Wall clock time and date at job start Tue Mar 31 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47054 * 2 1 4 4 C 1.36944 * 119.99761 * 274.32865 * 3 2 1 5 5 H 1.08007 * 119.99506 * 337.80619 * 4 3 2 6 6 C 1.38807 * 120.00484 * 157.80603 * 4 3 2 7 7 N 1.31623 * 119.99735 * 7.72543 * 6 4 3 8 8 Si 1.86792 * 120.00291 * 187.72756 * 6 4 3 9 9 H 1.48501 * 109.47298 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47356 * 119.99848 * 8 6 4 11 11 H 1.48505 * 109.47104 * 239.99768 * 8 6 4 12 12 C 1.46493 * 120.00344 * 94.32819 * 3 2 1 13 13 C 1.50701 * 109.47221 * 269.99911 * 12 3 2 14 14 O 1.21236 * 119.99638 * 359.97438 * 13 12 3 15 15 N 1.34778 * 120.00320 * 180.02562 * 13 12 3 16 16 C 1.34772 * 119.99728 * 180.02562 * 15 13 12 17 17 O 1.21533 * 120.00515 * 0.02562 * 16 15 13 18 18 N 1.34779 * 119.99733 * 179.97438 * 16 15 13 19 19 C 1.46496 * 120.00326 * 180.02562 * 18 16 15 20 20 C 1.54273 * 110.02972 * 272.63527 * 19 18 16 21 21 C 1.54968 * 104.15649 * 217.13607 * 20 19 18 22 22 C 1.54882 * 102.78016 * 37.88497 * 21 20 19 23 23 C 1.53871 * 110.03679 * 155.41711 * 19 18 16 24 24 H 1.09003 * 109.46858 * 60.00695 * 1 2 3 25 25 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47450 * 300.00217 * 1 2 3 27 27 H 1.08996 * 109.47347 * 239.99250 * 2 1 3 28 28 H 1.09003 * 109.46858 * 119.99305 * 2 1 3 29 29 H 0.96996 * 120.00207 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47279 * 149.99884 * 12 3 2 31 31 H 1.09000 * 109.47534 * 29.99668 * 12 3 2 32 32 H 0.96998 * 119.99460 * 359.97438 * 15 13 12 33 33 H 0.97000 * 119.99793 * 359.72572 * 18 16 15 34 34 H 1.09003 * 110.01870 * 34.01848 * 19 18 16 35 35 H 1.09001 * 110.48599 * 335.77840 * 20 19 18 36 36 H 1.08996 * 110.48630 * 98.42856 * 20 19 18 37 37 H 1.09008 * 110.71737 * 279.57178 * 21 20 19 38 38 H 1.09002 * 110.92468 * 156.29632 * 21 20 19 39 39 H 1.09004 * 110.48651 * 203.40796 * 22 21 20 40 40 H 1.09005 * 110.60002 * 80.81993 * 22 21 20 41 41 H 1.09002 * 110.03282 * 238.56575 * 23 19 18 42 42 H 1.09006 * 110.03227 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1622 2.0566 -1.1826 5 1 2.2702 1.5091 -2.1074 6 6 2.1691 3.4446 -1.1929 7 7 2.1907 4.1110 -0.0581 8 14 2.1475 4.3667 -2.8172 9 1 2.1251 3.3935 -3.9387 10 1 0.9381 5.2260 -2.8826 11 1 3.3628 5.2137 -2.9217 12 6 2.3528 2.0399 1.2650 13 6 1.1317 2.7381 1.8060 14 8 0.0857 2.6905 1.1950 15 7 1.2028 3.4162 2.9686 16 6 0.1106 4.0401 3.4526 17 8 -0.9385 3.9909 2.8410 18 7 0.1815 4.7179 4.6154 19 6 -1.0057 5.3956 5.1419 20 6 -1.1040 6.8198 4.5572 21 6 -1.6440 7.6751 5.7312 22 6 -0.9207 7.0677 6.9587 23 6 -0.8896 5.5529 6.6681 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.1952 5.0809 -0.0652 30 1 3.1441 2.7704 1.0962 31 1 2.6935 1.2947 1.9838 32 1 2.0398 3.4546 3.4572 33 1 1.0176 4.7532 5.1059 34 1 -1.9015 4.8269 4.8922 35 1 -0.1206 7.1741 4.2482 36 1 -1.7991 6.8405 3.7179 37 1 -2.7243 7.5632 5.8249 38 1 -1.3754 8.7239 5.6046 39 1 -1.4821 7.2697 7.8709 40 1 0.0925 7.4613 7.0404 41 1 -1.7295 5.0613 7.1592 42 1 0.0500 5.1246 7.0173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532948376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:18 Heat of formation + Delta-G solvation = -42.696459 kcal Electronic energy + Delta-G solvation = -23409.792215 eV Core-core repulsion = 20004.847637 eV Total energy + Delta-G solvation = -3404.944578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15884 -38.41500 -36.93897 -35.14870 -33.60914 -32.76824 -31.79357 -29.18810 -28.79847 -27.66347 -26.62405 -23.70108 -22.00192 -20.78680 -20.33203 -20.15458 -19.28983 -18.26863 -16.72276 -16.23489 -15.61860 -15.23621 -15.18273 -14.74240 -14.20476 -13.84012 -13.66390 -13.50260 -13.43525 -12.79486 -12.61210 -12.04276 -11.95358 -11.70983 -11.47755 -11.28718 -11.17493 -11.13119 -10.89801 -10.81128 -10.74081 -10.70547 -10.38115 -10.06527 -9.96936 -9.81012 -9.69658 -8.91617 -8.74229 -8.63063 -8.14297 -6.82849 -5.83056 -3.21096 3.14856 3.38410 3.42787 3.49253 3.51580 4.41784 4.45915 4.51728 4.62461 4.72343 4.84777 5.31311 5.39902 5.41312 5.47923 5.48828 5.52723 5.56749 5.68997 5.77904 5.94784 6.10264 6.13035 6.16760 6.24330 6.27933 6.42808 6.51249 6.68019 6.72208 6.83223 7.04521 7.08952 7.27730 7.47969 7.65720 7.75626 8.27078 8.39955 9.15662 9.22904 9.65744 9.82881 10.26018 11.25122 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.004631 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.698588 B = 6044.710062 C = 6830.146118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 N -0.578 5.578 4 C -0.240 4.240 5 H 0.077 0.923 6 C 0.006 3.994 7 N -0.913 5.913 8 Si 0.912 3.088 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.169 3.831 13 C 0.521 3.479 14 O -0.468 6.468 15 N -0.694 5.694 16 C 0.691 3.309 17 O -0.542 6.542 18 N -0.746 5.746 19 C 0.159 3.841 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.130 4.130 24 H 0.051 0.949 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.254 0.746 30 H 0.123 0.877 31 H 0.031 0.969 32 H 0.394 0.606 33 H 0.391 0.609 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 2.725 15.691 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 N -0.297 5.297 4 C -0.369 4.369 5 H 0.094 0.906 6 C -0.190 4.190 7 N -0.560 5.560 8 Si 0.743 3.257 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.038 3.962 13 C 0.307 3.693 14 O -0.334 6.334 15 N -0.360 5.360 16 C 0.392 3.608 17 O -0.415 6.415 18 N -0.404 5.404 19 C 0.053 3.947 20 C -0.175 4.175 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.049 0.951 32 H 0.226 0.774 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.549 2.713 14.595 14.926 hybrid contribution 0.613 0.981 -0.273 1.188 sum -0.937 3.694 14.322 14.820 Atomic orbital electron populations 1.22340 0.98977 0.97986 1.03054 1.20892 0.92587 0.86334 0.98408 1.43854 1.73738 1.09908 1.02236 1.19318 1.42426 0.88916 0.86230 0.90566 1.24913 1.00369 0.96552 0.97176 1.69599 1.55762 1.06641 1.24014 0.86059 0.77089 0.79632 0.82937 1.20424 1.21674 1.21921 1.20775 0.94043 0.95151 0.86202 1.22693 0.92463 0.77621 0.76545 1.90611 1.31507 1.57370 1.53869 1.44800 1.12203 1.52929 1.26055 1.16483 0.85008 0.78504 0.80834 1.90993 1.28543 1.63466 1.58471 1.45558 1.13565 1.57035 1.24239 1.21408 0.88737 0.92761 0.91823 1.22836 1.01996 0.94628 0.98064 1.22491 0.99998 0.99089 0.94665 1.22344 1.00736 0.94878 0.98109 1.22437 1.02552 0.96936 0.94918 0.92960 0.95502 0.92488 0.93792 0.94473 0.93528 0.85997 0.95113 0.77364 0.77531 0.89366 0.91118 0.91075 0.91438 0.91549 0.91663 0.91550 0.90906 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.65 37.16 0.36 -3.25 16 2 C 0.14 3.09 6.44 -4.04 -0.03 3.06 16 3 N -0.58 -14.41 2.07 -174.61 -0.36 -14.77 16 4 C -0.24 -6.58 9.70 -15.06 -0.15 -6.72 16 5 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 6 C 0.01 0.17 5.41 -17.43 -0.09 0.08 16 7 N -0.91 -25.48 8.21 55.49 0.46 -25.03 16 8 Si 0.91 22.62 29.56 -169.99 -5.02 17.60 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C 0.17 3.84 5.47 -5.20 -0.03 3.82 16 13 C 0.52 12.55 5.73 -10.98 -0.06 12.48 16 14 O -0.47 -13.68 12.29 -18.21 -0.22 -13.90 16 15 N -0.69 -13.35 5.24 -15.78 -0.08 -13.43 16 16 C 0.69 13.83 8.50 -86.92 -0.74 13.09 16 17 O -0.54 -13.93 14.40 -18.47 -0.27 -14.20 16 18 N -0.75 -10.49 5.05 -57.59 -0.29 -10.78 16 19 C 0.16 2.05 3.24 -66.81 -0.22 1.83 16 20 C -0.14 -1.75 6.54 -25.03 -0.16 -1.91 16 21 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 22 C -0.12 -1.00 6.83 -25.08 -0.17 -1.17 16 23 C -0.13 -1.18 6.57 -25.62 -0.17 -1.35 16 24 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.39 6.39 -51.93 -0.33 1.05 16 27 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.04 0.70 7.84 -51.93 -0.41 0.29 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.12 2.92 6.24 -51.93 -0.32 2.60 16 31 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 32 H 0.39 5.66 8.71 -40.82 -0.36 5.30 16 33 H 0.39 4.09 8.32 -40.82 -0.34 3.75 16 34 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.56 7.61 -51.93 -0.40 0.16 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -36.02 337.07 -9.06 -45.08 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.72 Total: 5.74 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: -1.63 Total: 18.61 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.28 Total: -64.00 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.49 Total: -28.10 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.02 -9.06 -45.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532948376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.381 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds