Wall clock time and date at job start Tue Mar 31 2020 03:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99972 * 2 1 4 4 C 1.34776 * 120.00187 * 180.02562 * 2 1 3 5 5 O 1.21278 * 119.99909 * 359.97438 * 4 2 1 6 6 C 1.50703 * 119.99879 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.46807 * 179.97438 * 6 4 2 8 8 N 1.46505 * 109.47199 * 179.97438 * 7 6 4 9 9 C 1.34770 * 119.99997 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00460 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99942 * 180.27587 * 11 9 8 13 13 C 1.53005 * 109.46942 * 178.21726 * 12 11 9 14 14 C 1.50697 * 115.54927 * 65.12975 * 13 12 11 15 15 H 1.08000 * 119.99825 * 265.41127 * 14 13 12 16 16 C 1.37870 * 120.00191 * 85.40713 * 14 13 12 17 17 N 1.31511 * 120.00139 * 353.55966 * 16 14 13 18 18 Si 1.86796 * 120.00125 * 173.55888 * 16 14 13 19 19 H 1.48501 * 109.46996 * 90.00080 * 18 16 14 20 20 H 1.48505 * 109.47390 * 209.99972 * 18 16 14 21 21 H 1.48503 * 109.47242 * 330.00261 * 18 16 14 22 22 C 1.53005 * 117.49892 * 279.45811 * 13 12 11 23 23 C 1.52995 * 117.49601 * 210.80112 * 13 12 11 24 24 H 1.09011 * 109.46805 * 270.00211 * 1 2 3 25 25 H 1.08999 * 109.47140 * 29.99653 * 1 2 3 26 26 H 1.08995 * 109.47147 * 149.99970 * 1 2 3 27 27 H 1.09003 * 109.47563 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47275 * 300.00514 * 3 2 1 29 29 H 1.09000 * 109.47478 * 60.00375 * 3 2 1 30 30 H 1.08999 * 109.47426 * 60.00031 * 6 4 2 31 31 H 1.08994 * 109.46722 * 299.99327 * 6 4 2 32 32 H 1.09009 * 109.47181 * 60.00113 * 7 6 4 33 33 H 1.08997 * 109.47575 * 299.99968 * 7 6 4 34 34 H 0.96999 * 119.99285 * 0.02562 * 8 7 6 35 35 H 0.96998 * 119.99939 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.47336 * 298.21717 * 12 11 9 37 37 H 1.09001 * 109.46683 * 58.22047 * 12 11 9 38 38 H 0.97003 * 120.00760 * 185.06462 * 17 16 14 39 39 H 1.09006 * 117.49485 * 359.97438 * 22 13 12 40 40 H 1.08992 * 117.49885 * 145.01646 * 22 13 12 41 41 H 1.09009 * 117.49505 * 214.98214 * 23 13 12 42 42 H 1.08997 * 117.50195 * 359.97126 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1559 -2.6096 -0.0010 8 7 5.6210 -2.6096 -0.0022 9 6 6.2948 -3.7767 -0.0018 10 8 5.6869 -4.8297 -0.0009 11 7 7.6426 -3.7767 -0.0023 12 6 8.3751 -5.0455 -0.0080 13 6 9.8788 -4.7660 -0.0523 14 6 10.4467 -4.0712 1.1583 15 1 10.5527 -2.9964 1.1638 16 6 10.8307 -4.8074 2.2589 17 7 10.5859 -6.0988 2.3042 18 14 11.6989 -3.9709 3.6857 19 1 10.6915 -3.4934 4.6667 20 1 12.6123 -4.9383 4.3452 21 1 12.4830 -2.8158 3.1794 22 6 10.4956 -4.4329 -1.4123 23 6 10.7671 -5.7909 -0.7602 24 1 -0.3633 0.0000 1.0278 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 3.2691 1.0696 -0.0005 28 1 1.9341 1.8404 -0.8900 29 1 1.9342 1.8403 0.8900 30 1 4.0096 -0.6535 0.8888 31 1 4.0088 -0.6532 -0.8912 32 1 3.7922 -3.1236 -0.8908 33 1 3.7930 -3.1233 0.8892 34 1 6.1059 -1.7695 -0.0025 35 1 8.1276 -2.9367 -0.0027 36 1 8.1364 -5.6069 0.8953 37 1 8.0876 -5.6270 -0.8839 38 1 10.7891 -6.6032 3.1075 39 1 9.8302 -4.4133 -2.2755 40 1 11.3124 -3.7114 -1.4313 41 1 11.7626 -5.9624 -0.3505 42 1 10.2805 -6.6645 -1.1940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430186667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:30 Heat of formation + Delta-G solvation = -66.820798 kcal Electronic energy + Delta-G solvation = -21912.132785 eV Core-core repulsion = 18506.142097 eV Total energy + Delta-G solvation = -3405.990688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18027 -40.68570 -38.55709 -36.63840 -36.17123 -34.93556 -33.94301 -32.10453 -28.98873 -28.04051 -27.32505 -26.63424 -24.07219 -22.93839 -21.89654 -21.22144 -20.28084 -19.16244 -18.26737 -17.95686 -17.29467 -16.91110 -16.79928 -16.64992 -16.40097 -15.71646 -15.35275 -15.19833 -14.90590 -14.43002 -14.20233 -14.06384 -13.61515 -13.43311 -13.40964 -13.34753 -13.17049 -12.89428 -12.82101 -12.52110 -12.46770 -12.31560 -12.01260 -11.52596 -11.32674 -10.96522 -10.82416 -10.44022 -10.30919 -10.02151 -9.71074 -9.57711 -8.06805 -6.20279 1.44431 1.46945 1.54978 1.55466 1.66400 2.18252 2.25949 2.45003 3.21455 3.32320 3.55733 3.69880 3.83281 4.07231 4.28179 4.30233 4.45376 4.52208 4.54132 4.59440 4.68793 4.76609 4.78434 4.86310 4.89671 4.92009 5.00595 5.02755 5.07564 5.30149 5.48944 5.49533 5.61487 5.64419 5.73611 5.81389 6.17987 6.31040 6.39563 6.87250 7.10283 7.28624 7.49299 7.70895 9.00861 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.003041 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.065986 B = 9204.054386 C = 9708.523918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.065 3.935 4 C 0.508 3.492 5 O -0.590 6.590 6 C -0.135 4.135 7 C 0.159 3.841 8 N -0.728 5.728 9 C 0.693 3.307 10 O -0.650 6.650 11 N -0.711 5.711 12 C 0.198 3.802 13 C 0.006 3.994 14 C -0.503 4.503 15 H 0.068 0.932 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.952 3.048 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.260 1.260 22 C -0.173 4.173 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.416 0.584 35 H 0.409 0.591 36 H 0.023 0.977 37 H 0.030 0.970 38 H 0.258 0.742 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 20.733 -5.701 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.355 5.355 3 C -0.076 4.076 4 C 0.296 3.704 5 O -0.471 6.471 6 C -0.175 4.175 7 C 0.033 3.967 8 N -0.386 5.386 9 C 0.393 3.607 10 O -0.533 6.533 11 N -0.365 5.365 12 C 0.073 3.927 13 C 0.006 3.994 14 C -0.541 4.541 15 H 0.086 0.914 16 C -0.179 4.179 17 N -0.548 5.548 18 Si 0.778 3.222 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.185 1.185 22 C -0.210 4.210 23 C -0.200 4.200 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.253 0.747 35 H 0.245 0.755 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.086 19.103 -5.613 24.389 hybrid contribution 0.697 0.206 1.067 1.291 sum -13.389 19.309 -4.546 23.933 Atomic orbital electron populations 1.21722 0.78818 1.03493 1.02236 1.47921 1.07789 1.06987 1.72794 1.22211 0.98280 0.83492 1.03658 1.20943 0.90877 0.83246 0.75294 1.90740 1.71504 1.33098 1.51748 1.21778 0.90807 0.96755 1.08176 1.20663 0.77915 0.96880 1.01199 1.44727 1.06663 1.06853 1.80403 1.16230 0.82241 0.84356 0.77892 1.90864 1.69116 1.32738 1.60576 1.44847 1.03353 1.10556 1.77742 1.20404 0.91173 0.83593 0.97524 1.19046 0.88779 1.00180 0.91432 1.20679 1.41134 0.93202 0.99037 0.91408 1.25750 0.96012 0.95171 1.00952 1.70116 1.48369 1.07988 1.28320 0.85652 0.78573 0.78451 0.79518 1.20623 1.21853 1.18453 1.23006 1.03444 0.98300 0.96244 1.22441 1.00664 0.92194 1.04716 0.92506 0.88156 0.92786 0.88271 0.90138 0.90518 0.84934 0.84471 0.93426 0.94061 0.74681 0.75503 0.95820 0.95143 0.93319 0.89341 0.89281 0.91726 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.48 127.77 1.34 2.34 16 2 N -0.62 -8.48 3.27 -871.88 -2.85 -11.34 16 3 C 0.06 0.27 10.60 127.77 1.35 1.63 16 4 C 0.51 10.55 7.67 87.66 0.67 11.22 16 5 O -0.59 -18.92 15.56 -3.02 -0.05 -18.96 16 6 C -0.14 -1.97 4.12 29.85 0.12 -1.84 16 7 C 0.16 4.22 4.96 86.38 0.43 4.65 16 8 N -0.73 -19.47 5.56 -478.53 -2.66 -22.13 16 9 C 0.69 27.24 8.57 179.05 1.53 28.77 16 10 O -0.65 -32.62 16.34 -3.98 -0.06 -32.68 16 11 N -0.71 -27.56 5.48 -478.53 -2.62 -30.18 16 12 C 0.20 9.34 5.50 86.38 0.48 9.81 16 13 C 0.01 0.30 1.38 -52.93 -0.07 0.23 16 14 C -0.50 -25.32 8.63 25.60 0.22 -25.10 16 15 H 0.07 3.23 7.82 -2.91 -0.02 3.20 16 16 C 0.02 1.14 5.39 84.65 0.46 1.60 16 17 N -0.91 -52.06 12.91 21.44 0.28 -51.78 16 18 Si 0.95 41.85 29.55 68.60 2.03 43.87 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 22 C -0.17 -6.75 9.96 30.62 0.30 -6.44 16 23 C -0.16 -7.40 9.42 30.62 0.29 -7.11 16 24 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 26 H 0.05 0.95 7.42 -2.39 -0.02 0.93 16 27 H 0.10 0.10 5.77 -2.39 -0.01 0.09 16 28 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.13 1.16 7.79 -2.39 -0.02 1.15 16 31 H 0.14 1.05 7.79 -2.39 -0.02 1.03 16 32 H 0.05 1.50 8.10 -2.38 -0.02 1.48 16 33 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.42 7.25 8.49 -92.71 -0.79 6.47 16 35 H 0.41 13.41 8.38 -92.71 -0.78 12.63 16 36 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 39 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -79.42 355.95 0.64 -78.78 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.54 Total: 24.67 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 7.12 Total: 19.75 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -7.86 Total: -115.43 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.11 Total: -51.64 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -79.42 0.64 -78.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430186667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.957 kcal (2) G-P(sol) polarization free energy of solvation -79.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds