Wall clock time and date at job start Tue Mar 31 2020 03:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99915 * 2 1 4 4 C 1.52991 * 109.47344 * 293.95674 * 3 2 1 5 5 C 1.47200 * 109.47490 * 179.97438 * 4 3 2 6 6 N 4.80846 * 103.18755 * 343.64812 * 2 1 3 7 7 C 1.46896 * 111.00130 * 123.95842 * 2 1 3 8 8 C 1.53001 * 109.47166 * 164.00400 * 7 2 1 9 9 H 1.09004 * 109.47043 * 58.53500 * 8 7 2 10 10 O 1.42891 * 109.47249 * 298.53425 * 8 7 2 11 11 C 1.53000 * 109.47138 * 178.52715 * 8 7 2 12 12 N 1.46896 * 109.47383 * 184.99831 * 11 8 7 13 13 C 1.47953 * 111.00359 * 170.00389 * 12 11 8 14 14 C 1.53939 * 86.18419 * 222.42025 * 13 12 11 15 15 O 1.42903 * 113.73400 * 269.36105 * 14 13 12 16 16 C 1.50706 * 113.73503 * 138.07594 * 14 13 12 17 17 H 1.08001 * 119.99764 * 0.02562 * 16 14 13 18 18 C 1.37868 * 119.99671 * 180.02562 * 16 14 13 19 19 N 1.31509 * 120.00622 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99776 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47503 * 89.99846 * 20 18 16 22 22 H 1.48505 * 109.47174 * 209.99961 * 20 18 16 23 23 H 1.48502 * 109.47108 * 329.99898 * 20 18 16 24 24 C 1.47962 * 110.99616 * 70.64250 * 12 11 8 25 25 H 1.08996 * 109.46586 * 302.02131 * 1 2 3 26 26 H 1.08998 * 109.47168 * 62.02139 * 1 2 3 27 27 H 1.08997 * 109.46757 * 182.02289 * 1 2 3 28 28 H 1.09000 * 109.47071 * 53.95968 * 3 2 1 29 29 H 1.09006 * 109.47161 * 173.95455 * 3 2 1 30 30 H 1.08999 * 109.47449 * 299.99642 * 4 3 2 31 31 H 1.08997 * 109.47715 * 59.99679 * 4 3 2 32 32 H 1.08995 * 109.47281 * 44.00262 * 7 2 1 33 33 H 1.08999 * 109.46904 * 284.00024 * 7 2 1 34 34 H 0.96705 * 113.99906 * 299.99789 * 10 8 7 35 35 H 1.09004 * 109.46796 * 65.00204 * 11 8 7 36 36 H 1.08997 * 109.47595 * 305.00756 * 11 8 7 37 37 H 1.09005 * 113.76316 * 108.10193 * 13 12 11 38 38 H 1.09005 * 113.86068 * 336.75023 * 13 12 11 39 39 H 0.96696 * 113.99860 * 179.97438 * 15 14 13 40 40 H 0.96997 * 120.00577 * 179.97438 * 19 18 16 41 41 H 1.09000 * 113.76292 * 23.27165 * 24 12 11 42 42 H 1.09003 * 113.76287 * 251.89521 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3181 5 6 2.1584 3.4319 -1.3179 6 7 2.5660 4.4923 -1.3181 7 6 1.9955 -0.7660 1.1375 8 6 3.4728 -1.0841 0.8982 9 1 4.0284 -0.1551 0.7700 10 8 3.6033 -1.8835 -0.2790 11 6 4.0307 -1.8502 2.0994 12 7 5.4753 -2.0510 1.9242 13 6 6.0923 -2.5727 3.1636 14 6 7.2362 -1.5797 2.8898 15 8 8.2967 -2.1265 2.1033 16 6 7.7256 -0.8634 4.1221 17 1 7.2755 -1.0707 5.0817 18 6 8.7479 0.0565 4.0243 19 7 9.2957 0.3093 2.8558 20 14 9.3550 0.9439 5.5519 21 1 10.4524 0.1616 6.1756 22 1 9.8583 2.2894 5.1756 23 1 8.2371 1.0862 6.5189 24 6 6.2097 -0.7751 2.0720 25 1 -0.3632 0.5449 0.8713 26 1 -0.3633 0.4821 -0.9075 27 1 -0.3633 -1.0270 0.0363 28 1 1.5612 1.9273 0.8310 29 1 3.0798 1.3444 0.1082 30 1 2.0658 1.5017 -2.1491 31 1 0.5472 2.0845 -1.4265 32 1 1.4357 -1.6956 1.2398 33 1 1.8936 -0.1782 2.0497 34 1 3.1332 -2.7274 -0.2355 35 1 3.5357 -2.8184 2.1745 36 1 3.8511 -1.2788 3.0100 37 1 6.3933 -3.6184 3.0979 38 1 5.5240 -2.3499 4.0667 39 1 9.0172 -1.5058 1.9287 40 1 10.0146 0.9567 2.7869 41 1 5.6747 -0.0253 2.6548 42 1 6.6046 -0.3844 1.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424145575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:43 Heat of formation + Delta-G solvation = -28.480826 kcal Electronic energy + Delta-G solvation = -22686.043154 eV Core-core repulsion = 19281.715012 eV Total energy + Delta-G solvation = -3404.328142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.40238 -38.44692 -36.89720 -35.94914 -34.10420 -32.06549 -31.88340 -30.46579 -28.06615 -26.31993 -25.24804 -25.12870 -23.13110 -21.25800 -20.80617 -18.60015 -17.95119 -17.28824 -16.23908 -16.04421 -15.92493 -15.29251 -14.95384 -14.88052 -14.69806 -14.33537 -13.90460 -13.69091 -13.51365 -13.34717 -12.72514 -12.62474 -12.56394 -12.09551 -12.07489 -11.93236 -11.84444 -11.50842 -11.44111 -11.19091 -11.07932 -10.82644 -10.79028 -10.59087 -10.36660 -10.01928 -9.56984 -9.28439 -8.64282 -8.55442 -8.18955 -7.77367 -6.26249 -4.36989 2.54270 2.63175 3.18823 3.26506 3.28363 3.42452 4.01842 4.24578 4.57167 4.63085 4.68200 4.74782 4.93081 5.00253 5.07529 5.13384 5.19452 5.30465 5.34232 5.47418 5.52885 5.59684 5.61469 5.69236 5.87568 6.00060 6.07116 6.18534 6.32970 6.43835 6.68867 6.71627 6.76498 7.06068 7.18682 7.36327 7.39654 7.76148 7.94797 7.99828 8.07399 8.64873 9.33452 9.67971 10.79188 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.004185 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.684873 B = 6688.202880 C = 7766.459963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.054 3.946 4 C -0.022 4.022 5 C 0.207 3.793 6 N -0.436 5.436 7 C 0.023 3.977 8 C 0.120 3.880 9 H 0.096 0.904 10 O -0.533 6.533 11 C -0.013 4.013 12 N -0.464 5.464 13 C 0.005 3.995 14 C 0.245 3.755 15 O -0.572 6.572 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.014 4.014 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.365 0.635 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.389 0.611 40 H 0.271 0.729 41 H 0.055 0.945 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.025 -1.408 -4.523 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C -0.075 4.075 4 C -0.062 4.062 5 C -0.112 4.112 6 N -0.113 5.113 7 C -0.105 4.105 8 C 0.060 3.940 9 H 0.114 0.886 10 O -0.336 6.336 11 C -0.143 4.143 12 N -0.187 5.187 13 C -0.123 4.123 14 C 0.204 3.796 15 O -0.383 6.383 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.143 4.143 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.210 0.790 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.244 0.756 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.098 -0.322 -5.840 18.070 hybrid contribution -0.413 1.100 2.596 2.849 sum -17.511 0.778 -3.245 17.826 Atomic orbital electron populations 1.22507 0.87381 1.02272 1.00830 1.61823 1.07391 1.12423 1.43520 1.22082 1.02079 0.88451 0.94905 1.19247 1.02006 0.83688 1.01301 1.29148 0.93574 0.94954 0.93480 1.81254 1.08969 1.12849 1.08218 1.22912 0.97735 0.98393 0.91491 1.21810 0.92076 0.94759 0.85361 0.88610 1.86648 1.76082 1.33266 1.37649 1.23308 0.94307 0.99702 0.96957 1.68596 1.00221 1.17241 1.32608 1.24176 0.96479 1.00722 0.90959 1.19716 0.84150 0.87594 0.88158 1.86041 1.34105 1.44465 1.73723 1.21661 1.19099 1.22485 0.94542 0.91745 1.25048 0.95626 0.95883 0.96476 1.69343 1.25905 1.35140 1.23304 0.86442 0.79168 0.78873 0.82633 1.20271 1.20947 1.19803 1.24685 0.97319 0.91633 1.00631 0.95622 0.90947 0.91181 0.93954 0.89277 0.86147 0.87596 0.90184 0.93751 0.78975 0.91377 0.94212 0.90724 0.91992 0.75608 0.91834 0.92667 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.27 60.07 0.56 0.67 16 2 N -0.53 -4.66 4.61 -242.92 -1.12 -5.78 16 3 C 0.05 0.48 4.76 -3.83 -0.02 0.46 16 4 C -0.02 -0.15 5.62 -29.52 -0.17 -0.32 16 5 C 0.21 2.19 15.43 -20.76 -0.32 1.87 16 6 N -0.44 -6.14 18.54 42.15 0.78 -5.35 16 7 C 0.02 0.23 4.63 -3.83 -0.02 0.21 16 8 C 0.12 1.62 3.03 -26.73 -0.08 1.54 16 9 H 0.10 1.50 5.83 -51.93 -0.30 1.19 16 10 O -0.53 -7.68 13.18 -35.23 -0.46 -8.15 16 11 C -0.01 -0.20 4.45 -3.83 -0.02 -0.21 16 12 N -0.46 -9.42 6.21 -238.23 -1.48 -10.90 16 13 C 0.01 0.11 7.36 -2.77 -0.02 0.09 16 14 C 0.25 6.21 1.44 -90.83 -0.13 6.08 16 15 O -0.57 -15.65 13.49 -35.23 -0.48 -16.13 16 16 C -0.54 -14.36 8.62 -34.44 -0.30 -14.66 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.07 1.89 5.39 -17.83 -0.10 1.80 16 19 N -0.90 -24.20 11.08 55.43 0.61 -23.58 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 C -0.01 -0.31 6.42 -2.76 -0.02 -0.33 16 25 H 0.03 0.16 8.12 -51.93 -0.42 -0.26 16 26 H 0.07 0.35 6.57 -51.93 -0.34 0.01 16 27 H 0.07 0.41 7.95 -51.93 -0.41 0.00 16 28 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 29 H 0.09 0.97 6.38 -51.93 -0.33 0.64 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.11 0.47 6.60 -51.93 -0.34 0.13 16 32 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 33 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 34 H 0.36 3.97 9.05 45.56 0.41 4.38 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.24 7.75 -51.93 -0.40 0.84 16 39 H 0.39 10.83 6.43 45.56 0.29 11.13 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.23 7.73 -51.93 -0.40 0.83 16 42 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -31.33 347.23 -7.69 -39.02 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.13 Total: 13.05 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.63 Total: -2.80 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.20 Total: -45.61 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.94 Total: -24.28 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.33 -7.69 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.537 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds