Wall clock time and date at job start Tue Mar 31 2020 03:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99972 * 2 1 4 4 C 1.34776 * 120.00187 * 180.02562 * 2 1 3 5 5 O 1.21278 * 119.99909 * 359.97438 * 4 2 1 6 6 C 1.50703 * 119.99879 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.46807 * 179.97438 * 6 4 2 8 8 N 1.46505 * 109.47199 * 179.97438 * 7 6 4 9 9 C 1.34770 * 119.99997 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00460 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99942 * 180.27587 * 11 9 8 13 13 C 1.53005 * 109.46942 * 178.21726 * 12 11 9 14 14 C 1.50697 * 115.54927 * 65.12975 * 13 12 11 15 15 H 1.08000 * 119.99825 * 265.41127 * 14 13 12 16 16 C 1.37870 * 120.00191 * 85.40713 * 14 13 12 17 17 N 1.31511 * 120.00139 * 353.55966 * 16 14 13 18 18 Si 1.86796 * 120.00125 * 173.55888 * 16 14 13 19 19 H 1.48501 * 109.46996 * 90.00080 * 18 16 14 20 20 H 1.48505 * 109.47390 * 209.99972 * 18 16 14 21 21 H 1.48503 * 109.47242 * 330.00261 * 18 16 14 22 22 C 1.53005 * 117.49892 * 279.45811 * 13 12 11 23 23 C 1.52995 * 117.49601 * 210.80112 * 13 12 11 24 24 H 1.09011 * 109.46805 * 270.00211 * 1 2 3 25 25 H 1.08999 * 109.47140 * 29.99653 * 1 2 3 26 26 H 1.08995 * 109.47147 * 149.99970 * 1 2 3 27 27 H 1.09003 * 109.47563 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47275 * 300.00514 * 3 2 1 29 29 H 1.09000 * 109.47478 * 60.00375 * 3 2 1 30 30 H 1.08999 * 109.47426 * 60.00031 * 6 4 2 31 31 H 1.08994 * 109.46722 * 299.99327 * 6 4 2 32 32 H 1.09009 * 109.47181 * 60.00113 * 7 6 4 33 33 H 1.08997 * 109.47575 * 299.99968 * 7 6 4 34 34 H 0.96999 * 119.99285 * 0.02562 * 8 7 6 35 35 H 0.96998 * 119.99939 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.47336 * 298.21717 * 12 11 9 37 37 H 1.09001 * 109.46683 * 58.22047 * 12 11 9 38 38 H 0.97003 * 120.00760 * 185.06462 * 17 16 14 39 39 H 1.09006 * 117.49485 * 359.97438 * 22 13 12 40 40 H 1.08992 * 117.49885 * 145.01646 * 22 13 12 41 41 H 1.09009 * 117.49505 * 214.98214 * 23 13 12 42 42 H 1.08997 * 117.50195 * 359.97126 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1559 -2.6096 -0.0010 8 7 5.6210 -2.6096 -0.0022 9 6 6.2948 -3.7767 -0.0018 10 8 5.6869 -4.8297 -0.0009 11 7 7.6426 -3.7767 -0.0023 12 6 8.3751 -5.0455 -0.0080 13 6 9.8788 -4.7660 -0.0523 14 6 10.4467 -4.0712 1.1583 15 1 10.5527 -2.9964 1.1638 16 6 10.8307 -4.8074 2.2589 17 7 10.5859 -6.0988 2.3042 18 14 11.6989 -3.9709 3.6857 19 1 10.6915 -3.4934 4.6667 20 1 12.6123 -4.9383 4.3452 21 1 12.4830 -2.8158 3.1794 22 6 10.4956 -4.4329 -1.4123 23 6 10.7671 -5.7909 -0.7602 24 1 -0.3633 0.0000 1.0278 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 3.2691 1.0696 -0.0005 28 1 1.9341 1.8404 -0.8900 29 1 1.9342 1.8403 0.8900 30 1 4.0096 -0.6535 0.8888 31 1 4.0088 -0.6532 -0.8912 32 1 3.7922 -3.1236 -0.8908 33 1 3.7930 -3.1233 0.8892 34 1 6.1059 -1.7695 -0.0025 35 1 8.1276 -2.9367 -0.0027 36 1 8.1364 -5.6069 0.8953 37 1 8.0876 -5.6270 -0.8839 38 1 10.7891 -6.6032 3.1075 39 1 9.8302 -4.4133 -2.2755 40 1 11.3124 -3.7114 -1.4313 41 1 11.7626 -5.9624 -0.3505 42 1 10.2805 -6.6645 -1.1940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430186667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:30 Heat of formation + Delta-G solvation = -40.784487 kcal Electronic energy + Delta-G solvation = -21911.003766 eV Core-core repulsion = 18506.142097 eV Total energy + Delta-G solvation = -3404.861669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23215 -39.24760 -36.78619 -35.90401 -34.88241 -33.20163 -31.95910 -31.08235 -28.36004 -26.76008 -25.96310 -25.04770 -23.02390 -21.18505 -20.39837 -19.48168 -19.31498 -17.70141 -17.36421 -16.49681 -16.26715 -16.09361 -15.30839 -15.24533 -14.67204 -14.27121 -14.01815 -13.83366 -13.51926 -13.21356 -13.07011 -12.95166 -12.87758 -12.61760 -12.53692 -11.92583 -11.74981 -11.57576 -11.40103 -10.99349 -10.91243 -10.51877 -10.24914 -10.15163 -9.69890 -9.48652 -9.09273 -8.94683 -8.79885 -8.47820 -8.23146 -7.92999 -6.05908 -4.14684 2.33494 2.56758 3.26088 3.28637 3.34143 3.35331 3.86107 4.26145 4.36201 4.53901 4.70992 4.82978 4.88724 4.89646 4.99275 5.14204 5.21269 5.22219 5.27356 5.39211 5.47033 5.88457 5.98690 6.05637 6.10572 6.37124 6.50298 6.63407 6.71735 6.77582 6.88719 6.93923 7.11529 7.37156 7.43893 7.50592 7.63098 7.82740 7.85104 8.36076 8.70556 8.85929 9.26014 9.51876 11.01937 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.003041 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.065986 B = 9204.054386 C = 9708.523918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.627 5.627 3 C 0.074 3.926 4 C 0.517 3.483 5 O -0.530 6.530 6 C -0.152 4.152 7 C 0.157 3.843 8 N -0.757 5.757 9 C 0.698 3.302 10 O -0.600 6.600 11 N -0.720 5.720 12 C 0.182 3.818 13 C 0.028 3.972 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.392 0.608 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 16.776 -5.112 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.362 5.362 3 C -0.069 4.069 4 C 0.305 3.695 5 O -0.405 6.405 6 C -0.192 4.192 7 C 0.031 3.969 8 N -0.414 5.414 9 C 0.397 3.603 10 O -0.478 6.478 11 N -0.373 5.373 12 C 0.058 3.942 13 C 0.028 3.972 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.604 14.998 -5.012 21.525 hybrid contribution 0.924 1.374 0.916 1.892 sum -13.680 16.371 -4.096 21.724 Atomic orbital electron populations 1.21620 0.79072 1.03143 1.01951 1.47764 1.07250 1.06463 1.74708 1.21892 0.97700 0.85222 1.02117 1.20527 0.89964 0.83201 0.75812 1.90757 1.70325 1.30823 1.48620 1.21860 0.92390 1.00025 1.04967 1.20727 0.78837 0.93609 1.03693 1.45041 1.06404 1.07559 1.82417 1.16005 0.82381 0.83633 0.78240 1.90893 1.68195 1.30285 1.58470 1.45128 1.03295 1.11126 1.77724 1.20852 0.90753 0.82568 1.00021 1.19040 0.88958 0.99065 0.90177 1.20321 1.42216 0.92735 0.98544 0.92265 1.24987 0.95147 0.94675 0.98251 1.69972 1.46664 1.06503 1.27803 0.86635 0.79785 0.79318 0.82509 1.20700 1.21180 1.19866 1.23018 1.03967 1.00337 0.97477 1.22492 1.01681 0.90799 1.03639 0.92709 0.91278 0.90400 0.89887 0.91876 0.91865 0.88048 0.88120 0.91096 0.91025 0.77489 0.77159 0.91200 0.94727 0.92828 0.91646 0.90427 0.89834 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.48 59.84 0.63 1.21 16 2 N -0.63 -4.98 3.27 -189.51 -0.62 -5.60 16 3 C 0.07 0.31 10.60 59.85 0.63 0.94 16 4 C 0.52 5.65 7.67 -10.98 -0.08 5.57 16 5 O -0.53 -8.16 15.56 5.56 0.09 -8.08 16 6 C -0.15 -1.32 4.12 -27.88 -0.12 -1.43 16 7 C 0.16 2.12 4.96 -4.04 -0.02 2.10 16 8 N -0.76 -10.75 5.56 -65.22 -0.36 -11.11 16 9 C 0.70 13.79 8.57 -86.92 -0.74 13.05 16 10 O -0.60 -14.58 16.34 5.29 0.09 -14.49 16 11 N -0.72 -14.25 5.48 -65.22 -0.36 -14.61 16 12 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 13 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 14 C -0.50 -12.85 8.63 -34.44 -0.30 -13.14 16 15 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 16 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 17 N -0.87 -24.45 12.91 55.43 0.72 -23.73 16 18 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 23 C -0.15 -3.40 9.42 -26.70 -0.25 -3.65 16 24 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 26 H 0.08 0.67 7.42 -51.93 -0.39 0.28 16 27 H 0.08 0.26 5.77 -51.93 -0.30 -0.04 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.67 7.79 -51.93 -0.40 0.27 16 31 H 0.10 0.63 7.79 -51.93 -0.40 0.22 16 32 H 0.07 1.09 8.10 -51.92 -0.42 0.67 16 33 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.39 4.13 8.49 -40.82 -0.35 3.78 16 35 H 0.40 6.93 8.38 -40.82 -0.34 6.59 16 36 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 37 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.08 2.03 8.14 -51.92 -0.42 1.61 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -34.51 355.95 -7.75 -42.26 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.79 Total: 7.98 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.85 Total: 6.53 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.62 Total: -55.05 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.51 -7.75 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430186667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.475 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds