H 1.08999 * 109.47131 * 293.31852 * 1 2 3 28 28 H 1.09002 * 109.49966 * 302.32357 * 3 2 1 29 29 H 1.08998 * 109.50781 * 62.45023 * 3 2 1 30 30 H 1.09000 * 109.50807 * 63.08651 * 4 3 2 31 31 H 1.09002 * 109.50446 * 183.16801 * 4 3 2 32 32 H 1.09001 * 109.50693 * 61.25933 * 6 5 4 33 33 H 1.09002 * 109.50799 * 181.35120 * 6 5 4 34 34 H 1.09004 * 109.60800 * 244.53976 * 12 11 9 35 35 H 1.09000 * 109.60791 * 5.04814 * 12 11 9 36 36 H 1.09009 * 109.74218 * 289.84329 * 13 12 11 37 37 H 1.09007 * 109.53380 * 169.30611 * 13 12 11 38 38 H 0.96997 * 120.00227 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.61084 * 295.48317 * 23 14 13 40 40 H 1.08991 * 109.61303 * 174.96807 * 23 14 13 41 41 H 1.09007 * 109.60961 * 354.95550 * 24 11 9 42 42 H 1.09001 * 109.61269 * 115.46051 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3262 -0.0603 5 8 4.0174 0.5574 1.0404 6 6 3.5249 -0.7850 1.0711 7 6 1.9957 -0.7602 1.1429 8 1 1.6827 -0.2842 2.0721 9 6 1.4668 -2.1705 1.0959 10 8 1.1151 -2.6514 0.0394 11 7 1.3848 -2.8976 2.2277 12 6 1.7109 -2.2960 3.5284 13 6 0.5068 -2.4854 4.4664 14 7 0.0954 -3.8955 4.4215 15 6 0.0120 -4.6342 5.5715 16 1 0.2259 -5.6925 5.5503 17 6 -0.3477 -4.0226 6.7647 18 7 -0.8053 -2.7886 6.7599 19 14 -0.1820 -4.9510 8.3772 20 1 1.2377 -5.3343 8.5841 21 1 -0.6280 -4.0829 9.4963 22 1 -1.0234 -6.1738 8.3329 23 6 -0.2254 -4.4987 3.1203 24 6 0.9734 -4.3077 2.1828 25 1 -0.3633 0.6140 -0.8242 26 1 -0.3634 -1.0206 -0.1197 27 1 -0.3633 0.4068 0.9437 28 1 1.6135 1.9090 -0.8683 29 1 1.6828 1.8826 0.9109 30 1 3.8386 0.8642 -0.9963 31 1 3.9222 2.3397 -0.0038 32 1 3.8385 -1.3085 0.1679 33 1 3.9227 -1.2988 1.9463 34 1 2.5873 -2.7884 3.9498 35 1 1.9124 -1.2326 3.3993 36 1 -0.3184 -1.8529 4.1387 37 1 0.7924 -2.2198 5.4843 38 1 -1.0563 -2.3611 7.5936 39 1 -1.1025 -4.0096 2.6967 40 1 -0.4232 -5.5627 3.2491 41 1 0.6877 -4.5732 1.1649 42 1 1.7984 -4.9401 2.5106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408049542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:09 Heat of formation + Delta-G solvation = -28.600173 kcal Electronic energy + Delta-G solvation = -23964.802787 eV Core-core repulsion = 20560.469469 eV Total energy + Delta-G solvation = -3404.333317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51921 -38.74659 -36.85111 -35.53632 -33.93048 -32.06348 -30.97132 -30.13468 -28.86180 -26.97686 -24.90950 -24.25326 -23.55630 -22.85252 -21.29624 -20.07286 -18.63537 -17.46556 -16.58582 -16.45708 -16.16111 -15.66489 -15.13411 -15.01212 -14.63184 -14.43361 -14.08087 -13.83763 -13.66943 -13.37400 -13.31533 -12.98606 -12.61174 -12.35051 -12.04069 -11.77376 -11.63825 -11.36853 -11.21812 -10.87444 -10.83379 -10.76316 -10.54829 -10.27084 -10.12046 -9.96203 -9.86999 -9.29057 -8.63434 -8.42135 -8.27794 -6.70284 -5.89456 -3.40189 2.82707 3.19634 3.32137 3.37863 3.38666 3.62270 3.88533 4.39922 4.67820 4.70949 4.83277 4.91569 5.03289 5.09413 5.26971 5.31061 5.42371 5.48039 5.49898 5.53818 5.63974 5.72488 5.80300 5.83626 5.91810 6.04308 6.08886 6.15065 6.30090 6.39338 6.68922 6.77112 6.84528 6.88875 6.94799 7.17068 7.43225 7.67618 7.84968 8.34760 8.51260 9.08899 9.69210 10.28044 11.18005 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.004506 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.053796 B = 6211.836557 C = 6533.163016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.017 3.983 4 C 0.061 3.939 5 O -0.379 6.379 6 C 0.079 3.921 7 C 0.029 3.971 8 H 0.076 0.924 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.595 5.595 12 C 0.074 3.926 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.258 4.258 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.906 5.906 19 Si 0.908 3.092 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.132 3.868 24 C 0.096 3.904 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.102 0.898 38 H 0.256 0.744 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 7.409 -10.802 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.111 4.111 4 C -0.016 4.016 5 O -0.297 6.297 6 C 0.001 3.999 7 C -0.083 4.083 8 H 0.093 0.907 9 C 0.303 3.697 10 O -0.414 6.414 11 N -0.328 5.328 12 C -0.050 4.050 13 C 0.033 3.967 14 N -0.313 5.313 15 C -0.387 4.387 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.550 5.550 19 Si 0.737 3.263 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.208 1.208 23 C 0.005 3.995 24 C -0.028 4.028 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.959 7.078 -11.480 15.176 hybrid contribution -0.574 -0.019 1.551 1.654 sum 6.385 7.059 -9.929 13.755 Atomic orbital electron populations 1.22500 0.86074 1.04021 1.00184 1.61971 1.09010 1.12482 1.41008 1.22856 0.96481 0.89767 1.02005 1.22708 0.92290 0.96453 0.90164 1.88013 1.69483 1.23660 1.48545 1.22519 0.89765 0.84191 1.03387 1.22387 0.97666 0.93893 0.94352 0.90679 1.20026 0.78931 0.86873 0.83839 1.90640 1.49206 1.71874 1.29715 1.48112 1.65705 1.12302 1.06669 1.22921 1.01555 0.96824 0.83746 1.21251 0.91120 0.85694 0.98597 1.43920 1.77414 1.08481 1.01524 1.19154 1.40671 0.93060 0.85825 0.91626 1.25205 0.98093 0.96926 0.98979 1.69930 1.45726 1.13042 1.26256 0.86300 0.78050 0.79041 0.82919 1.20845 1.21542 1.20763 1.21306 0.93277 0.97960 0.86962 1.22222 0.98989 0.80435 1.01152 0.91196 0.89730 0.95535 0.89253 0.93732 0.92076 0.88253 0.91579 0.87756 0.91505 0.91087 0.95992 0.88046 0.93351 0.95918 0.91480 0.89963 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.13 60.06 0.55 0.82 16 2 N -0.52 -7.26 4.53 -235.97 -1.07 -8.33 16 3 C 0.02 0.19 5.66 -3.71 -0.02 0.16 16 4 C 0.06 0.62 7.01 37.21 0.26 0.88 16 5 O -0.38 -4.86 10.83 -35.23 -0.38 -5.25 16 6 C 0.08 1.04 6.28 37.21 0.23 1.28 16 7 C 0.03 0.43 1.62 -68.75 -0.11 0.32 16 8 H 0.08 1.13 6.09 -51.93 -0.32 0.81 16 9 C 0.52 9.03 6.02 -10.99 -0.07 8.96 16 10 O -0.54 -10.73 14.52 5.55 0.08 -10.65 16 11 N -0.59 -10.63 2.94 -172.21 -0.51 -11.13 16 12 C 0.07 1.30 6.49 -3.36 -0.02 1.28 16 13 C 0.16 3.59 5.47 -3.37 -0.02 3.57 16 14 N -0.59 -14.21 2.96 -171.77 -0.51 -14.72 16 15 C -0.26 -6.76 9.57 -15.06 -0.14 -6.91 16 16 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 17 C 0.01 0.18 5.05 -17.43 -0.09 0.10 16 18 N -0.91 -25.18 11.06 55.49 0.61 -24.57 16 19 Si 0.91 20.88 29.57 -169.99 -5.03 15.86 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.13 2.74 6.67 -3.59 -0.02 2.71 16 24 C 0.10 1.74 6.60 -3.60 -0.02 1.72 16 25 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 26 H 0.08 1.38 6.17 -51.93 -0.32 1.06 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.10 5.37 -51.93 -0.28 0.82 16 36 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 41 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -30.40 325.68 -7.98 -38.38 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.62 Total: 0.60 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 0.52 Total: 14.90 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -1.47 Total: -58.75 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.30 Total: -15.90 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.40 -7.98 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408049542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.781 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds