Wall clock time and date at job start Tue Mar 31 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47013 * 111.00397 * 2 1 4 4 C 1.53094 * 109.25758 * 182.38992 * 3 2 1 5 5 O 1.43007 * 109.25944 * 303.14578 * 4 3 2 6 6 C 1.43022 * 113.73870 * 58.67672 * 5 4 3 7 7 C 1.47018 * 110.99421 * 123.63049 * 2 1 3 8 8 H 1.08998 * 109.51253 * 297.53903 * 7 2 1 9 9 C 1.50698 * 109.50838 * 57.67289 * 7 2 1 10 10 O 1.21285 * 119.99913 * 24.47515 * 9 7 2 11 11 N 1.34773 * 120.00418 * 204.47148 * 9 7 2 12 12 C 1.46973 * 120.58945 * 4.64518 * 11 9 7 13 13 C 1.53806 * 108.39577 * 124.75839 * 12 11 9 14 14 N 1.46959 * 108.58483 * 49.63702 * 13 12 11 15 15 C 1.36933 * 120.59943 * 124.66587 * 14 13 12 16 16 H 1.07989 * 120.00582 * 212.17449 * 15 14 13 17 17 C 1.38818 * 119.99654 * 32.17858 * 15 14 13 18 18 N 1.31619 * 120.00181 * 10.41395 * 17 15 14 19 19 Si 1.86803 * 120.00087 * 190.41821 * 17 15 14 20 20 H 1.48502 * 109.47207 * 59.99463 * 19 17 15 21 21 H 1.48495 * 109.47333 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46829 * 300.00065 * 19 17 15 23 23 C 1.46967 * 118.81140 * 304.64502 * 14 13 12 24 24 C 1.46959 * 120.59979 * 184.92073 * 11 9 7 25 25 H 1.09004 * 109.46677 * 53.31556 * 1 2 3 26 26 H 1.09000 * 109.47619 * 173.31335 * 1 2 3 27 27 H 1.08999 * 109.47131 * 293.31852 * 1 2 3 28 28 H 1.09002 * 109.49966 * 302.32357 * 3 2 1 29 29 H 1.08998 * 109.50781 * 62.45023 * 3 2 1 30 30 H 1.09000 * 109.50807 * 63.08651 * 4 3 2 31 31 H 1.09002 * 109.50446 * 183.16801 * 4 3 2 32 32 H 1.09001 * 109.50693 * 61.25933 * 6 5 4 33 33 H 1.09002 * 109.50799 * 181.35120 * 6 5 4 34 34 H 1.09004 * 109.60800 * 244.53976 * 12 11 9 35 35 H 1.09000 * 109.60791 * 5.04814 * 12 11 9 36 36 H 1.09009 * 109.74218 * 289.84329 * 13 12 11 37 37 H 1.09007 * 109.53380 * 169.30611 * 13 12 11 38 38 H 0.96997 * 120.00227 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.61084 * 295.48317 * 23 14 13 40 40 H 1.08991 * 109.61303 * 174.96807 * 23 14 13 41 41 H 1.09007 * 109.60961 * 354.95550 * 24 11 9 42 42 H 1.09001 * 109.61269 * 115.46051 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3262 -0.0603 5 8 4.0174 0.5574 1.0404 6 6 3.5249 -0.7850 1.0711 7 6 1.9957 -0.7602 1.1429 8 1 1.6827 -0.2842 2.0721 9 6 1.4668 -2.1705 1.0959 10 8 1.1151 -2.6514 0.0394 11 7 1.3848 -2.8976 2.2277 12 6 1.7109 -2.2960 3.5284 13 6 0.5068 -2.4854 4.4664 14 7 0.0954 -3.8955 4.4215 15 6 0.0120 -4.6342 5.5715 16 1 0.2259 -5.6925 5.5503 17 6 -0.3477 -4.0226 6.7647 18 7 -0.8053 -2.7886 6.7599 19 14 -0.1820 -4.9510 8.3772 20 1 1.2377 -5.3343 8.5841 21 1 -0.6280 -4.0829 9.4963 22 1 -1.0234 -6.1738 8.3329 23 6 -0.2254 -4.4987 3.1203 24 6 0.9734 -4.3077 2.1828 25 1 -0.3633 0.6140 -0.8242 26 1 -0.3634 -1.0206 -0.1197 27 1 -0.3633 0.4068 0.9437 28 1 1.6135 1.9090 -0.8683 29 1 1.6828 1.8826 0.9109 30 1 3.8386 0.8642 -0.9963 31 1 3.9222 2.3397 -0.0038 32 1 3.8385 -1.3085 0.1679 33 1 3.9227 -1.2988 1.9463 34 1 2.5873 -2.7884 3.9498 35 1 1.9124 -1.2326 3.3993 36 1 -0.3184 -1.8529 4.1387 37 1 0.7924 -2.2198 5.4843 38 1 -1.0563 -2.3611 7.5936 39 1 -1.1025 -4.0096 2.6967 40 1 -0.4232 -5.5627 3.2491 41 1 0.6877 -4.5732 1.1649 42 1 1.7984 -4.9401 2.5106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408049542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:08 Heat of formation + Delta-G solvation = -50.362484 kcal Electronic energy + Delta-G solvation = -23965.746471 eV Core-core repulsion = 20560.469469 eV Total energy + Delta-G solvation = -3405.277002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76646 -39.96165 -38.42853 -36.61711 -35.64951 -33.56698 -32.45190 -31.69416 -29.91598 -28.67610 -26.20767 -25.29028 -25.18444 -24.39579 -22.63346 -21.43950 -20.12426 -18.99294 -17.94627 -17.57821 -17.55140 -16.87994 -16.67543 -16.22552 -15.99599 -15.70869 -15.49451 -15.30913 -15.14507 -14.99279 -14.86422 -14.22440 -13.98481 -13.40495 -13.32286 -13.27066 -13.04589 -12.73606 -12.67423 -12.51526 -12.31704 -12.24400 -12.03629 -11.93236 -11.75179 -11.66758 -11.02578 -10.65339 -10.54484 -9.85703 -9.48338 -8.62798 -7.89464 -5.44221 1.45100 1.50085 1.51033 1.57702 1.86100 2.49829 2.63734 2.85324 3.26858 3.42423 3.54699 3.67107 3.83324 3.91207 4.13717 4.20705 4.22885 4.25251 4.34519 4.42892 4.47346 4.51224 4.58027 4.61684 4.63724 4.73770 4.78737 4.82426 4.91218 4.94758 5.04336 5.20273 5.47480 5.58757 5.62681 5.68879 5.86758 6.01561 6.36625 6.41603 7.09656 7.11019 7.75869 8.31208 9.15246 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.004506 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.053796 B = 6211.836557 C = 6533.163016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.017 3.983 4 C 0.057 3.943 5 O -0.388 6.388 6 C 0.085 3.915 7 C 0.034 3.966 8 H 0.073 0.927 9 C 0.519 3.481 10 O -0.563 6.563 11 N -0.599 5.599 12 C 0.092 3.908 13 C 0.166 3.834 14 N -0.607 5.607 15 C -0.268 4.268 16 H 0.069 0.931 17 C -0.042 4.042 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.278 1.278 23 C 0.133 3.867 24 C 0.106 3.894 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.023 0.977 28 H 0.113 0.887 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.096 0.904 36 H -0.006 1.006 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.006 0.994 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 7.996 -11.373 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.111 4.111 4 C -0.020 4.020 5 O -0.306 6.306 6 C 0.007 3.993 7 C -0.078 4.078 8 H 0.091 0.909 9 C 0.307 3.693 10 O -0.441 6.441 11 N -0.332 5.332 12 C -0.032 4.032 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.398 4.398 16 H 0.087 0.913 17 C -0.238 4.238 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.199 1.199 21 H -0.221 1.221 22 H -0.204 1.204 23 C 0.006 3.994 24 C -0.018 4.018 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.012 0.988 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.459 7.667 -12.077 16.619 hybrid contribution -1.096 -0.175 1.640 1.980 sum 7.364 7.492 -10.437 14.808 Atomic orbital electron populations 1.22424 0.86366 1.02531 1.01028 1.62005 1.08919 1.14398 1.40520 1.22997 0.96946 0.88012 1.03104 1.22959 0.91809 0.97659 0.89554 1.88009 1.69559 1.23377 1.49674 1.22466 0.88347 0.84811 1.03670 1.22355 0.98787 0.91955 0.94723 0.90931 1.20493 0.78013 0.87725 0.83081 1.90626 1.50250 1.72666 1.30604 1.48161 1.65848 1.12267 1.06917 1.22668 0.99312 0.98592 0.82605 1.21056 0.91986 0.84632 0.98329 1.44177 1.77915 1.08909 1.02106 1.19487 1.40022 0.93509 0.86768 0.91285 1.25925 0.98215 0.97710 1.01950 1.70094 1.47008 1.14434 1.26571 0.85295 0.78223 0.77670 0.78923 1.19946 1.22086 1.20385 1.21363 0.93916 0.97973 0.86129 1.22047 0.98107 0.81121 1.00495 0.88797 0.92769 0.95831 0.86925 0.93706 0.91772 0.85293 0.91967 0.86882 0.90390 0.88565 0.98756 0.90516 0.93854 0.97647 0.90738 0.89521 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.13 127.69 1.17 1.82 16 2 N -0.53 -13.99 4.53 -900.46 -4.08 -18.06 16 3 C 0.02 0.32 5.66 86.31 0.49 0.80 16 4 C 0.06 0.98 7.01 72.01 0.50 1.48 16 5 O -0.39 -8.94 10.83 -148.98 -1.61 -10.55 16 6 C 0.08 2.07 6.28 72.02 0.45 2.52 16 7 C 0.03 0.95 1.62 44.18 0.07 1.02 16 8 H 0.07 2.07 6.09 -2.39 -0.01 2.06 16 9 C 0.52 17.71 6.02 87.66 0.53 18.24 16 10 O -0.56 -22.26 14.52 -3.04 -0.04 -22.30 16 11 N -0.60 -20.92 2.94 -817.14 -2.40 -23.33 16 12 C 0.09 3.18 6.49 86.56 0.56 3.74 16 13 C 0.17 7.59 5.47 86.56 0.47 8.06 16 14 N -0.61 -29.51 2.96 -697.37 -2.06 -31.57 16 15 C -0.27 -14.10 9.57 84.04 0.80 -13.30 16 16 H 0.07 3.52 7.85 -2.92 -0.02 3.49 16 17 C -0.04 -2.25 5.05 84.86 0.43 -1.82 16 18 N -0.94 -53.07 11.06 21.65 0.24 -52.83 16 19 Si 0.97 42.98 29.57 68.60 2.03 45.01 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 23 C 0.13 5.53 6.67 86.42 0.58 6.11 16 24 C 0.11 3.78 6.60 86.42 0.57 4.35 16 25 H 0.09 1.99 8.10 -2.39 -0.02 1.97 16 26 H 0.05 1.77 6.17 -2.39 -0.01 1.76 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.11 1.61 8.12 -2.39 -0.02 1.59 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 2.51 8.13 -2.39 -0.02 2.49 16 34 H 0.08 2.56 8.14 -2.38 -0.02 2.55 16 35 H 0.10 2.84 5.37 -2.39 -0.01 2.83 16 36 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 37 H 0.08 3.89 6.07 -2.38 -0.01 3.88 16 38 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.07 2.94 7.93 -2.39 -0.02 2.92 16 41 H 0.09 3.03 6.99 -2.38 -0.02 3.01 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -65.42 325.68 -0.30 -65.73 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.00 Total: 14.89 kcal Atomic # 6 Polarization: 26.39 SS G_CDS: 6.62 Total: 33.01 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -8.30 Total: -125.79 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.66 Total: -32.85 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.42 -0.30 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408049542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.364 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds