Wall clock time and date at job start Tue Mar 31 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47054 * 2 1 4 4 C 1.36944 * 119.99761 * 274.32865 * 3 2 1 5 5 H 1.08007 * 119.99506 * 337.80619 * 4 3 2 6 6 C 1.38807 * 120.00484 * 157.80603 * 4 3 2 7 7 N 1.31623 * 119.99735 * 7.72543 * 6 4 3 8 8 Si 1.86792 * 120.00291 * 187.72756 * 6 4 3 9 9 H 1.48501 * 109.47298 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47356 * 119.99848 * 8 6 4 11 11 H 1.48505 * 109.47104 * 239.99768 * 8 6 4 12 12 C 1.46493 * 120.00344 * 94.32819 * 3 2 1 13 13 C 1.50701 * 109.47221 * 269.99911 * 12 3 2 14 14 O 1.21236 * 119.99638 * 359.97438 * 13 12 3 15 15 N 1.34778 * 120.00320 * 180.02562 * 13 12 3 16 16 C 1.34772 * 119.99728 * 180.02562 * 15 13 12 17 17 O 1.21533 * 120.00515 * 0.02562 * 16 15 13 18 18 N 1.34779 * 119.99733 * 179.97438 * 16 15 13 19 19 C 1.46496 * 120.00326 * 180.02562 * 18 16 15 20 20 C 1.54273 * 110.02972 * 272.63527 * 19 18 16 21 21 C 1.54968 * 104.15649 * 217.13607 * 20 19 18 22 22 C 1.54882 * 102.78016 * 37.88497 * 21 20 19 23 23 C 1.53871 * 110.03679 * 155.41711 * 19 18 16 24 24 H 1.09003 * 109.46858 * 60.00695 * 1 2 3 25 25 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47450 * 300.00217 * 1 2 3 27 27 H 1.08996 * 109.47347 * 239.99250 * 2 1 3 28 28 H 1.09003 * 109.46858 * 119.99305 * 2 1 3 29 29 H 0.96996 * 120.00207 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47279 * 149.99884 * 12 3 2 31 31 H 1.09000 * 109.47534 * 29.99668 * 12 3 2 32 32 H 0.96998 * 119.99460 * 359.97438 * 15 13 12 33 33 H 0.97000 * 119.99793 * 359.72572 * 18 16 15 34 34 H 1.09003 * 110.01870 * 34.01848 * 19 18 16 35 35 H 1.09001 * 110.48599 * 335.77840 * 20 19 18 36 36 H 1.08996 * 110.48630 * 98.42856 * 20 19 18 37 37 H 1.09008 * 110.71737 * 279.57178 * 21 20 19 38 38 H 1.09002 * 110.92468 * 156.29632 * 21 20 19 39 39 H 1.09004 * 110.48651 * 203.40796 * 22 21 20 40 40 H 1.09005 * 110.60002 * 80.81993 * 22 21 20 41 41 H 1.09002 * 110.03282 * 238.56575 * 23 19 18 42 42 H 1.09006 * 110.03227 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1622 2.0566 -1.1826 5 1 2.2702 1.5091 -2.1074 6 6 2.1691 3.4446 -1.1929 7 7 2.1907 4.1110 -0.0581 8 14 2.1475 4.3667 -2.8172 9 1 2.1251 3.3935 -3.9387 10 1 0.9381 5.2260 -2.8826 11 1 3.3628 5.2137 -2.9217 12 6 2.3528 2.0399 1.2650 13 6 1.1317 2.7381 1.8060 14 8 0.0857 2.6905 1.1950 15 7 1.2028 3.4162 2.9686 16 6 0.1106 4.0401 3.4526 17 8 -0.9385 3.9909 2.8410 18 7 0.1815 4.7179 4.6154 19 6 -1.0057 5.3956 5.1419 20 6 -1.1040 6.8198 4.5572 21 6 -1.6440 7.6751 5.7312 22 6 -0.9207 7.0677 6.9587 23 6 -0.8896 5.5529 6.6681 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.1952 5.0809 -0.0652 30 1 3.1441 2.7704 1.0962 31 1 2.6935 1.2947 1.9838 32 1 2.0398 3.4546 3.4572 33 1 1.0176 4.7532 5.1059 34 1 -1.9015 4.8269 4.8922 35 1 -0.1206 7.1741 4.2482 36 1 -1.7991 6.8405 3.7179 37 1 -2.7243 7.5632 5.8249 38 1 -1.3754 8.7239 5.6046 39 1 -1.4821 7.2697 7.8709 40 1 0.0925 7.4613 7.0404 41 1 -1.7295 5.0613 7.1592 42 1 0.0500 5.1246 7.0173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532948376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:17 Heat of formation + Delta-G solvation = -67.466142 kcal Electronic energy + Delta-G solvation = -23410.866309 eV Core-core repulsion = 20004.847637 eV Total energy + Delta-G solvation = -3406.018672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76120 -39.76982 -38.44915 -36.99766 -35.30618 -34.19370 -33.76280 -31.01805 -29.64770 -29.08601 -28.16670 -25.61441 -23.56981 -22.09512 -21.55824 -21.39052 -20.94182 -19.81067 -18.63987 -17.67851 -17.12470 -16.86530 -16.52857 -16.21665 -15.74056 -15.64154 -15.35481 -14.91598 -14.58834 -14.39060 -14.25809 -13.91682 -13.48460 -13.10797 -13.03723 -12.89641 -12.62754 -12.47549 -12.26370 -12.03756 -12.01247 -11.96209 -11.88010 -11.78335 -11.62602 -11.46463 -11.43510 -10.77349 -10.68949 -10.10346 -9.97582 -8.78556 -7.91157 -5.28203 1.39955 1.47177 1.52652 1.69896 1.72781 2.47604 2.81399 3.25506 3.40026 3.61726 3.70215 3.72471 4.00702 4.42702 4.44431 4.49341 4.52562 4.54591 4.63710 4.72485 4.79121 4.83243 4.91006 4.97433 5.03608 5.04215 5.13639 5.22344 5.28607 5.28948 5.42450 5.46261 5.60535 5.60875 5.65097 5.71432 6.02484 6.34578 6.93529 7.15825 7.66596 7.79412 7.95327 8.24460 9.12979 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.004631 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.698588 B = 6044.710062 C = 6830.146118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 N -0.594 5.594 4 C -0.247 4.247 5 H 0.075 0.925 6 C -0.042 4.042 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.314 1.314 11 H -0.282 1.282 12 C 0.170 3.830 13 C 0.522 3.478 14 O -0.525 6.525 15 N -0.681 5.681 16 C 0.687 3.313 17 O -0.604 6.604 18 N -0.718 5.718 19 C 0.151 3.849 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.120 4.120 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.243 0.757 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.419 0.581 33 H 0.413 0.587 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 2.435 18.033 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 N -0.314 5.314 4 C -0.377 4.377 5 H 0.093 0.907 6 C -0.237 4.237 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.243 1.243 11 H -0.209 1.209 12 C 0.039 3.961 13 C 0.310 3.690 14 O -0.396 6.396 15 N -0.348 5.348 16 C 0.387 3.613 17 O -0.481 6.481 18 N -0.377 5.377 19 C 0.046 3.954 20 C -0.179 4.179 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.158 4.158 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.256 0.744 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.036 2.428 17.025 17.197 hybrid contribution 0.147 1.036 -0.950 1.413 sum 0.111 3.464 16.075 16.444 Atomic orbital electron populations 1.22195 0.99686 0.99330 0.99898 1.21091 0.91867 0.85014 1.00567 1.44113 1.74014 1.11060 1.02218 1.19542 1.41534 0.89220 0.87391 0.90693 1.25510 1.01260 0.97469 0.99420 1.69756 1.56670 1.05732 1.24791 0.85282 0.76106 0.78537 0.80944 1.19250 1.24259 1.20886 1.20844 0.92870 0.95921 0.86473 1.22969 0.91962 0.77215 0.76899 1.90595 1.33560 1.59467 1.55936 1.44381 1.13301 1.51916 1.25176 1.16711 0.84109 0.78640 0.81804 1.90959 1.30826 1.65648 1.60636 1.45340 1.15143 1.55026 1.22166 1.21609 0.86998 0.91931 0.94887 1.22809 1.00943 0.95602 0.98525 1.22478 1.00328 0.99091 0.93759 1.22343 1.01491 0.93525 0.97888 1.22404 1.04102 0.98231 0.91043 0.96388 0.91757 0.95288 0.92653 0.91092 0.94723 0.87222 0.90517 0.74430 0.74893 0.92411 0.91767 0.94538 0.91144 0.90484 0.89504 0.90430 0.89875 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.61 9.65 71.98 0.69 -5.91 16 2 C 0.14 5.75 6.44 86.38 0.56 6.31 16 3 N -0.59 -29.20 2.07 -706.35 -1.46 -30.66 16 4 C -0.25 -13.54 9.70 84.03 0.81 -12.73 16 5 H 0.08 4.02 7.84 -2.91 -0.02 4.00 16 6 C -0.04 -2.38 5.41 84.86 0.46 -1.92 16 7 N -0.92 -52.20 8.21 21.65 0.18 -52.02 16 8 Si 0.96 47.20 29.56 68.60 2.03 49.23 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.31 -16.58 7.11 99.48 0.71 -15.88 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.17 7.51 5.47 85.63 0.47 7.97 16 13 C 0.52 25.29 5.73 87.66 0.50 25.79 16 14 O -0.53 -31.72 12.29 19.87 0.24 -31.47 16 15 N -0.68 -25.94 5.24 -440.53 -2.31 -28.25 16 16 C 0.69 27.86 8.50 179.06 1.52 29.38 16 17 O -0.60 -32.50 14.40 18.94 0.27 -32.22 16 18 N -0.72 -19.59 5.05 -454.40 -2.29 -21.88 16 19 C 0.15 3.85 3.24 45.72 0.15 4.00 16 20 C -0.14 -3.64 6.54 31.70 0.21 -3.43 16 21 C -0.12 -2.07 6.91 31.91 0.22 -1.85 16 22 C -0.11 -1.46 6.83 31.67 0.22 -1.24 16 23 C -0.12 -1.82 6.57 31.32 0.21 -1.61 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.03 1.40 6.39 -2.39 -0.02 1.39 16 27 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 28 H 0.07 2.43 7.84 -2.39 -0.02 2.41 16 29 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.11 5.17 6.24 -2.39 -0.01 5.15 16 31 H 0.08 2.67 7.86 -2.39 -0.02 2.65 16 32 H 0.42 11.29 8.71 -92.71 -0.81 10.48 16 33 H 0.41 7.61 8.32 -92.71 -0.77 6.84 16 34 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 35 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.06 7.61 -2.38 -0.02 1.04 16 Total: -1.00 -82.77 337.07 2.13 -80.64 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.55 Total: 21.88 kcal Atomic # 6 Polarization: 38.74 SS G_CDS: 6.01 Total: 44.75 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.88 Total: -132.81 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: 0.52 Total: -63.69 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -82.77 2.13 -80.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532948376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.178 kcal (2) G-P(sol) polarization free energy of solvation -82.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds