Wall clock time and date at job start Tue Mar 31 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47140 * 2 1 4 4 C 1.53002 * 109.47140 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47101 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00015 * 269.99941 * 5 4 3 7 7 O 1.21690 * 120.00327 * 180.02562 * 6 5 4 8 8 C 1.46376 * 119.99594 * 359.97438 * 6 5 4 9 9 H 1.07994 * 120.00539 * 0.02562 * 8 6 5 10 10 C 1.40053 * 119.99432 * 179.97438 * 8 6 5 11 11 N 1.30666 * 120.00679 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99714 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46980 * 89.99858 * 12 10 8 14 14 H 1.48493 * 109.47135 * 209.99927 * 12 10 8 15 15 H 1.48504 * 109.46987 * 330.00388 * 12 10 8 16 16 C 1.46500 * 120.00364 * 89.99825 * 5 4 3 17 17 H 1.08998 * 109.46845 * 0.02562 * 16 5 4 18 18 C 1.52997 * 109.47473 * 240.00065 * 16 5 4 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 16 5 20 20 C 1.52996 * 109.47328 * 60.00126 * 19 18 16 21 21 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 20 19 23 23 H 1.09001 * 109.47375 * 59.99908 * 22 21 20 24 24 O 1.42900 * 109.47084 * 180.02562 * 22 21 20 25 25 C 1.42904 * 113.99982 * 269.99592 * 24 22 21 26 26 H 1.08995 * 109.47291 * 59.99785 * 1 2 3 27 27 H 1.09001 * 109.47423 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47041 * 299.99913 * 1 2 3 29 29 H 1.09000 * 109.47041 * 240.00087 * 2 1 3 30 30 H 1.09002 * 109.46684 * 120.00394 * 2 1 3 31 31 H 1.09000 * 109.47082 * 60.00112 * 3 2 1 32 32 H 1.08995 * 109.47204 * 300.00268 * 3 2 1 33 33 H 1.09000 * 109.47041 * 60.00087 * 4 3 2 34 34 H 1.09004 * 109.47034 * 299.99709 * 4 3 2 35 35 H 0.96995 * 120.00679 * 180.02562 * 11 10 8 36 36 H 1.09002 * 109.47153 * 59.99757 * 18 16 5 37 37 H 1.09001 * 109.46832 * 299.99948 * 18 16 5 38 38 H 1.09004 * 109.46724 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.47194 * 299.99650 * 19 18 16 40 40 H 1.08992 * 109.47554 * 59.99639 * 20 19 18 41 41 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 42 42 H 1.09002 * 109.47097 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47142 * 300.00176 * 21 20 19 44 44 H 1.09004 * 109.46614 * 59.99743 * 25 24 22 45 45 H 1.08993 * 109.47474 * 179.97438 * 25 24 22 46 46 H 1.09005 * 109.47339 * 300.00461 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2825 3.4597 -1.1670 7 8 4.6886 4.6068 -1.1665 8 6 4.0385 2.7701 -2.4349 9 1 3.6785 1.7519 -2.4354 10 6 4.2709 3.4313 -3.6474 11 7 4.7060 4.6634 -3.6470 12 14 3.9589 2.5516 -5.2656 13 1 2.5560 2.7847 -5.6932 14 1 4.8855 3.0759 -6.3007 15 1 4.1870 1.0948 -5.0891 16 6 4.3030 3.5135 1.2690 17 1 4.0677 2.8451 2.0971 18 6 3.4185 4.7592 1.3511 19 6 3.6746 5.4800 2.6762 20 6 5.1456 5.8930 2.7562 21 6 6.0301 4.6472 2.6741 22 6 5.7741 3.9264 1.3491 23 1 6.0096 4.5945 0.5206 24 8 6.5998 2.7626 1.2726 25 6 7.8774 2.9945 0.6758 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9285 0.8892 35 1 4.8666 5.1214 -4.4868 36 1 2.3705 4.4651 1.2936 37 1 3.6543 5.4275 0.5229 38 1 3.0441 6.3673 2.7348 39 1 3.4391 4.8120 3.5046 40 1 5.3811 6.5610 1.9278 41 1 5.3279 6.4069 3.7000 42 1 7.0781 4.9413 2.7315 43 1 5.7947 3.9792 3.5026 44 1 8.4215 3.7373 1.2594 45 1 8.4434 2.0633 0.6554 46 1 7.7420 3.3603 -0.3420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408520408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:25 Heat of formation + Delta-G solvation = -110.264965 kcal Electronic energy + Delta-G solvation = -24599.706684 eV Core-core repulsion = 21295.372460 eV Total energy + Delta-G solvation = -3304.334225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.31305 -37.00940 -35.65832 -35.16170 -33.06860 -32.31992 -29.86670 -29.37143 -27.47717 -26.14881 -25.59414 -22.85100 -22.18057 -21.70840 -20.60544 -19.64366 -18.80512 -16.45602 -15.96116 -15.52888 -15.18102 -14.79346 -14.58401 -14.45374 -14.03496 -13.70342 -13.41653 -13.08429 -13.04150 -12.63395 -12.56265 -12.27627 -12.11863 -11.79531 -11.54524 -11.20568 -11.17107 -11.00839 -10.88424 -10.80926 -10.76327 -10.65132 -10.38923 -10.25359 -10.23645 -10.15034 -10.05690 -9.97421 -9.54801 -8.92178 -8.75661 -7.39236 -7.05961 -6.14209 -4.58239 3.14240 3.21972 3.24642 4.10896 4.35553 4.52482 4.59446 5.18573 5.29024 5.34785 5.36403 5.43367 5.51853 5.67095 5.71595 5.79026 5.83746 5.85715 5.93427 5.94811 5.98145 6.06058 6.10118 6.11683 6.19598 6.21398 6.24015 6.28146 6.34868 6.44480 6.46088 6.51031 6.53552 6.57892 6.70935 6.83231 6.86507 6.99436 7.13923 7.49322 7.74667 7.88312 8.24256 8.45761 9.07494 9.53409 10.62510 10.82988 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011650 B = 0.007490 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.765017 B = 3737.513295 C = 4976.671578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.136 4.136 4 C 0.134 3.866 5 N -0.632 5.632 6 C 0.565 3.435 7 O -0.576 6.576 8 C -0.540 4.540 9 H 0.070 0.930 10 C 0.089 3.911 11 N -0.768 5.768 12 Si 0.899 3.101 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.175 3.825 17 H 0.063 0.937 18 C -0.133 4.133 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.136 4.136 22 C 0.072 3.928 23 H 0.093 0.907 24 O -0.382 6.382 25 C 0.038 3.962 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.028 0.972 45 H 0.074 0.926 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -3.980 9.451 10.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.009 3.991 5 N -0.368 5.368 6 C 0.371 3.629 7 O -0.460 6.460 8 C -0.577 4.577 9 H 0.088 0.912 10 C -0.130 4.130 11 N -0.397 5.397 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.189 1.189 16 C 0.069 3.931 17 H 0.081 0.919 18 C -0.171 4.171 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.174 4.174 22 C 0.013 3.987 23 H 0.111 0.889 24 O -0.300 6.300 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.339 -3.372 9.395 10.071 hybrid contribution -0.064 -0.315 -0.876 0.933 sum -1.403 -3.688 8.519 9.389 Atomic orbital electron populations 1.21755 0.96515 1.00755 1.01656 1.21464 0.95282 0.97693 1.01505 1.22077 0.97674 0.95534 1.02221 1.21171 0.92064 0.84641 1.01200 1.47950 1.70901 1.13061 1.04843 1.18082 0.77135 0.85603 0.82111 1.90507 1.50664 1.18557 1.86274 1.21025 1.47054 1.00249 0.89361 0.91151 1.25687 0.92893 0.94346 1.00062 1.70007 1.32597 1.10115 1.26996 0.86500 0.78647 0.80482 0.81923 1.19835 1.20598 1.18929 1.20578 0.91588 0.93361 0.87524 0.91889 1.21984 0.98812 0.98155 0.98195 1.21519 0.96018 0.99757 0.97984 1.21461 0.95173 0.97307 1.01284 1.22014 0.99285 0.97208 0.98935 1.22729 0.91433 0.87600 0.96925 0.88949 1.87797 1.26787 1.34081 1.81343 1.22636 0.85412 1.00525 0.97335 0.92754 0.93425 0.93179 0.92041 0.92656 0.93064 0.91064 0.90523 0.93335 0.92347 0.92458 0.88681 0.92349 0.92740 0.91597 0.92540 0.92573 0.92079 0.95297 0.90753 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.84 16 3 C -0.14 -2.30 5.54 -26.73 -0.15 -2.45 16 4 C 0.13 2.57 5.09 -4.04 -0.02 2.55 16 5 N -0.63 -14.12 2.29 -167.75 -0.38 -14.51 16 6 C 0.56 15.27 7.03 -12.99 -0.09 15.18 16 7 O -0.58 -17.18 11.22 5.20 0.06 -17.12 16 8 C -0.54 -14.77 8.74 -35.63 -0.31 -15.08 16 9 H 0.07 1.80 6.00 -52.49 -0.31 1.48 16 10 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 11 N -0.77 -22.37 11.83 55.55 0.66 -21.71 16 12 Si 0.90 20.01 29.56 -169.99 -5.02 14.99 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 16 C 0.17 3.47 2.24 -67.93 -0.15 3.32 16 17 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 18 C -0.13 -2.52 5.13 -26.73 -0.14 -2.66 16 19 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 20 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 21 C -0.14 -2.18 5.54 -26.73 -0.15 -2.33 16 22 C 0.07 1.42 1.86 -26.73 -0.05 1.37 16 23 H 0.09 2.19 5.80 -51.93 -0.30 1.89 16 24 O -0.38 -7.64 10.21 -35.23 -0.36 -8.00 16 25 C 0.04 0.66 10.82 101.05 1.09 1.76 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.56 6.09 -51.93 -0.32 1.25 16 34 H 0.05 0.85 7.92 -51.93 -0.41 0.44 16 35 H 0.27 7.11 8.29 -40.82 -0.34 6.78 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.18 6.16 -51.93 -0.32 1.86 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.44 7.87 -51.93 -0.41 0.04 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -30.97 357.48 -8.19 -39.16 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.36 Total: 4.86 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.17 Total: -3.06 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.27 Total: -36.22 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.30 Total: -25.12 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.97 -8.19 -39.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408520408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.106 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds