Wall clock time and date at job start Tue Mar 31 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46600 * 305.00222 * 11 10 9 13 13 N 1.46901 * 109.47133 * 64.99917 * 11 10 9 14 14 C 1.50693 * 109.47471 * 185.00271 * 11 10 9 15 15 O 1.21278 * 120.00208 * 260.00017 * 14 11 10 16 16 N 1.34781 * 120.00261 * 79.99562 * 14 11 10 17 17 C 1.46501 * 120.00070 * 180.02562 * 16 14 11 18 18 H 1.08998 * 109.47327 * 325.00172 * 17 16 14 19 19 C 1.53003 * 109.46761 * 85.00558 * 17 16 14 20 20 N 1.46896 * 109.46866 * 304.99513 * 19 17 16 21 21 C 1.53002 * 109.46948 * 205.00252 * 17 16 14 22 22 C 1.54264 * 110.02914 * 177.17062 * 21 17 16 23 23 C 1.54898 * 104.19379 * 217.10404 * 22 21 17 24 24 C 1.54885 * 102.74554 * 37.94008 * 23 22 21 25 25 C 1.53868 * 110.03125 * 59.99945 * 21 17 16 26 26 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 28 28 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 29 29 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 30 30 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 31 31 H 1.00892 * 110.99802 * 60.00229 * 13 11 10 32 32 H 1.00896 * 111.00006 * 183.95787 * 13 11 10 33 33 H 0.97005 * 119.99641 * 0.02562 * 16 14 11 34 34 H 1.08995 * 109.47692 * 64.99904 * 19 17 16 35 35 H 1.09003 * 109.47012 * 185.00057 * 19 17 16 36 36 H 1.00904 * 110.99809 * 180.02562 * 20 19 17 37 37 H 1.00902 * 111.00812 * 303.95649 * 20 19 17 38 38 H 1.09000 * 110.01619 * 298.61234 * 21 17 16 39 39 H 1.08994 * 110.48815 * 335.77812 * 22 21 17 40 40 H 1.09002 * 110.48918 * 98.42835 * 22 21 17 41 41 H 1.08995 * 110.75214 * 279.62743 * 23 22 21 42 42 H 1.08995 * 110.75176 * 156.25580 * 23 22 21 43 43 H 1.09004 * 110.48510 * 203.37781 * 24 23 22 44 44 H 1.09005 * 110.59863 * 80.79464 * 24 23 22 45 45 H 1.09000 * 110.03465 * 238.56680 * 25 21 17 46 46 H 1.08997 * 110.03718 * 359.95407 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 1 5.9147 -2.0474 -0.8428 13 7 6.0411 -2.0514 1.2543 14 6 6.0537 -4.0522 -0.1247 15 8 6.4277 -4.6513 0.8612 16 7 6.0872 -4.6524 -1.3310 17 6 6.5750 -6.0285 -1.4512 18 1 7.3810 -6.1921 -0.7359 19 6 5.4307 -7.0022 -1.1620 20 7 4.8507 -6.6992 0.1532 21 6 7.0972 -6.2624 -2.8702 22 6 7.6792 -7.6859 -2.9912 23 6 8.9065 -7.5167 -3.9209 24 6 9.4912 -6.1550 -3.4706 25 6 8.2492 -5.2890 -3.1750 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 -0.8911 28 1 3.8751 -0.6805 0.8889 29 1 3.6583 -3.1503 0.8892 30 1 3.6577 -3.1507 -0.8908 31 1 5.7175 -2.5803 2.0502 32 1 7.0475 -1.9809 1.2519 33 1 5.7883 -4.1730 -2.1197 34 1 4.6638 -6.9001 -1.9296 35 1 5.8131 -8.0230 -1.1639 36 1 4.0925 -7.3294 0.3678 37 1 5.5562 -6.7240 0.8741 38 1 6.2916 -6.1250 -3.5916 39 1 7.9892 -8.0556 -2.0138 40 1 6.9498 -8.3594 -3.4411 41 1 8.5974 -7.4779 -4.9654 42 1 9.6267 -8.3187 -3.7595 43 1 10.0842 -5.7112 -4.2703 44 1 10.0951 -6.2755 -2.5711 45 1 8.0032 -4.6799 -4.0448 46 1 8.4358 -4.6494 -2.3123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424197782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:27 Heat of formation + Delta-G solvation = -66.418746 kcal Electronic energy + Delta-G solvation = -23256.102093 eV Core-core repulsion = 19985.961934 eV Total energy + Delta-G solvation = -3270.140159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13534 -38.54281 -35.72805 -34.92036 -33.12944 -32.65127 -30.42317 -30.19590 -28.99525 -26.80367 -25.77049 -23.61791 -21.81922 -20.96226 -20.27850 -20.09464 -19.51629 -17.09339 -16.71707 -16.46813 -16.13365 -15.75445 -15.29499 -14.93835 -14.55701 -14.19314 -14.04915 -13.66403 -13.53798 -13.38366 -13.14928 -12.75730 -12.50619 -12.27291 -11.81110 -11.55957 -11.43717 -11.39119 -11.34761 -11.13794 -10.94413 -10.91077 -10.76429 -10.67975 -10.18448 -9.79771 -9.67064 -9.45533 -9.01804 -8.91352 -8.50354 -8.42300 -8.22544 -5.93037 -3.89710 2.99875 3.38815 3.40504 3.48017 3.56989 4.17164 4.26658 4.36377 4.57448 4.68044 4.90462 4.94192 5.02260 5.12423 5.17549 5.23877 5.27374 5.30869 5.32573 5.42017 5.42613 5.50094 5.54924 5.55913 5.61247 5.78832 5.84473 5.86979 5.92431 6.00701 6.10766 6.46910 6.62524 6.66840 7.02350 7.23978 7.39581 7.48198 7.56073 7.68408 7.77615 7.79422 7.94909 8.55357 8.66372 9.13029 9.70520 11.20651 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.003598 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.977825 B = 7779.701793 C = 7963.668441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.080 4.080 11 C 0.075 3.925 12 H 0.091 0.909 13 N -0.812 5.812 14 C 0.501 3.499 15 O -0.550 6.550 16 N -0.717 5.717 17 C 0.154 3.846 18 H 0.081 0.919 19 C 0.051 3.949 20 N -0.839 5.839 21 C -0.100 4.100 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.261 0.739 27 H 0.006 0.994 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.349 0.651 32 H 0.332 0.668 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.335 0.665 37 H 0.349 0.651 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.146 -15.656 -7.620 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.555 4.555 8 H 0.087 0.913 9 C -0.043 4.043 10 C -0.119 4.119 11 C -0.041 4.041 12 H 0.109 0.891 13 N -0.340 5.340 14 C 0.287 3.713 15 O -0.427 6.427 16 N -0.368 5.368 17 C 0.048 3.952 18 H 0.099 0.901 19 C -0.081 4.081 20 N -0.370 5.370 21 C -0.119 4.119 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.158 4.158 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.660 -14.587 -7.394 24.813 hybrid contribution 0.854 -0.872 -0.130 1.227 sum 19.514 -15.459 -7.525 26.008 Atomic orbital electron populations 1.69934 1.06359 1.26695 1.51827 1.25022 0.94688 0.99185 0.94722 0.86773 0.80737 0.83496 0.78329 1.20588 1.21697 1.18404 1.21215 0.89872 0.94280 1.50172 0.91310 1.19501 0.96244 0.91612 0.96934 1.21371 0.88025 1.00823 1.01636 1.21802 0.99384 0.88322 0.94559 0.89124 1.59037 1.15044 1.56323 1.03601 1.22200 0.76264 0.90266 0.82576 1.90529 1.48714 1.66574 1.36925 1.45945 1.66606 1.14025 1.10174 1.21022 0.95544 0.82497 0.96107 0.90143 1.22210 0.97014 0.95773 0.93125 1.58582 1.15036 1.59711 1.03688 1.22047 0.98225 0.95712 0.95921 1.22389 0.97312 0.95715 0.99977 1.22496 0.97106 0.97262 0.99375 1.22361 0.97400 0.95553 1.00952 1.22197 0.94140 0.97696 1.01810 0.92947 0.97589 0.94929 0.92178 0.92363 0.83680 0.85662 0.76823 0.91206 0.95510 0.85302 0.83610 0.90265 0.91448 0.91425 0.91429 0.91661 0.91760 0.91782 0.91571 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.71 13.96 55.43 0.77 -27.94 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.13 3.93 -27.88 -0.11 -0.24 16 10 C -0.08 -1.61 4.78 -26.73 -0.13 -1.74 16 11 C 0.08 1.21 3.15 -68.86 -0.22 1.00 16 12 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 13 N -0.81 -13.10 8.44 -5.65 -0.05 -13.15 16 14 C 0.50 7.45 6.35 -10.99 -0.07 7.38 16 15 O -0.55 -9.24 13.69 5.56 0.08 -9.17 16 16 N -0.72 -8.51 4.38 -53.81 -0.24 -8.74 16 17 C 0.15 1.59 1.61 -67.93 -0.11 1.48 16 18 H 0.08 0.97 7.55 -51.93 -0.39 0.58 16 19 C 0.05 0.54 6.19 -3.82 -0.02 0.52 16 20 N -0.84 -10.64 8.04 -10.37 -0.08 -10.73 16 21 C -0.10 -0.79 2.56 -89.51 -0.23 -1.02 16 22 C -0.12 -0.81 5.41 -25.07 -0.14 -0.94 16 23 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 24 C -0.13 -0.89 6.83 -25.07 -0.17 -1.06 16 25 C -0.12 -0.96 6.19 -25.61 -0.16 -1.12 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 28 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.35 5.81 8.58 -39.30 -0.34 5.47 16 32 H 0.33 4.62 9.06 -39.29 -0.36 4.26 16 33 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.25 7.44 -51.93 -0.39 -0.14 16 36 H 0.33 3.78 9.08 -39.29 -0.36 3.43 16 37 H 0.35 4.72 7.50 -39.29 -0.29 4.42 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.49 7.74 -51.93 -0.40 0.09 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.64 7.37 -51.93 -0.38 0.26 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -32.76 358.93 -8.97 -41.73 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -8.24 Total: 15.22 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.95 Total: -10.32 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.41 Total: -60.55 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.76 -8.97 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424197782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.692 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds