Wall clock time and date at job start Tue Mar 31 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48501 * 109.47515 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47340 * 300.00079 * 3 2 1 6 6 H 1.48506 * 109.47296 * 59.99794 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 H 1.09001 * 109.46948 * 35.00281 * 17 16 14 19 19 C 1.52997 * 109.47288 * 275.00460 * 17 16 14 20 20 N 1.46900 * 109.47411 * 54.99994 * 19 17 16 21 21 C 1.52999 * 109.47481 * 154.99940 * 17 16 14 22 22 C 1.54278 * 110.02712 * 57.17022 * 21 17 16 23 23 C 1.54887 * 104.19420 * 217.10505 * 22 21 17 24 24 C 1.54890 * 102.74850 * 37.94352 * 23 22 21 25 25 C 1.53867 * 110.03511 * 300.00725 * 21 17 16 26 26 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 28 28 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 29 29 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 30 30 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 31 31 H 1.00907 * 110.99710 * 296.04721 * 13 11 10 32 32 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 33 33 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 34 34 H 1.09010 * 109.47187 * 174.99641 * 19 17 16 35 35 H 1.09000 * 109.47173 * 294.99681 * 19 17 16 36 36 H 1.00898 * 111.00116 * 56.03871 * 20 19 17 37 37 H 1.00892 * 111.00553 * 180.02562 * 20 19 17 38 38 H 1.08999 * 110.02188 * 178.60824 * 21 17 16 39 39 H 1.08998 * 110.48578 * 335.78137 * 22 21 17 40 40 H 1.08995 * 110.48211 * 98.42943 * 22 21 17 41 41 H 1.09004 * 110.75560 * 279.62916 * 23 22 21 42 42 H 1.08998 * 110.91556 * 156.32795 * 23 22 21 43 43 H 1.09005 * 110.48575 * 203.37752 * 24 23 22 44 44 H 1.08996 * 110.59944 * 80.79376 * 24 23 22 45 45 H 1.09003 * 110.03587 * 238.56960 * 25 21 17 46 46 H 1.09008 * 110.03349 * 359.97438 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 1 4.5470 -7.5945 0.5630 19 6 3.1496 -8.8806 1.5797 20 7 2.2244 -9.0235 0.4477 21 6 4.7858 -7.3536 2.6903 22 6 3.8976 -7.2345 3.9461 23 6 4.6097 -6.1684 4.8152 24 6 5.1175 -5.1524 3.7620 25 6 5.5614 -6.0298 2.5733 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.0232 -4.4008 -1.3300 32 1 1.3476 -5.1034 -2.0499 33 1 2.6973 -5.9560 2.1190 34 1 3.8553 -9.7115 1.5793 35 1 2.5857 -8.8834 2.5125 36 1 2.7157 -8.9592 -0.4312 37 1 1.7067 -9.8872 0.5106 38 1 5.4814 -8.1853 2.8016 39 1 2.8966 -6.8990 3.6749 40 1 3.8521 -8.1876 4.4728 41 1 5.4443 -6.6091 5.3606 42 1 3.9084 -5.6946 5.5021 43 1 5.9622 -4.5861 4.1545 44 1 4.3151 -4.4792 3.4606 45 1 6.6334 -6.2190 2.6286 46 1 5.3173 -5.5359 1.6327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424197786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:35 Heat of formation + Delta-G solvation = -89.460397 kcal Electronic energy + Delta-G solvation = -23625.716447 eV Core-core repulsion = 20354.577127 eV Total energy + Delta-G solvation = -3271.139320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19770 -39.34184 -37.05895 -36.03099 -34.79291 -33.95608 -31.64462 -31.06024 -29.59529 -28.14370 -26.70822 -25.53075 -23.04786 -22.37349 -21.54149 -20.80369 -20.23940 -18.86591 -18.10823 -17.33930 -16.85806 -16.53336 -16.40197 -16.01974 -15.70038 -15.39603 -15.10668 -14.96736 -14.83584 -14.42323 -14.20572 -13.96413 -13.79308 -13.69547 -13.37007 -12.93611 -12.78866 -12.61393 -12.48179 -11.95162 -11.85080 -11.80110 -11.79026 -11.66897 -11.53252 -11.47000 -11.35637 -11.27370 -10.56647 -10.51869 -9.86849 -9.52586 -9.36508 -8.20854 -6.31277 1.38433 1.39885 1.51857 1.92410 2.33648 2.41287 3.12713 3.47097 3.67797 3.78036 3.83756 3.96681 4.03578 4.17936 4.22653 4.32471 4.33410 4.46370 4.60275 4.64351 4.67836 4.71280 4.77088 4.84195 4.87572 4.88077 5.03556 5.10853 5.12123 5.12558 5.30769 5.36536 5.45083 5.47333 5.53538 5.66675 5.74150 5.81584 6.16005 6.22403 6.38755 6.54298 6.67360 6.76399 6.84384 7.37862 7.52860 8.90235 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.004575 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.104837 B = 6118.387949 C = 7381.087611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.031 3.969 10 C -0.118 4.118 11 C 0.081 3.919 12 H 0.095 0.905 13 N -0.825 5.825 14 C 0.542 3.458 15 O -0.559 6.559 16 N -0.704 5.704 17 C 0.155 3.845 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.854 5.854 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.121 4.121 26 H 0.264 0.736 27 H 0.001 0.999 28 H -0.001 1.001 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.348 0.652 32 H 0.342 0.658 33 H 0.402 0.598 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.343 0.657 37 H 0.341 0.659 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.897 -17.361 9.584 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.158 4.158 11 C -0.034 4.034 12 H 0.113 0.887 13 N -0.356 5.356 14 C 0.328 3.672 15 O -0.437 6.437 16 N -0.357 5.357 17 C 0.050 3.950 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.386 5.386 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.168 4.168 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.017 0.983 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.238 0.762 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.428 -17.771 9.435 22.220 hybrid contribution 0.861 1.523 -0.389 1.792 sum 10.289 -16.248 9.046 21.253 Atomic orbital electron populations 1.70075 1.07522 1.27670 1.51467 1.25859 0.95702 1.02944 0.94738 0.85497 0.79023 0.79290 0.77830 1.18990 1.20525 1.20208 1.21634 0.93276 0.92442 1.50699 0.92807 1.18958 0.94030 0.92150 0.95512 1.22100 0.98642 0.94055 1.00976 1.21363 0.94865 0.91818 0.95384 0.88678 1.58731 1.18233 1.55333 1.03275 1.20214 0.80403 0.83311 0.83228 1.90502 1.60909 1.54038 1.38255 1.45752 1.46077 1.34799 1.09030 1.21026 0.89680 0.85918 0.98399 0.91966 1.22232 0.94757 0.95653 0.95129 1.58604 1.31551 1.42969 1.05477 1.22024 0.96709 0.98930 0.93187 1.22469 0.98267 1.00072 0.94927 1.22481 1.00255 0.95934 0.97068 1.22390 1.00710 0.97851 0.95821 1.22172 1.00153 0.95245 0.98290 0.92745 0.98068 0.98263 0.92049 0.93922 0.83801 0.84496 0.76194 0.93783 0.90267 0.84327 0.84628 0.87953 0.91988 0.89774 0.90400 0.91321 0.91492 0.92878 0.90913 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.54 4.74 29.84 0.14 1.69 16 10 C -0.12 -4.76 4.78 30.59 0.15 -4.62 16 11 C 0.08 2.87 3.21 44.17 0.14 3.01 16 12 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 13 N -0.83 -29.86 8.94 -171.79 -1.54 -31.40 16 14 C 0.54 17.78 6.36 87.66 0.56 18.34 16 15 O -0.56 -20.81 13.69 -3.04 -0.04 -20.85 16 16 N -0.70 -17.80 4.19 -442.54 -1.85 -19.65 16 17 C 0.15 3.23 1.92 44.99 0.09 3.32 16 18 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 19 C 0.05 1.01 6.36 86.30 0.55 1.56 16 20 N -0.85 -19.94 8.04 -186.71 -1.50 -21.44 16 21 C -0.09 -1.38 2.80 -10.07 -0.03 -1.41 16 22 C -0.12 -1.66 4.97 31.67 0.16 -1.50 16 23 C -0.12 -1.71 6.91 31.88 0.22 -1.49 16 24 C -0.13 -2.37 6.83 31.67 0.22 -2.15 16 25 C -0.12 -2.23 6.19 31.32 0.19 -2.04 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.00 0.05 6.87 -2.39 -0.02 0.04 16 28 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.35 12.86 7.55 -89.69 -0.68 12.19 16 32 H 0.34 12.54 8.58 -89.70 -0.77 11.77 16 33 H 0.40 9.40 6.84 -92.71 -0.63 8.76 16 34 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.08 1.36 7.13 -2.39 -0.02 1.35 16 36 H 0.34 9.14 7.49 -89.70 -0.67 8.47 16 37 H 0.34 6.59 9.08 -89.70 -0.81 5.78 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 0.99 6.13 -2.39 -0.01 0.97 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.05 1.08 7.38 -2.38 -0.02 1.07 16 Total: -1.00 -64.86 356.99 -2.10 -66.96 By element: Atomic # 1 Polarization: 52.39 SS G_CDS: -2.56 Total: 49.83 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.08 Total: -14.52 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -4.60 Total: -127.23 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.04 Total: -20.85 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -64.86 -2.10 -66.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424197786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.504 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds