Wall clock time and date at job start Tue Mar 31 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48501 * 109.47515 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47340 * 300.00079 * 3 2 1 6 6 H 1.48506 * 109.47296 * 59.99794 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 H 1.09001 * 109.46948 * 35.00281 * 17 16 14 19 19 C 1.52997 * 109.47288 * 275.00460 * 17 16 14 20 20 N 1.46900 * 109.47411 * 54.99994 * 19 17 16 21 21 C 1.52999 * 109.47481 * 154.99940 * 17 16 14 22 22 C 1.54278 * 110.02712 * 57.17022 * 21 17 16 23 23 C 1.54887 * 104.19420 * 217.10505 * 22 21 17 24 24 C 1.54890 * 102.74850 * 37.94352 * 23 22 21 25 25 C 1.53867 * 110.03511 * 300.00725 * 21 17 16 26 26 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 28 28 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 29 29 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 30 30 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 31 31 H 1.00907 * 110.99710 * 296.04721 * 13 11 10 32 32 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 33 33 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 34 34 H 1.09010 * 109.47187 * 174.99641 * 19 17 16 35 35 H 1.09000 * 109.47173 * 294.99681 * 19 17 16 36 36 H 1.00898 * 111.00116 * 56.03871 * 20 19 17 37 37 H 1.00892 * 111.00553 * 180.02562 * 20 19 17 38 38 H 1.08999 * 110.02188 * 178.60824 * 21 17 16 39 39 H 1.08998 * 110.48578 * 335.78137 * 22 21 17 40 40 H 1.08995 * 110.48211 * 98.42943 * 22 21 17 41 41 H 1.09004 * 110.75560 * 279.62916 * 23 22 21 42 42 H 1.08998 * 110.91556 * 156.32795 * 23 22 21 43 43 H 1.09005 * 110.48575 * 203.37752 * 24 23 22 44 44 H 1.08996 * 110.59944 * 80.79376 * 24 23 22 45 45 H 1.09003 * 110.03587 * 238.56960 * 25 21 17 46 46 H 1.09008 * 110.03349 * 359.97438 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 1 4.5470 -7.5945 0.5630 19 6 3.1496 -8.8806 1.5797 20 7 2.2244 -9.0235 0.4477 21 6 4.7858 -7.3536 2.6903 22 6 3.8976 -7.2345 3.9461 23 6 4.6097 -6.1684 4.8152 24 6 5.1175 -5.1524 3.7620 25 6 5.5614 -6.0298 2.5733 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.0232 -4.4008 -1.3300 32 1 1.3476 -5.1034 -2.0499 33 1 2.6973 -5.9560 2.1190 34 1 3.8553 -9.7115 1.5793 35 1 2.5857 -8.8834 2.5125 36 1 2.7157 -8.9592 -0.4312 37 1 1.7067 -9.8872 0.5106 38 1 5.4814 -8.1853 2.8016 39 1 2.8966 -6.8990 3.6749 40 1 3.8521 -8.1876 4.4728 41 1 5.4443 -6.6091 5.3606 42 1 3.9084 -5.6946 5.5021 43 1 5.9622 -4.5861 4.1545 44 1 4.3151 -4.4792 3.4606 45 1 6.6334 -6.2190 2.6286 46 1 5.3173 -5.5359 1.6327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424197786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:35 Heat of formation + Delta-G solvation = -67.214181 kcal Electronic energy + Delta-G solvation = -23624.751779 eV Core-core repulsion = 20354.577127 eV Total energy + Delta-G solvation = -3270.174652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10626 -38.28142 -35.65759 -34.86915 -32.94181 -32.74343 -30.16226 -29.78091 -28.87325 -26.58734 -25.65537 -23.84211 -22.04645 -21.02482 -20.39585 -19.60137 -19.36965 -17.33128 -16.39112 -16.20670 -15.80807 -15.63661 -14.88739 -14.47313 -14.35719 -14.25187 -14.08986 -13.63656 -13.52066 -13.36537 -13.00816 -12.73862 -12.61309 -12.07175 -11.97663 -11.57244 -11.19468 -11.16701 -11.04573 -10.99002 -10.87845 -10.79417 -10.73316 -10.62630 -10.55994 -9.92939 -9.78010 -9.20681 -9.06087 -8.75829 -8.43775 -8.41044 -8.01988 -6.05574 -4.08320 3.25294 3.27612 3.35624 3.39398 3.50261 4.27870 4.41736 4.43634 4.51523 4.80953 5.03320 5.12126 5.23708 5.26898 5.30383 5.32430 5.35818 5.36950 5.48153 5.50790 5.57266 5.65361 5.73240 5.75206 5.83742 5.89294 5.94603 6.03337 6.10992 6.23003 6.25351 6.38662 6.60729 6.79745 6.95185 7.26973 7.55413 7.58654 7.62385 7.68577 7.92254 7.96568 8.03878 8.35496 8.79728 8.98114 9.56411 11.05398 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.004575 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.104837 B = 6118.387949 C = 7381.087611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.091 0.909 13 N -0.827 5.827 14 C 0.542 3.458 15 O -0.537 6.537 16 N -0.718 5.718 17 C 0.155 3.845 18 H 0.081 0.919 19 C 0.051 3.949 20 N -0.838 5.838 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.121 4.121 26 H 0.260 0.740 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.351 0.649 32 H 0.343 0.657 33 H 0.396 0.604 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.352 0.648 37 H 0.331 0.669 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 -16.574 8.171 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.176 4.176 11 C -0.039 4.039 12 H 0.109 0.891 13 N -0.358 5.358 14 C 0.329 3.671 15 O -0.413 6.413 16 N -0.371 5.371 17 C 0.049 3.951 18 H 0.099 0.901 19 C -0.081 4.081 20 N -0.370 5.370 21 C -0.118 4.118 22 C -0.160 4.160 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.231 0.769 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.139 -16.962 7.984 20.438 hybrid contribution 1.262 1.291 0.039 1.806 sum 9.401 -15.671 8.024 19.958 Atomic orbital electron populations 1.69964 1.06005 1.26585 1.50673 1.25006 0.94840 0.99241 0.95215 0.86557 0.80121 0.83820 0.77634 1.19781 1.20975 1.20972 1.21227 0.93016 0.90937 1.50773 0.92736 1.19100 0.93761 0.91171 0.97292 1.22364 0.99780 0.94301 1.01196 1.21425 0.94741 0.92408 0.95322 0.89115 1.58714 1.18335 1.55653 1.03148 1.20508 0.80485 0.83670 0.82454 1.90506 1.60121 1.53332 1.37334 1.45847 1.46659 1.34596 1.10025 1.20882 0.90030 0.86185 0.97984 0.90074 1.22222 0.94584 0.95790 0.95514 1.58591 1.30884 1.42086 1.05411 1.22049 0.96823 0.98812 0.94090 1.22478 0.99074 0.99190 0.95297 1.22500 0.99811 0.96462 0.97494 1.22384 1.01147 0.97641 0.95258 1.22187 0.99264 0.94862 0.99557 0.92986 0.96452 0.96414 0.92781 0.92903 0.83461 0.84387 0.76851 0.95798 0.91133 0.83291 0.85690 0.90070 0.91053 0.91622 0.91758 0.91458 0.91774 0.91025 0.92007 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.74 -27.89 -0.13 0.45 16 10 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 11 C 0.08 1.34 3.21 -68.86 -0.22 1.12 16 12 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 13 N -0.83 -14.78 8.94 -5.65 -0.05 -14.83 16 14 C 0.54 8.94 6.36 -10.98 -0.07 8.87 16 15 O -0.54 -9.99 13.69 5.55 0.08 -9.92 16 16 N -0.72 -9.32 4.19 -53.81 -0.23 -9.55 16 17 C 0.16 1.73 1.92 -67.93 -0.13 1.59 16 18 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 19 C 0.05 0.53 6.36 -3.83 -0.02 0.51 16 20 N -0.84 -10.27 8.04 -10.37 -0.08 -10.35 16 21 C -0.10 -0.88 2.80 -89.50 -0.25 -1.13 16 22 C -0.12 -1.02 4.97 -25.07 -0.12 -1.14 16 23 C -0.13 -1.04 6.91 -24.74 -0.17 -1.21 16 24 C -0.13 -1.23 6.83 -25.07 -0.17 -1.40 16 25 C -0.12 -1.20 6.19 -25.62 -0.16 -1.35 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.35 6.33 7.55 -39.29 -0.30 6.04 16 32 H 0.34 6.19 8.58 -39.29 -0.34 5.85 16 33 H 0.40 4.80 6.84 -40.82 -0.28 4.52 16 34 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 35 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16 36 H 0.35 4.79 7.49 -39.29 -0.29 4.49 16 37 H 0.33 3.42 9.08 -39.30 -0.36 3.07 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.65 6.13 -51.93 -0.32 0.33 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.86 7.38 -51.92 -0.38 0.47 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -30.43 356.99 -9.18 -39.61 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -8.00 Total: 18.50 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.99 Total: -9.71 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.38 Total: -60.22 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.43 -9.18 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424197786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.605 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds