Wall clock time and date at job start Tue Mar 31 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00601 * 2 1 4 4 H 1.48491 * 109.47504 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46914 * 300.00654 * 3 2 1 6 6 H 1.48496 * 109.47001 * 59.99952 * 3 2 1 7 7 C 1.37882 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00355 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99606 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46918 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47491 * 54.99886 * 11 10 9 13 13 N 1.46905 * 109.46952 * 294.99802 * 11 10 9 14 14 C 1.50702 * 109.46879 * 175.00211 * 11 10 9 15 15 O 1.21279 * 120.00201 * 99.99887 * 14 11 10 16 16 N 1.34779 * 119.99614 * 279.99353 * 14 11 10 17 17 C 1.46500 * 119.99793 * 180.02562 * 16 14 11 18 18 H 1.09002 * 109.47092 * 325.00176 * 17 16 14 19 19 C 1.53005 * 109.47094 * 84.99912 * 17 16 14 20 20 C 1.52999 * 109.47159 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 19 17 22 22 C 1.53000 * 109.47060 * 59.99960 * 21 20 19 23 23 C 1.52997 * 109.47007 * 205.00228 * 17 16 14 24 24 H 1.09002 * 109.46695 * 299.99637 * 23 17 16 25 25 C 1.52997 * 109.47232 * 59.99903 * 23 17 16 26 26 N 1.46897 * 109.47207 * 184.99960 * 25 23 17 27 27 H 0.96996 * 119.99632 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46920 * 59.99948 * 9 7 2 29 29 H 1.09002 * 109.46998 * 299.99970 * 9 7 2 30 30 H 1.09000 * 109.46832 * 59.99602 * 10 9 7 31 31 H 1.08997 * 109.46709 * 299.99987 * 10 9 7 32 32 H 1.00901 * 111.00289 * 176.04814 * 13 11 10 33 33 H 1.00903 * 110.99986 * 300.00529 * 13 11 10 34 34 H 0.97004 * 119.99983 * 0.02562 * 16 14 11 35 35 H 1.09000 * 109.47360 * 300.00194 * 19 17 16 36 36 H 1.09002 * 109.46935 * 60.00169 * 19 17 16 37 37 H 1.08996 * 109.46929 * 179.97438 * 20 19 17 38 38 H 1.09002 * 109.46716 * 60.00455 * 20 19 17 39 39 H 1.09002 * 109.47153 * 299.99641 * 21 20 19 40 40 H 1.09001 * 109.46832 * 179.97438 * 21 20 19 41 41 H 1.08992 * 109.47399 * 59.99823 * 22 21 20 42 42 H 1.09004 * 109.46724 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47223 * 304.99821 * 25 23 17 44 44 H 1.09001 * 109.46547 * 65.00156 * 25 23 17 45 45 H 1.00902 * 111.00240 * 56.04521 * 26 25 23 46 46 H 1.00900 * 111.00363 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7882 -5.0068 -0.8432 13 7 0.7280 -5.1188 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7862 -6.7537 0.8609 16 7 2.9580 -6.4586 -1.3313 17 6 3.9050 -7.5698 -1.4518 18 1 4.5395 -7.6041 -0.5661 19 6 3.1342 -8.8855 -1.5780 20 6 4.1232 -10.0460 -1.7044 21 6 4.9920 -9.8426 -2.9473 22 6 5.7628 -8.5270 -2.8209 23 6 4.7742 -7.3667 -2.6944 24 1 4.1396 -7.3326 -3.5799 25 6 5.5449 -6.0511 -2.5681 26 7 6.2864 -5.7969 -3.8105 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8905 32 1 0.1635 -5.9552 1.2511 33 1 1.3476 -5.1033 2.0501 34 1 2.6930 -5.9595 -2.1197 35 1 2.5149 -9.0302 -0.6927 36 1 2.4996 -8.8513 -2.4636 37 1 3.5740 -10.9832 -1.7938 38 1 4.7580 -10.0803 -0.8190 39 1 4.3571 -9.8082 -3.8327 40 1 5.6968 -10.6691 -3.0370 41 1 6.3976 -8.5613 -1.9356 42 1 6.3814 -8.3819 -3.7066 43 1 4.8445 -5.2353 -2.3897 44 1 6.2444 -6.1184 -1.7348 45 1 5.6672 -5.7943 -4.6072 46 1 6.8045 -4.9330 -3.7521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424074195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:41 Heat of formation + Delta-G solvation = -77.481042 kcal Electronic energy + Delta-G solvation = -23173.025518 eV Core-core repulsion = 19902.405661 eV Total energy + Delta-G solvation = -3270.619856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31948 -38.60716 -35.21858 -34.79791 -34.18371 -32.81032 -30.48647 -30.14660 -29.65010 -26.35914 -24.80189 -23.91277 -22.26512 -21.23569 -20.57895 -20.34982 -19.54844 -17.24399 -16.65749 -16.21716 -15.72418 -15.49125 -15.07767 -14.81728 -14.54175 -14.48119 -14.32890 -14.03939 -13.87036 -13.41106 -13.03603 -12.64384 -12.34041 -12.25927 -12.08760 -12.02470 -11.56999 -11.40595 -11.16186 -10.93571 -10.85842 -10.69648 -10.65806 -10.54364 -10.38967 -10.07846 -9.81925 -9.39277 -9.06663 -9.00278 -8.80964 -8.36134 -8.20769 -5.96214 -3.98436 2.79642 3.26378 3.31614 3.39445 3.42944 4.18571 4.44475 4.47744 4.57178 4.71972 4.85057 4.91152 5.04245 5.09129 5.13201 5.22451 5.26301 5.32695 5.39386 5.46564 5.52177 5.56759 5.68139 5.79937 5.83033 5.89955 5.91034 5.95778 5.98176 6.16242 6.23490 6.39931 6.53678 6.63802 6.88794 7.06461 7.20336 7.38385 7.61798 7.73951 7.79650 7.94008 8.10930 8.34628 8.46066 9.09816 9.64850 11.14697 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.003793 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.387682 B = 7380.773083 C = 8493.938584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.094 4.094 11 C 0.078 3.922 12 H 0.096 0.904 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.553 6.553 16 N -0.727 5.727 17 C 0.149 3.851 18 H 0.086 0.914 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.102 4.102 23 C -0.090 4.090 24 H 0.072 0.928 25 C 0.061 3.939 26 N -0.850 5.850 27 H 0.259 0.741 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.333 0.667 33 H 0.347 0.653 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.338 0.662 46 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -18.548 -8.114 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.038 4.038 12 H 0.114 0.886 13 N -0.335 5.335 14 C 0.270 3.730 15 O -0.431 6.431 16 N -0.378 5.378 17 C 0.043 3.957 18 H 0.104 0.896 19 C -0.165 4.165 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.109 4.109 24 H 0.091 0.909 25 C -0.069 4.069 26 N -0.379 5.379 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.781 -18.844 -7.405 22.069 hybrid contribution 0.250 1.159 -0.355 1.238 sum 9.031 -17.685 -7.761 21.320 Atomic orbital electron populations 1.69982 1.05945 1.26313 1.50879 1.24996 0.94805 0.99063 0.95483 0.86602 0.80084 0.84116 0.77564 1.19883 1.21104 1.21014 1.21309 0.92888 0.91324 1.50514 0.92998 1.19022 0.93569 0.89848 0.98194 1.21633 0.98794 0.92269 1.00495 1.21833 0.93567 0.93369 0.95051 0.88594 1.58998 1.26933 1.44266 1.03285 1.22718 0.82125 0.85568 0.82616 1.90639 1.60860 1.54421 1.37164 1.46268 1.46711 1.34633 1.10224 1.20946 0.90234 0.85932 0.98576 0.89636 1.21893 0.98264 0.94172 1.02200 1.21501 0.97768 0.97773 0.98464 1.21600 0.98676 0.97708 0.97987 1.21435 0.97138 0.92551 1.02876 1.21406 0.96545 0.95532 0.97417 0.90917 1.21850 0.96352 0.95927 0.92810 1.58741 1.31904 1.42442 1.04801 0.93139 0.96926 0.94653 0.92895 0.93077 0.85494 0.83849 0.76589 0.91522 0.91930 0.91955 0.91845 0.92084 0.91984 0.92083 0.90383 0.94618 0.91028 0.84981 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.66 9.11 -34.43 -0.31 -14.98 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 10 C -0.09 -1.86 4.78 -26.73 -0.13 -1.99 16 11 C 0.08 1.28 3.15 -68.86 -0.22 1.07 16 12 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 13 N -0.81 -13.60 8.44 -5.65 -0.05 -13.65 16 14 C 0.48 7.43 7.03 -10.98 -0.08 7.35 16 15 O -0.55 -10.01 15.91 5.56 0.09 -9.92 16 16 N -0.73 -8.73 4.30 -53.80 -0.23 -8.96 16 17 C 0.15 1.62 1.90 -67.93 -0.13 1.49 16 18 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 19 C -0.13 -1.28 5.50 -26.73 -0.15 -1.43 16 20 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.10 -0.86 5.09 -26.75 -0.14 -1.00 16 23 C -0.09 -0.80 1.90 -90.64 -0.17 -0.98 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 C 0.06 0.60 6.09 -3.83 -0.02 0.58 16 26 N -0.85 -7.19 9.08 -10.37 -0.09 -7.28 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.33 4.89 9.06 -39.29 -0.36 4.54 16 33 H 0.35 5.97 8.58 -39.29 -0.34 5.63 16 34 H 0.40 4.17 8.40 -40.82 -0.34 3.83 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 43 H 0.04 0.39 7.30 -51.93 -0.38 0.01 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.34 2.48 8.99 -39.29 -0.35 2.13 16 46 H 0.34 2.70 9.08 -39.29 -0.36 2.35 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -31.64 364.98 -9.32 -40.97 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -8.36 Total: 12.75 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.89 Total: -9.95 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.36 Total: -55.95 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.64 -9.32 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424074195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.516 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds