Wall clock time and date at job start Tue Mar 31 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.45641 * 117.70739 * 90.00072 * 3 2 1 5 5 C 1.52985 * 110.77652 * 158.10045 * 4 3 2 6 6 N 1.47274 * 108.18684 * 46.72445 * 5 4 3 7 7 C 1.34770 * 121.35383 * 118.47467 * 6 5 4 8 8 O 1.21585 * 120.00508 * 184.93908 * 7 6 5 9 9 N 1.34785 * 119.99860 * 4.93456 * 7 6 5 10 10 C 1.46497 * 119.99793 * 174.96923 * 9 7 6 11 11 C 1.52995 * 109.47362 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47505 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00087 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99888 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00226 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99773 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47274 * 59.99792 * 16 14 12 18 18 H 1.48503 * 109.47314 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47396 * 300.00035 * 16 14 12 20 20 C 1.47046 * 117.29208 * 298.74935 * 6 5 4 21 21 H 1.09000 * 109.56696 * 282.66444 * 20 6 5 22 22 C 1.52999 * 109.56779 * 162.31189 * 20 6 5 23 23 C 1.33388 * 117.70219 * 270.02152 * 3 2 1 24 24 O 1.21280 * 118.48836 * 4.32065 * 23 3 2 25 25 H 1.08997 * 109.46979 * 60.00338 * 1 2 3 26 26 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47212 * 300.00024 * 1 2 3 28 28 H 1.09000 * 109.47212 * 239.99976 * 2 1 3 29 29 H 1.09004 * 109.47396 * 119.99691 * 2 1 3 30 30 H 1.09000 * 109.21706 * 37.76078 * 4 3 2 31 31 H 1.09002 * 109.18068 * 278.41537 * 4 3 2 32 32 H 1.09000 * 109.72184 * 287.05320 * 5 4 3 33 33 H 1.08993 * 109.75840 * 166.41400 * 5 4 3 34 34 H 0.96996 * 119.99887 * 354.96729 * 9 7 6 35 35 H 1.09008 * 109.47200 * 60.00093 * 10 9 7 36 36 H 1.09000 * 109.47471 * 300.00333 * 10 9 7 37 37 H 1.09000 * 109.47093 * 300.00556 * 11 10 9 38 38 H 1.09008 * 109.46895 * 59.99897 * 11 10 9 39 39 H 0.97008 * 120.00275 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.47453 * 69.31159 * 22 20 6 41 41 H 1.09004 * 109.47253 * 189.31567 * 22 20 6 42 42 H 1.09006 * 109.46887 * 309.31392 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2441 2.0197 1.2894 5 6 3.2228 3.1876 1.1528 6 7 2.8117 3.9987 -0.0056 7 6 2.4487 5.2890 0.1352 8 8 2.0281 5.9102 -0.8217 9 7 2.5518 5.8908 1.3368 10 6 2.2627 7.3210 1.4669 11 6 2.4545 7.7498 2.9229 12 6 2.1564 9.2209 3.0569 13 1 1.8603 9.7930 2.1902 14 6 2.2629 9.8367 4.2860 15 7 2.6240 9.1402 5.3414 16 14 1.8941 11.6604 4.4519 17 1 0.4913 11.9213 4.0401 18 1 2.0801 12.0765 5.8652 19 1 2.8170 12.4332 3.5823 20 6 2.8073 3.3419 -1.3212 21 1 3.8285 3.2664 -1.6949 22 6 1.9604 4.1589 -2.2991 23 6 2.2246 1.9660 -1.1810 24 8 1.9245 1.3592 -2.1872 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.6538 1.2877 1.9854 31 1 1.2949 2.3904 1.6765 32 1 4.2314 2.8056 0.9949 33 1 3.1975 3.7971 2.0560 34 1 2.8175 5.3769 2.1153 35 1 1.2333 7.5127 1.1639 36 1 2.9407 7.8883 0.8292 37 1 1.7768 7.1825 3.5610 38 1 3.4840 7.5582 3.2255 39 1 2.6985 9.5734 6.2062 40 1 2.4676 5.0973 -2.5229 41 1 1.8209 3.5925 -3.2199 42 1 0.9891 4.3688 -1.8509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488509584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:31 Heat of formation + Delta-G solvation = -68.825396 kcal Electronic energy + Delta-G solvation = -22994.934406 eV Core-core repulsion = 19588.856793 eV Total energy + Delta-G solvation = -3406.077614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22890 -40.65937 -37.72534 -37.02543 -36.24453 -34.93185 -32.83045 -32.22909 -30.87434 -29.34339 -26.94639 -26.09186 -24.47261 -23.78521 -22.84398 -21.67482 -19.91704 -18.87762 -18.47088 -18.38150 -17.36284 -17.20105 -16.75578 -16.45944 -16.37244 -15.74392 -15.31146 -14.98952 -14.81195 -14.67662 -14.29912 -14.14133 -14.04084 -13.77570 -13.30287 -13.19173 -13.07964 -12.91166 -12.78518 -12.72698 -12.55220 -12.50652 -12.18380 -11.88224 -11.58668 -11.41445 -11.34912 -10.57224 -10.54279 -10.10784 -9.86151 -9.56878 -8.21821 -6.31241 1.32758 1.43521 1.45588 1.46332 1.53939 1.90415 2.10697 2.42236 2.91670 3.13378 3.32474 3.68636 3.88222 4.03266 4.09597 4.17318 4.23778 4.34441 4.45714 4.52238 4.55996 4.59493 4.69923 4.77169 4.85086 4.90092 4.91217 4.98221 5.09584 5.25725 5.27356 5.42036 5.46211 5.56423 5.63428 5.76776 5.85392 6.20226 6.28128 6.81504 6.94640 6.96191 7.37803 7.54370 8.89624 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029960 B = 0.003355 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.369341 B = 8343.561415 C = 8866.241080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.597 5.597 4 C 0.096 3.904 5 C 0.089 3.911 6 N -0.631 5.631 7 C 0.705 3.295 8 O -0.618 6.618 9 N -0.730 5.730 10 C 0.161 3.839 11 C 0.026 3.974 12 C -0.547 4.547 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.153 3.847 21 H 0.119 0.881 22 C -0.116 4.116 23 C 0.511 3.489 24 O -0.575 6.575 25 H 0.027 0.973 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.405 0.595 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.009 0.991 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -19.897 -5.244 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.329 5.329 4 C -0.027 4.027 5 C -0.033 4.033 6 N -0.371 5.371 7 C 0.407 3.593 8 O -0.498 6.498 9 N -0.387 5.387 10 C 0.037 3.963 11 C -0.012 4.012 12 C -0.586 4.586 13 H 0.076 0.924 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.194 1.194 20 C 0.047 3.953 21 H 0.136 0.864 22 C -0.174 4.174 23 C 0.298 3.702 24 O -0.454 6.454 25 H 0.047 0.953 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.243 0.757 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.542 -19.704 -6.231 20.723 hybrid contribution -0.230 0.911 0.573 1.100 sum 1.312 -18.793 -5.658 19.670 Atomic orbital electron populations 1.22058 0.95969 1.03013 1.01079 1.21723 0.94612 0.81412 1.04384 1.47427 1.64213 1.15352 1.05874 1.22061 1.00239 0.96174 0.84244 1.22360 0.99697 0.92233 0.89047 1.47398 1.71544 1.09400 1.08804 1.15978 0.78426 0.81362 0.83532 1.90917 1.53710 1.65906 1.39310 1.45415 1.73283 1.11028 1.08953 1.21079 0.98830 0.78122 0.98292 1.19109 0.96429 0.95491 0.90170 1.21440 1.46897 0.95443 0.94794 0.92441 1.25799 0.94722 1.02889 0.95477 1.70030 1.48226 1.37986 1.00138 0.85563 0.79028 0.79648 0.77195 1.19541 1.20623 1.19440 1.21113 1.01793 0.88385 0.84036 0.86410 1.21840 0.99318 0.99262 0.97000 1.20331 0.78099 0.88223 0.83525 1.90698 1.53022 1.64698 1.37019 0.95325 0.89720 0.92131 0.91007 0.86646 0.84887 0.91454 0.87389 0.86889 0.75723 0.94001 0.93682 0.97219 0.97034 0.92559 0.90405 0.92066 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.23 71.98 0.74 -1.80 16 2 C 0.10 1.43 5.88 86.38 0.51 1.94 16 3 N -0.60 -10.59 2.81 -826.86 -2.32 -12.91 16 4 C 0.10 1.13 6.57 86.54 0.57 1.70 16 5 C 0.09 1.26 6.52 86.23 0.56 1.82 16 6 N -0.63 -15.25 2.98 -817.76 -2.44 -17.69 16 7 C 0.71 23.20 8.16 179.05 1.46 24.67 16 8 O -0.62 -25.03 12.22 -3.98 -0.05 -25.08 16 9 N -0.73 -23.87 5.48 -478.53 -2.62 -26.49 16 10 C 0.16 6.67 5.62 86.38 0.49 7.16 16 11 C 0.03 1.23 5.09 29.85 0.15 1.38 16 12 C -0.55 -29.82 9.11 25.60 0.23 -29.59 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 14 C 0.01 0.56 5.46 84.66 0.46 1.02 16 15 N -0.92 -52.63 13.29 21.45 0.28 -52.34 16 16 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 C 0.15 3.82 3.66 43.95 0.16 3.98 16 21 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 22 C -0.12 -3.50 7.57 71.98 0.55 -2.95 16 23 C 0.51 12.62 7.07 87.68 0.62 13.24 16 24 O -0.57 -17.77 15.46 -3.03 -0.05 -17.82 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.26 7.23 -2.39 -0.02 1.25 16 29 H 0.12 0.80 7.80 -2.39 -0.02 0.78 16 30 H 0.13 0.54 7.84 -2.39 -0.02 0.52 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.40 5.65 -2.39 -0.01 1.39 16 34 H 0.40 10.80 6.00 -92.71 -0.56 10.24 16 35 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.08 2.55 6.51 -2.39 -0.02 2.54 16 41 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16 42 H 0.04 1.40 7.21 -2.38 -0.02 1.39 16 Total: -1.00 -72.18 337.34 1.79 -70.39 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.46 Total: 14.56 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 6.50 Total: 22.56 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -7.09 Total: -109.44 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.10 Total: -42.90 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.18 1.79 -70.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488509584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.565 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds