Wall clock time and date at job start Tue Mar 31 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00013 * 2 1 4 4 O 1.21281 * 119.99485 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47276 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47608 * 179.97438 * 6 5 3 8 8 C 1.46496 * 119.99680 * 270.00094 * 7 6 5 9 9 C 1.34774 * 119.99995 * 89.99785 * 7 6 5 10 10 O 1.21594 * 120.00067 * 4.63399 * 9 7 6 11 11 N 1.34770 * 119.99968 * 184.63576 * 9 7 6 12 12 C 1.46507 * 120.00043 * 174.93046 * 11 9 7 13 13 C 1.52999 * 109.47237 * 184.60424 * 12 11 9 14 14 C 1.50701 * 115.55068 * 306.48556 * 13 12 11 15 15 H 1.07991 * 119.99901 * 144.27648 * 14 13 12 16 16 C 1.37878 * 119.99596 * 324.28000 * 14 13 12 17 17 N 1.31514 * 120.00212 * 3.34965 * 16 14 13 18 18 Si 1.86805 * 119.99735 * 183.35737 * 16 14 13 19 19 H 1.48497 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46917 * 119.99824 * 18 16 14 21 21 H 1.48496 * 109.46977 * 239.99464 * 18 16 14 22 22 C 1.52998 * 117.49741 * 160.81143 * 13 12 11 23 23 C 1.53001 * 117.49767 * 92.15362 * 13 12 11 24 24 H 1.08997 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47187 * 300.00184 * 1 2 3 26 26 H 1.08993 * 109.47256 * 60.00071 * 1 2 3 27 27 H 0.97000 * 119.99774 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47198 * 59.99776 * 5 3 2 29 29 H 1.09003 * 109.47216 * 299.99788 * 5 3 2 30 30 H 1.09003 * 109.47421 * 59.99916 * 6 5 3 31 31 H 1.09003 * 109.47044 * 300.00162 * 6 5 3 32 32 H 1.08996 * 109.47109 * 264.29585 * 8 7 6 33 33 H 1.09001 * 109.47226 * 24.30130 * 8 7 6 34 34 H 1.09003 * 109.46871 * 144.30184 * 8 7 6 35 35 H 0.97004 * 120.00399 * 354.64779 * 11 9 7 36 36 H 1.09000 * 109.46561 * 304.60557 * 12 11 9 37 37 H 1.09001 * 109.47245 * 64.60051 * 12 11 9 38 38 H 0.96999 * 119.99812 * 185.00551 * 17 16 14 39 39 H 1.09000 * 117.50003 * 0.02562 * 22 13 12 40 40 H 1.09002 * 117.49629 * 145.02311 * 22 13 12 41 41 H 1.09000 * 117.49678 * 214.98023 * 23 13 12 42 42 H 1.09006 * 117.50081 * 359.97292 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 -0.0011 7 7 5.6209 2.6098 -0.0011 8 6 6.3533 2.6103 1.2677 9 6 6.2948 2.6093 -1.1682 10 8 5.6899 2.6939 -2.2196 11 7 7.6392 2.5151 -1.1700 12 6 8.3640 2.4027 -2.4383 13 6 9.8537 2.1958 -2.1578 14 6 10.4928 3.2175 -1.2530 15 1 11.2629 2.9169 -0.5582 16 6 10.0942 4.5360 -1.3123 17 7 9.1112 4.8906 -2.1108 18 14 10.9505 5.8189 -0.2585 19 1 12.0149 5.1679 0.5466 20 1 11.5551 6.8550 -1.1338 21 1 9.9618 6.4537 0.6496 22 6 10.7108 1.6155 -3.2846 23 6 10.3621 0.7555 -2.0672 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.0089 0.6536 -0.8908 29 1 4.0096 0.6532 0.8892 30 1 3.7929 3.1238 0.8889 31 1 3.7922 3.1233 -0.8911 32 1 6.6233 3.6329 1.5309 33 1 5.7238 2.1876 2.0508 34 1 7.2578 2.0106 1.1653 35 1 8.1274 2.5258 -0.3318 36 1 7.9790 1.5532 -3.0026 37 1 8.2267 3.3158 -3.0175 38 1 8.8786 5.8273 -2.2073 39 1 10.2134 1.3815 -4.2258 40 1 11.7370 1.9725 -3.3712 41 1 11.1591 0.5472 -1.3534 42 1 9.6352 -0.0446 -2.2070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431198943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:27 Heat of formation + Delta-G solvation = -58.048138 kcal Electronic energy + Delta-G solvation = -22806.654929 eV Core-core repulsion = 19401.044653 eV Total energy + Delta-G solvation = -3405.610277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17682 -40.50190 -38.57625 -36.61713 -35.60646 -34.85596 -34.10619 -32.33208 -28.37971 -27.97450 -27.43038 -26.61153 -24.20626 -22.92271 -21.48576 -21.10114 -20.52010 -19.13294 -18.33569 -17.97945 -17.12245 -16.84992 -16.73109 -16.64629 -16.21984 -15.63915 -15.14888 -15.09495 -14.61172 -14.30037 -14.23795 -14.11581 -13.57480 -13.50480 -13.33359 -13.23683 -13.06087 -12.96315 -12.92643 -12.54849 -12.24409 -12.05455 -12.00031 -11.51175 -11.11401 -10.98684 -10.80636 -10.65706 -10.14041 -10.13679 -9.85704 -9.28134 -7.91698 -6.17755 1.42386 1.48370 1.57094 1.59304 1.80317 2.28360 2.43150 2.49965 3.03722 3.38540 3.69619 3.83141 4.03919 4.07945 4.30988 4.36214 4.47519 4.54810 4.57394 4.62085 4.66711 4.78488 4.81618 4.84797 4.93612 4.94961 4.99422 5.03272 5.15642 5.32710 5.44127 5.56493 5.64170 5.68251 5.99191 6.02296 6.15129 6.40961 6.51819 6.85023 7.23246 7.32265 7.47690 7.84777 8.94456 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.003963 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.673249 B = 7064.421564 C = 7695.255931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.724 5.724 3 C 0.515 3.485 4 O -0.586 6.586 5 C -0.144 4.144 6 C 0.153 3.847 7 N -0.635 5.635 8 C 0.078 3.922 9 C 0.693 3.307 10 O -0.649 6.649 11 N -0.694 5.694 12 C 0.197 3.803 13 C 0.008 3.992 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.034 3.966 17 N -0.889 5.889 18 Si 0.949 3.051 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.201 4.201 23 C -0.183 4.183 24 H 0.112 0.888 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.419 0.581 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.401 0.599 36 H 0.013 0.987 37 H 0.068 0.932 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 -12.106 9.706 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.302 3.698 4 O -0.466 6.466 5 C -0.185 4.185 6 C 0.028 3.972 7 N -0.372 5.372 8 C -0.064 4.064 9 C 0.394 3.606 10 O -0.533 6.533 11 N -0.346 5.346 12 C 0.072 3.928 13 C 0.007 3.993 14 C -0.540 4.540 15 H 0.079 0.921 16 C -0.167 4.167 17 N -0.526 5.526 18 Si 0.775 3.225 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.239 4.239 23 C -0.220 4.220 24 H 0.130 0.870 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.256 0.744 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.238 0.762 36 H 0.032 0.968 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.222 -11.176 8.961 18.197 hybrid contribution 0.925 0.740 0.272 1.215 sum -10.297 -10.436 9.233 17.326 Atomic orbital electron populations 1.21674 0.78838 1.04248 1.01345 1.45772 1.08452 1.08636 1.74820 1.20831 0.90474 0.83740 0.74714 1.90698 1.71439 1.33067 1.51420 1.21943 0.90788 0.99648 1.06112 1.20870 0.77524 0.95773 1.02990 1.46994 1.06313 1.78849 1.05057 1.21902 0.97718 1.02030 0.84800 1.16182 0.82535 0.78025 0.83895 1.90796 1.69229 1.60908 1.32355 1.44799 1.03398 1.75712 1.10706 1.20533 0.89259 0.98490 0.84540 1.19268 0.90766 0.91576 0.97666 1.20738 1.20548 0.92262 1.20410 0.92099 1.25616 0.94544 1.00184 0.96398 1.70128 1.27706 1.16413 1.38400 0.85651 0.78650 0.79345 0.78812 1.18767 1.21651 1.21072 1.22961 1.00937 1.07081 0.92936 1.22938 1.03506 0.94746 1.00850 0.86958 0.92838 0.93759 0.74410 0.89159 0.85219 0.88716 0.93263 0.93414 0.87214 0.91041 0.76231 0.96842 0.91367 0.93573 0.90778 0.90361 0.89589 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.70 127.77 1.37 2.49 16 2 N -0.72 -11.47 5.71 -484.53 -2.77 -14.24 16 3 C 0.52 12.48 7.83 87.65 0.69 13.17 16 4 O -0.59 -19.54 15.98 -3.03 -0.05 -19.58 16 5 C -0.14 -3.24 6.02 29.84 0.18 -3.06 16 6 C 0.15 4.61 4.70 86.38 0.41 5.02 16 7 N -0.63 -20.99 2.87 -864.92 -2.49 -23.48 16 8 C 0.08 1.89 10.12 127.77 1.29 3.18 16 9 C 0.69 30.40 8.27 179.06 1.48 31.88 16 10 O -0.65 -34.06 15.91 -4.01 -0.06 -34.12 16 11 N -0.69 -30.59 4.95 -478.53 -2.37 -32.96 16 12 C 0.20 9.60 4.61 86.38 0.40 10.00 16 13 C 0.01 0.37 2.08 -52.93 -0.11 0.26 16 14 C -0.50 -24.89 8.26 25.60 0.21 -24.68 16 15 H 0.06 2.97 7.81 -2.92 -0.02 2.94 16 16 C 0.03 1.74 5.29 84.65 0.45 2.19 16 17 N -0.89 -48.73 10.17 21.45 0.22 -48.51 16 18 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.20 -8.50 9.96 30.62 0.30 -8.20 16 23 C -0.18 -7.13 9.92 30.62 0.30 -6.83 16 24 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.42 3.75 8.83 -92.71 -0.82 2.93 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.51 8.03 -2.39 -0.02 2.49 16 31 H 0.05 1.91 7.32 -2.39 -0.02 1.89 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.73 8.03 -2.39 -0.02 1.72 16 34 H 0.07 1.72 6.57 -2.39 -0.02 1.70 16 35 H 0.40 16.55 5.73 -92.71 -0.53 16.02 16 36 H 0.01 0.65 8.08 -2.39 -0.02 0.63 16 37 H 0.07 3.92 5.97 -2.39 -0.01 3.91 16 38 H 0.25 13.82 8.32 -92.71 -0.77 13.05 16 39 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 Total: -1.00 -72.26 350.34 1.16 -71.10 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.32 Total: 33.44 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 6.97 Total: 25.41 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -7.41 Total: -119.18 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.11 Total: -53.70 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -72.26 1.16 -71.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431198943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.054 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds