Wall clock time and date at job start Tue Mar 31 2020 03:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48505 * 109.46966 * 269.99929 * 3 2 1 5 5 H 1.48493 * 109.47172 * 30.00037 * 3 2 1 6 6 H 1.48501 * 109.46982 * 149.99982 * 3 2 1 7 7 C 1.37877 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00346 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47347 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47004 * 54.99846 * 11 10 9 13 13 N 1.46902 * 109.46877 * 294.99867 * 11 10 9 14 14 C 1.50703 * 109.47204 * 175.00041 * 11 10 9 15 15 O 1.21279 * 120.00024 * 99.99591 * 14 11 10 16 16 N 1.34778 * 119.99935 * 279.99943 * 14 11 10 17 17 C 1.46499 * 119.99771 * 180.02562 * 16 14 11 18 18 H 1.09002 * 109.47391 * 34.99730 * 17 16 14 19 19 C 1.53002 * 109.46799 * 274.99826 * 17 16 14 20 20 N 1.46891 * 109.47278 * 55.00379 * 19 17 16 21 21 C 1.53000 * 109.46840 * 155.00060 * 17 16 14 22 22 C 1.54258 * 110.03749 * 57.16426 * 21 17 16 23 23 C 1.54888 * 104.20084 * 217.10608 * 22 21 17 24 24 C 1.54893 * 102.74529 * 37.93893 * 23 22 21 25 25 C 1.53881 * 110.03217 * 299.99466 * 21 17 16 26 26 H 0.96997 * 120.00558 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46949 * 59.99695 * 9 7 2 28 28 H 1.08995 * 109.46902 * 300.00147 * 9 7 2 29 29 H 1.08998 * 109.47400 * 59.99516 * 10 9 7 30 30 H 1.09002 * 109.47172 * 300.00254 * 10 9 7 31 31 H 1.00906 * 110.99844 * 176.04342 * 13 11 10 32 32 H 1.00893 * 110.99982 * 300.00213 * 13 11 10 33 33 H 0.96998 * 119.99599 * 359.97438 * 16 14 11 34 34 H 1.09002 * 109.46816 * 175.00414 * 19 17 16 35 35 H 1.09000 * 109.47059 * 295.00070 * 19 17 16 36 36 H 1.00896 * 111.00289 * 179.97438 * 20 19 17 37 37 H 1.00903 * 111.00196 * 303.95123 * 20 19 17 38 38 H 1.09002 * 110.01360 * 178.60987 * 21 17 16 39 39 H 1.09002 * 110.48428 * 335.78367 * 22 21 17 40 40 H 1.08999 * 110.48932 * 98.42370 * 22 21 17 41 41 H 1.08999 * 110.75301 * 279.62747 * 23 22 21 42 42 H 1.08999 * 110.91665 * 156.32922 * 23 22 21 43 43 H 1.09000 * 110.48444 * 203.37896 * 24 23 22 44 44 H 1.08997 * 110.59374 * 80.79546 * 24 23 22 45 45 H 1.08997 * 110.03263 * 238.57250 * 25 21 17 46 46 H 1.09003 * 110.02708 * 0.02562 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5516 -2.6364 0.0012 12 1 5.9142 -2.0473 0.8434 13 7 6.0422 -2.0506 -1.2535 14 6 6.0538 -4.0519 0.1249 15 8 6.4287 -4.6506 -0.8610 16 7 6.0864 -4.6524 1.3310 17 6 6.5752 -6.0282 1.4513 18 1 7.3822 -6.1909 0.7369 19 6 5.4322 -7.0027 1.1603 20 7 4.8534 -6.6997 -0.1554 21 6 7.0959 -6.2621 2.8709 22 6 5.9831 -5.9663 3.8974 23 6 6.7274 -5.3083 5.0857 24 6 7.7932 -4.4340 4.3794 25 6 8.2469 -5.2878 3.1774 26 1 -0.4851 0.8400 -0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6796 -0.8894 29 1 3.6586 -3.1501 -0.8902 30 1 3.6579 -3.1505 0.8896 31 1 7.0488 -1.9800 -1.2503 32 1 5.7193 -2.5792 -2.0499 33 1 5.7869 -4.1733 2.1195 34 1 5.8154 -8.0231 1.1624 35 1 4.6642 -6.9014 1.9271 36 1 4.0960 -7.3304 -0.3712 37 1 4.5492 -5.7389 -0.2040 38 1 7.4394 -7.2910 2.9774 39 1 5.2502 -5.2772 3.4777 40 1 5.5008 -6.8910 4.2143 41 1 7.2012 -6.0648 5.7113 42 1 6.0499 -4.6906 5.6753 43 1 8.6319 -4.2405 5.0481 44 1 7.3548 -3.4965 4.0376 45 1 9.1486 -5.8440 3.4335 46 1 8.4342 -4.6481 2.3149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424197783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:30 Heat of formation + Delta-G solvation = -61.212821 kcal Electronic energy + Delta-G solvation = -23668.435831 eV Core-core repulsion = 20398.521418 eV Total energy + Delta-G solvation = -3269.914413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44877 -38.57331 -35.69243 -34.99854 -32.99593 -32.72616 -30.54361 -30.31481 -29.01410 -26.88816 -25.84906 -23.69074 -22.01910 -21.05765 -20.34659 -19.85441 -19.53389 -17.32423 -16.70846 -16.46032 -16.15177 -15.73339 -15.44932 -15.14050 -14.49570 -14.15241 -14.03375 -13.85884 -13.58376 -13.41050 -13.13240 -12.72428 -12.56806 -12.32916 -12.13391 -11.70495 -11.36542 -11.32611 -11.17996 -10.98879 -10.91507 -10.89909 -10.86077 -10.74010 -10.25078 -10.00178 -9.71486 -9.55844 -9.12003 -9.06904 -8.50822 -8.48257 -8.34009 -6.00348 -3.97937 2.82410 3.27775 3.37090 3.43611 3.48931 4.16709 4.30561 4.39175 4.50671 4.69350 4.81199 4.98554 5.01822 5.05418 5.17776 5.20888 5.28393 5.34590 5.36521 5.38850 5.43191 5.45403 5.59352 5.60104 5.68552 5.70292 5.84612 5.85033 6.00128 6.05249 6.08680 6.27389 6.45794 6.56842 6.86481 7.19040 7.30151 7.38036 7.49951 7.55226 7.63350 7.69883 7.86017 8.39282 8.56849 9.04035 9.62888 11.13156 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.004338 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.411863 B = 6453.381565 C = 6854.122953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.068 0.932 9 C -0.004 4.004 10 C -0.086 4.086 11 C 0.073 3.927 12 H 0.094 0.906 13 N -0.811 5.811 14 C 0.476 3.524 15 O -0.525 6.525 16 N -0.728 5.728 17 C 0.151 3.849 18 H 0.091 0.909 19 C 0.051 3.949 20 N -0.838 5.838 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.120 4.120 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.334 0.666 32 H 0.350 0.650 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.335 0.665 37 H 0.344 0.656 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.319 -12.761 9.265 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.086 0.914 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.043 4.043 12 H 0.112 0.888 13 N -0.339 5.339 14 C 0.261 3.739 15 O -0.400 6.400 16 N -0.383 5.383 17 C 0.046 3.954 18 H 0.109 0.891 19 C -0.081 4.081 20 N -0.369 5.369 21 C -0.118 4.118 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.158 4.158 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.746 -12.581 8.436 22.580 hybrid contribution -0.229 0.269 0.859 0.929 sum 16.516 -12.311 9.295 22.600 Atomic orbital electron populations 1.69919 1.06367 1.26829 1.51486 1.25009 0.94681 0.99215 0.94564 0.86737 0.80227 0.83428 0.78613 1.20251 1.21741 1.18927 1.21173 0.89761 0.94281 1.50683 0.91386 1.19476 0.96302 0.91246 0.97143 1.21451 0.88274 1.01533 1.01222 1.21848 0.99153 0.88309 0.94959 0.88815 1.59031 1.15313 1.56140 1.03444 1.22555 0.77726 0.90630 0.83036 1.90732 1.46897 1.65904 1.36449 1.46333 1.66908 1.14787 1.10238 1.21011 0.96535 0.81635 0.96220 0.89096 1.22184 0.96546 0.98905 0.90487 1.58694 1.39470 1.09220 1.29561 1.22065 0.95815 1.00401 0.93562 1.22487 0.97419 1.00911 0.95378 1.22502 0.97683 0.98862 0.97249 1.22378 0.98621 0.98545 0.96811 1.22181 0.97421 0.97579 0.98574 0.92842 0.96997 0.95206 0.92238 0.92542 0.85390 0.83586 0.76557 0.90873 0.95458 0.85362 0.84043 0.89764 0.91206 0.91389 0.91591 0.91362 0.91775 0.91463 0.91854 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.31 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 9 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 10 C -0.09 -1.62 4.78 -26.73 -0.13 -1.75 16 11 C 0.07 1.12 3.15 -68.86 -0.22 0.90 16 12 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.81 -12.53 8.44 -5.65 -0.05 -12.58 16 14 C 0.48 6.78 5.38 -10.98 -0.06 6.72 16 15 O -0.52 -8.93 14.32 5.56 0.08 -8.85 16 16 N -0.73 -8.26 4.04 -53.80 -0.22 -8.48 16 17 C 0.15 1.59 1.99 -67.93 -0.13 1.46 16 18 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 19 C 0.05 0.55 6.41 -3.83 -0.02 0.53 16 20 N -0.84 -11.16 8.57 -10.37 -0.09 -11.25 16 21 C -0.10 -0.79 2.80 -89.50 -0.25 -1.04 16 22 C -0.12 -0.96 4.97 -25.08 -0.12 -1.08 16 23 C -0.13 -0.90 6.91 -24.74 -0.17 -1.07 16 24 C -0.13 -0.95 6.83 -25.07 -0.17 -1.12 16 25 C -0.12 -0.95 6.19 -25.61 -0.16 -1.11 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 28 H 0.03 0.72 7.18 -51.93 -0.37 0.34 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.33 4.50 9.06 -39.29 -0.36 4.14 16 32 H 0.35 5.57 8.58 -39.30 -0.34 5.24 16 33 H 0.40 4.11 6.84 -40.82 -0.28 3.83 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.28 7.13 -51.93 -0.37 -0.09 16 36 H 0.33 3.94 9.08 -39.29 -0.36 3.58 16 37 H 0.34 5.17 6.20 -39.29 -0.24 4.92 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.60 6.13 -51.93 -0.32 0.29 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.64 7.37 -51.93 -0.38 0.25 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -31.97 354.22 -8.83 -40.80 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -8.02 Total: 15.98 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.98 Total: -10.99 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.42 Total: -59.58 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.97 -8.83 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424197783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.415 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds