Wall clock time and date at job start Tue Mar 31 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00601 * 2 1 4 4 H 1.48491 * 109.47504 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46914 * 300.00654 * 3 2 1 6 6 H 1.48496 * 109.47001 * 59.99952 * 3 2 1 7 7 C 1.37882 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00355 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99606 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46918 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47491 * 54.99886 * 11 10 9 13 13 N 1.46905 * 109.46952 * 294.99802 * 11 10 9 14 14 C 1.50702 * 109.46879 * 175.00211 * 11 10 9 15 15 O 1.21279 * 120.00201 * 99.99887 * 14 11 10 16 16 N 1.34779 * 119.99614 * 279.99353 * 14 11 10 17 17 C 1.46500 * 119.99793 * 180.02562 * 16 14 11 18 18 H 1.09002 * 109.47092 * 325.00176 * 17 16 14 19 19 C 1.53005 * 109.47094 * 84.99912 * 17 16 14 20 20 C 1.52999 * 109.47159 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 19 17 22 22 C 1.53000 * 109.47060 * 59.99960 * 21 20 19 23 23 C 1.52997 * 109.47007 * 205.00228 * 17 16 14 24 24 H 1.09002 * 109.46695 * 299.99637 * 23 17 16 25 25 C 1.52997 * 109.47232 * 59.99903 * 23 17 16 26 26 N 1.46897 * 109.47207 * 184.99960 * 25 23 17 27 27 H 0.96996 * 119.99632 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46920 * 59.99948 * 9 7 2 29 29 H 1.09002 * 109.46998 * 299.99970 * 9 7 2 30 30 H 1.09000 * 109.46832 * 59.99602 * 10 9 7 31 31 H 1.08997 * 109.46709 * 299.99987 * 10 9 7 32 32 H 1.00901 * 111.00289 * 176.04814 * 13 11 10 33 33 H 1.00903 * 110.99986 * 300.00529 * 13 11 10 34 34 H 0.97004 * 119.99983 * 0.02562 * 16 14 11 35 35 H 1.09000 * 109.47360 * 300.00194 * 19 17 16 36 36 H 1.09002 * 109.46935 * 60.00169 * 19 17 16 37 37 H 1.08996 * 109.46929 * 179.97438 * 20 19 17 38 38 H 1.09002 * 109.46716 * 60.00455 * 20 19 17 39 39 H 1.09002 * 109.47153 * 299.99641 * 21 20 19 40 40 H 1.09001 * 109.46832 * 179.97438 * 21 20 19 41 41 H 1.08992 * 109.47399 * 59.99823 * 22 21 20 42 42 H 1.09004 * 109.46724 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47223 * 304.99821 * 25 23 17 44 44 H 1.09001 * 109.46547 * 65.00156 * 25 23 17 45 45 H 1.00902 * 111.00240 * 56.04521 * 26 25 23 46 46 H 1.00900 * 111.00363 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7882 -5.0068 -0.8432 13 7 0.7280 -5.1188 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7862 -6.7537 0.8609 16 7 2.9580 -6.4586 -1.3313 17 6 3.9050 -7.5698 -1.4518 18 1 4.5395 -7.6041 -0.5661 19 6 3.1342 -8.8855 -1.5780 20 6 4.1232 -10.0460 -1.7044 21 6 4.9920 -9.8426 -2.9473 22 6 5.7628 -8.5270 -2.8209 23 6 4.7742 -7.3667 -2.6944 24 1 4.1396 -7.3326 -3.5799 25 6 5.5449 -6.0511 -2.5681 26 7 6.2864 -5.7969 -3.8105 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8905 32 1 0.1635 -5.9552 1.2511 33 1 1.3476 -5.1033 2.0501 34 1 2.6930 -5.9595 -2.1197 35 1 2.5149 -9.0302 -0.6927 36 1 2.4996 -8.8513 -2.4636 37 1 3.5740 -10.9832 -1.7938 38 1 4.7580 -10.0803 -0.8190 39 1 4.3571 -9.8082 -3.8327 40 1 5.6968 -10.6691 -3.0370 41 1 6.3976 -8.5613 -1.9356 42 1 6.3814 -8.3819 -3.7066 43 1 4.8445 -5.2353 -2.3897 44 1 6.2444 -6.1184 -1.7348 45 1 5.6672 -5.7943 -4.6072 46 1 6.8045 -4.9330 -3.7521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424074195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:40 Heat of formation + Delta-G solvation = -101.569902 kcal Electronic energy + Delta-G solvation = -23174.070089 eV Core-core repulsion = 19902.405661 eV Total energy + Delta-G solvation = -3271.664428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41525 -39.61088 -36.79290 -35.53576 -35.23181 -34.81446 -31.94052 -31.21442 -30.60748 -28.04372 -25.78363 -25.32542 -23.40313 -22.14259 -21.99442 -21.39748 -20.64044 -18.68964 -18.03747 -17.72638 -16.91876 -16.65415 -16.40983 -15.97406 -15.70607 -15.44060 -15.35789 -15.09833 -14.89893 -14.70576 -14.30697 -13.85456 -13.81725 -13.50809 -13.40591 -13.02166 -12.83873 -12.81939 -12.52654 -12.28791 -12.17987 -11.90417 -11.80501 -11.69056 -11.46370 -11.43323 -11.24010 -11.16201 -10.96474 -10.50543 -10.07399 -9.61477 -9.56051 -8.15036 -6.25285 1.40212 1.41509 1.52193 1.54404 2.16987 2.43522 3.18089 3.40580 3.57028 3.68711 3.80883 3.84572 4.04433 4.09633 4.16349 4.27465 4.31028 4.37243 4.44935 4.49719 4.53774 4.67430 4.75616 4.79901 4.92147 4.95668 5.02030 5.10202 5.20951 5.23545 5.25182 5.28299 5.44278 5.48191 5.55942 5.58175 5.83290 5.97511 6.09336 6.19623 6.29209 6.45495 6.53566 6.59009 6.93547 7.16790 7.42935 8.96348 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.003793 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.387682 B = 7380.773083 C = 8493.938584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.079 4.079 11 C 0.085 3.915 12 H 0.109 0.891 13 N -0.819 5.819 14 C 0.490 3.510 15 O -0.582 6.582 16 N -0.711 5.711 17 C 0.150 3.850 18 H 0.060 0.940 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.098 4.098 23 C -0.079 4.079 24 H 0.088 0.912 25 C 0.064 3.936 26 N -0.848 5.848 27 H 0.262 0.738 28 H -0.006 1.006 29 H 0.005 0.995 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.346 0.654 33 H 0.344 0.656 34 H 0.411 0.589 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.347 0.653 46 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.751 -19.072 -9.805 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.118 4.118 11 C -0.031 4.031 12 H 0.127 0.873 13 N -0.348 5.348 14 C 0.275 3.725 15 O -0.462 6.462 16 N -0.362 5.362 17 C 0.045 3.955 18 H 0.078 0.922 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.136 4.136 23 C -0.099 4.099 24 H 0.106 0.894 25 C -0.067 4.067 26 N -0.378 5.378 27 H 0.071 0.929 28 H 0.013 0.987 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.247 0.753 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.160 0.840 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.874 -19.385 -9.141 23.597 hybrid contribution -0.094 1.303 0.164 1.317 sum 9.780 -18.082 -8.977 22.432 Atomic orbital electron populations 1.70108 1.07618 1.27449 1.51773 1.25898 0.95697 1.03012 0.94999 0.85492 0.79056 0.79308 0.77729 1.18828 1.20225 1.20728 1.21744 0.93294 0.92723 1.50286 0.92709 1.18830 0.93871 0.91345 0.95748 1.21358 0.97652 0.92182 1.00567 1.21636 0.93769 0.92192 0.95476 0.87321 1.58977 1.27243 1.45269 1.03304 1.22305 0.81867 0.85123 0.83167 1.90634 1.61788 1.55392 1.38354 1.46151 1.45866 1.34625 1.09549 1.21011 0.89954 0.85935 0.98596 0.92158 1.21842 0.98397 0.94150 1.01667 1.21493 0.97511 0.97545 0.98728 1.21571 0.98710 0.97480 0.97651 1.21398 0.96901 0.92743 1.02535 1.21335 0.96388 0.95441 0.96702 0.89398 1.21756 0.95891 0.95966 0.93065 1.58712 1.31841 1.42774 1.04458 0.92924 0.98717 0.97678 0.94139 0.91607 0.84082 0.84212 0.75318 0.93792 0.90637 0.90793 0.92783 0.91066 0.90846 0.93100 0.90004 0.95806 0.92549 0.83981 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.05 2.99 7.74 -2.92 -0.02 2.97 16 9 C 0.04 2.03 4.86 29.85 0.15 2.17 16 10 C -0.08 -3.16 4.78 30.59 0.15 -3.02 16 11 C 0.09 2.79 3.15 44.17 0.14 2.93 16 12 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 13 N -0.82 -27.87 8.44 -171.79 -1.45 -29.32 16 14 C 0.49 14.84 7.03 87.66 0.62 15.46 16 15 O -0.58 -21.16 15.91 -3.03 -0.05 -21.21 16 16 N -0.71 -16.33 4.30 -442.52 -1.91 -18.23 16 17 C 0.15 3.14 1.90 44.99 0.09 3.22 16 18 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 19 C -0.12 -2.31 5.50 30.60 0.17 -2.14 16 20 C -0.11 -1.78 5.92 30.59 0.18 -1.59 16 21 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 22 C -0.10 -1.46 5.09 30.58 0.16 -1.31 16 23 C -0.08 -1.28 1.90 -10.81 -0.02 -1.30 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 C 0.06 1.19 6.09 86.30 0.53 1.71 16 26 N -0.85 -12.81 9.08 -186.72 -1.69 -14.51 16 27 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.35 10.13 9.06 -89.69 -0.81 9.32 16 33 H 0.34 12.08 8.58 -89.69 -0.77 11.31 16 34 H 0.41 7.82 8.40 -92.71 -0.78 7.04 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.21 7.75 -2.39 -0.02 1.19 16 43 H 0.02 0.49 7.30 -2.39 -0.02 0.47 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.35 4.27 8.99 -89.69 -0.81 3.46 16 46 H 0.35 4.93 9.08 -89.69 -0.81 4.12 16 Total: -1.00 -68.20 364.98 -2.75 -70.95 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -2.98 Total: 37.24 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.02 Total: -15.02 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -4.76 Total: -118.22 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.20 -2.75 -70.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424074195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.623 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds