Wall clock time and date at job start Tue Mar 31 2020 03:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00013 * 2 1 4 4 O 1.21281 * 119.99485 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47276 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47608 * 179.97438 * 6 5 3 8 8 C 1.46496 * 119.99680 * 270.00094 * 7 6 5 9 9 C 1.34774 * 119.99995 * 89.99785 * 7 6 5 10 10 O 1.21594 * 120.00067 * 4.63399 * 9 7 6 11 11 N 1.34770 * 119.99968 * 184.63576 * 9 7 6 12 12 C 1.46507 * 120.00043 * 174.93046 * 11 9 7 13 13 C 1.52999 * 109.47237 * 184.60424 * 12 11 9 14 14 C 1.50701 * 115.55068 * 306.48556 * 13 12 11 15 15 H 1.07991 * 119.99901 * 144.27648 * 14 13 12 16 16 C 1.37878 * 119.99596 * 324.28000 * 14 13 12 17 17 N 1.31514 * 120.00212 * 3.34965 * 16 14 13 18 18 Si 1.86805 * 119.99735 * 183.35737 * 16 14 13 19 19 H 1.48497 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46917 * 119.99824 * 18 16 14 21 21 H 1.48496 * 109.46977 * 239.99464 * 18 16 14 22 22 C 1.52998 * 117.49741 * 160.81143 * 13 12 11 23 23 C 1.53001 * 117.49767 * 92.15362 * 13 12 11 24 24 H 1.08997 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47187 * 300.00184 * 1 2 3 26 26 H 1.08993 * 109.47256 * 60.00071 * 1 2 3 27 27 H 0.97000 * 119.99774 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47198 * 59.99776 * 5 3 2 29 29 H 1.09003 * 109.47216 * 299.99788 * 5 3 2 30 30 H 1.09003 * 109.47421 * 59.99916 * 6 5 3 31 31 H 1.09003 * 109.47044 * 300.00162 * 6 5 3 32 32 H 1.08996 * 109.47109 * 264.29585 * 8 7 6 33 33 H 1.09001 * 109.47226 * 24.30130 * 8 7 6 34 34 H 1.09003 * 109.46871 * 144.30184 * 8 7 6 35 35 H 0.97004 * 120.00399 * 354.64779 * 11 9 7 36 36 H 1.09000 * 109.46561 * 304.60557 * 12 11 9 37 37 H 1.09001 * 109.47245 * 64.60051 * 12 11 9 38 38 H 0.96999 * 119.99812 * 185.00551 * 17 16 14 39 39 H 1.09000 * 117.50003 * 0.02562 * 22 13 12 40 40 H 1.09002 * 117.49629 * 145.02311 * 22 13 12 41 41 H 1.09000 * 117.49678 * 214.98023 * 23 13 12 42 42 H 1.09006 * 117.50081 * 359.97292 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 -0.0011 7 7 5.6209 2.6098 -0.0011 8 6 6.3533 2.6103 1.2677 9 6 6.2948 2.6093 -1.1682 10 8 5.6899 2.6939 -2.2196 11 7 7.6392 2.5151 -1.1700 12 6 8.3640 2.4027 -2.4383 13 6 9.8537 2.1958 -2.1578 14 6 10.4928 3.2175 -1.2530 15 1 11.2629 2.9169 -0.5582 16 6 10.0942 4.5360 -1.3123 17 7 9.1112 4.8906 -2.1108 18 14 10.9505 5.8189 -0.2585 19 1 12.0149 5.1679 0.5466 20 1 11.5551 6.8550 -1.1338 21 1 9.9618 6.4537 0.6496 22 6 10.7108 1.6155 -3.2846 23 6 10.3621 0.7555 -2.0672 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.0089 0.6536 -0.8908 29 1 4.0096 0.6532 0.8892 30 1 3.7929 3.1238 0.8889 31 1 3.7922 3.1233 -0.8911 32 1 6.6233 3.6329 1.5309 33 1 5.7238 2.1876 2.0508 34 1 7.2578 2.0106 1.1653 35 1 8.1274 2.5258 -0.3318 36 1 7.9790 1.5532 -3.0026 37 1 8.2267 3.3158 -3.0175 38 1 8.8786 5.8273 -2.2073 39 1 10.2134 1.3815 -4.2258 40 1 11.7370 1.9725 -3.3712 41 1 11.1591 0.5472 -1.3534 42 1 9.6352 -0.0446 -2.2070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431198943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:28 Heat of formation + Delta-G solvation = -35.327794 kcal Electronic energy + Delta-G solvation = -22805.669701 eV Core-core repulsion = 19401.044653 eV Total energy + Delta-G solvation = -3404.625049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.90100 -39.15003 -36.83193 -35.15172 -34.68419 -33.15183 -32.19008 -31.13193 -27.41959 -26.42728 -25.74447 -25.14667 -22.92858 -21.22720 -20.52374 -19.24999 -18.94578 -17.62546 -17.26523 -16.26232 -16.05210 -15.64011 -15.38342 -14.98357 -14.66283 -14.01684 -13.91653 -13.68201 -13.27545 -13.04486 -12.70653 -12.63516 -12.53306 -12.42730 -12.05793 -11.95617 -11.69138 -11.35504 -11.10612 -10.88080 -10.71275 -10.50720 -10.24562 -10.00553 -9.69037 -9.31432 -9.23389 -8.94045 -8.84739 -8.31214 -8.25764 -7.62384 -5.98489 -4.19005 2.57327 2.97281 3.20871 3.31509 3.33374 3.46016 4.07604 4.30007 4.68964 4.80655 4.97640 5.04329 5.14897 5.18921 5.28334 5.37939 5.48717 5.54168 5.59208 5.72782 5.94438 5.97855 6.05285 6.17248 6.29317 6.33016 6.57189 6.62742 6.75386 6.86921 6.95548 7.12934 7.27008 7.28538 7.59111 7.66926 7.82422 8.01399 8.10691 8.33062 8.77821 8.99241 9.44390 9.53529 10.90526 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.003963 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.673249 B = 7064.421564 C = 7695.255931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.741 5.741 3 C 0.518 3.482 4 O -0.539 6.539 5 C -0.157 4.157 6 C 0.154 3.846 7 N -0.643 5.643 8 C 0.083 3.917 9 C 0.699 3.301 10 O -0.605 6.605 11 N -0.698 5.698 12 C 0.183 3.817 13 C 0.037 3.963 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.862 5.862 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.199 4.199 23 C -0.212 4.212 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.402 0.598 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.017 0.983 37 H 0.109 0.891 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.501 -10.094 7.572 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.393 5.393 3 C 0.305 3.695 4 O -0.415 6.415 5 C -0.199 4.199 6 C 0.029 3.971 7 N -0.382 5.382 8 C -0.061 4.061 9 C 0.400 3.600 10 O -0.485 6.485 11 N -0.350 5.350 12 C 0.060 3.940 13 C 0.036 3.964 14 C -0.536 4.536 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.498 5.498 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.237 4.237 23 C -0.249 4.249 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.035 0.965 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.498 -9.097 6.768 16.148 hybrid contribution 1.041 0.169 0.938 1.411 sum -10.457 -8.928 7.706 15.762 Atomic orbital electron populations 1.21510 0.79888 1.01988 1.02310 1.45869 1.07702 1.08943 1.76828 1.20745 0.90271 0.83436 0.75061 1.90711 1.70657 1.31247 1.48875 1.22110 0.91041 1.01941 1.04774 1.20830 0.78594 0.93528 1.04149 1.46987 1.05680 1.80287 1.05240 1.21644 0.96933 1.01812 0.85680 1.15946 0.82666 0.78272 0.83102 1.90833 1.68481 1.59042 1.30145 1.44958 1.03241 1.75540 1.11224 1.20895 0.88367 1.00729 0.84034 1.19244 0.91181 0.89683 0.96262 1.20537 1.20842 0.91776 1.20460 0.92103 1.25017 0.94061 0.98533 0.95468 1.69926 1.26307 1.16842 1.36731 0.86547 0.79540 0.81670 0.80346 1.19773 1.20883 1.20970 1.22935 1.01375 1.07013 0.92400 1.22945 1.03737 0.96251 1.02016 0.90846 0.92346 0.92247 0.76451 0.88267 0.89004 0.90533 0.89099 0.92878 0.91559 0.91375 0.76847 0.96453 0.87381 0.92734 0.91468 0.90243 0.90719 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.74 -6.66 5.71 -67.08 -0.38 -7.04 16 3 C 0.52 6.55 7.83 -10.99 -0.09 6.47 16 4 O -0.54 -8.92 15.98 5.56 0.09 -8.83 16 5 C -0.16 -1.90 6.02 -27.89 -0.17 -2.07 16 6 C 0.15 2.35 4.70 -4.04 -0.02 2.34 16 7 N -0.64 -10.88 2.87 -187.35 -0.54 -11.42 16 8 C 0.08 1.11 10.12 59.84 0.61 1.72 16 9 C 0.70 15.13 8.27 -86.93 -0.72 14.41 16 10 O -0.61 -15.27 15.91 5.28 0.08 -15.19 16 11 N -0.70 -15.31 4.95 -65.22 -0.32 -15.63 16 12 C 0.18 4.41 4.61 -4.04 -0.02 4.39 16 13 C 0.04 0.87 2.08 -155.66 -0.32 0.55 16 14 C -0.50 -12.55 8.26 -34.44 -0.28 -12.83 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 17 N -0.86 -23.10 10.17 55.43 0.56 -22.54 16 18 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.20 -4.32 9.96 -26.70 -0.27 -4.59 16 23 C -0.21 -4.38 9.92 -26.69 -0.26 -4.64 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.40 2.42 8.83 -40.82 -0.36 2.06 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 31 H 0.09 1.69 7.32 -51.93 -0.38 1.31 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.66 8.03 -51.93 -0.42 0.25 16 34 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 35 H 0.40 8.28 5.73 -40.82 -0.23 8.05 16 36 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.11 2.99 5.97 -51.93 -0.31 2.68 16 38 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -32.21 350.34 -7.90 -40.11 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.65 Total: 11.47 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.00 Total: 8.84 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.68 Total: -56.63 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.17 Total: -24.02 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.21 -7.90 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431198943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.781 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds