Wall clock time and date at job start Tue Mar 31 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47299 * 2 1 4 4 C 1.34767 * 120.00203 * 180.02562 * 3 2 1 5 5 O 1.21535 * 120.00462 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99809 * 180.02562 * 4 3 2 7 7 C 1.34780 * 119.99663 * 180.02562 * 6 4 3 8 8 O 1.21230 * 120.00195 * 359.97438 * 7 6 4 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 4 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 6 11 11 C 1.46839 * 111.00222 * 294.20814 * 10 9 7 12 12 C 1.53034 * 109.52552 * 174.16216 * 11 10 9 13 13 C 1.53123 * 109.28182 * 59.17780 * 12 11 10 14 14 C 1.50696 * 109.57716 * 182.41084 * 13 12 11 15 15 H 1.07997 * 119.99878 * 119.72167 * 14 13 12 16 16 C 1.37871 * 120.00268 * 299.71257 * 14 13 12 17 17 N 1.31517 * 120.00433 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99926 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99929 * 18 16 14 20 20 H 1.48493 * 109.47177 * 209.99535 * 18 16 14 21 21 H 1.48498 * 109.47178 * 329.99984 * 18 16 14 22 22 C 1.53120 * 109.16070 * 302.35293 * 13 12 11 23 23 C 1.46849 * 110.99649 * 169.99608 * 10 9 7 24 24 H 1.08992 * 109.47514 * 59.99642 * 1 2 3 25 25 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46652 * 299.99731 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00269 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00358 * 2 1 3 29 29 H 0.97004 * 119.99396 * 0.02562 * 3 2 1 30 30 H 0.96995 * 120.00326 * 359.97438 * 6 4 3 31 31 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 32 32 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 33 33 H 1.09006 * 109.46266 * 294.17473 * 11 10 9 34 34 H 1.09002 * 109.46276 * 54.14664 * 11 10 9 35 35 H 1.09006 * 109.50444 * 299.24199 * 12 11 10 36 36 H 1.09003 * 109.50687 * 179.12283 * 12 11 10 37 37 H 1.09005 * 109.51783 * 62.25186 * 13 12 11 38 38 H 0.96996 * 120.00257 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.50142 * 297.71204 * 22 13 12 40 40 H 1.08998 * 109.50777 * 177.59101 * 22 13 12 41 41 H 1.08991 * 109.46839 * 305.85721 * 23 10 9 42 42 H 1.09005 * 109.46224 * 65.84006 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1332 0.7038 -0.0015 6 7 3.7926 2.8982 0.0000 7 6 5.1177 3.1445 -0.0010 8 8 5.9055 2.2230 -0.0020 9 6 5.6200 4.5653 0.0001 10 7 7.0890 4.5653 -0.0007 11 6 7.6160 4.0018 1.2487 12 6 9.1388 3.8832 1.1540 13 6 9.7394 5.2694 0.9040 14 6 11.2340 5.1519 0.7507 15 1 11.7086 5.4631 -0.1681 16 6 11.9954 4.6474 1.7834 17 7 13.2998 4.5454 1.6498 18 14 11.1744 4.1088 3.3726 19 1 10.8028 2.6742 3.2762 20 1 12.1148 4.3014 4.5056 21 1 9.9530 4.9224 3.5992 22 6 9.1379 5.8542 -0.3769 23 6 7.6151 5.9156 -0.2378 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3880 2.1185 0.0004 30 1 3.1623 3.6355 0.0004 31 1 5.2558 5.0801 -0.8889 32 1 5.2576 5.0781 0.8911 33 1 7.3538 4.6553 2.0808 34 1 7.1843 3.0144 1.4123 35 1 9.4016 3.2190 0.3306 36 1 9.5312 3.4795 2.0874 37 1 9.5098 5.9229 1.7457 38 1 13.8354 4.1902 2.3763 39 1 9.4006 5.2209 -1.2243 40 1 9.5295 6.8587 -0.5373 41 1 7.1828 6.3183 -1.1537 42 1 7.3530 6.5600 0.6014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541948069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:23 Heat of formation + Delta-G solvation = -86.055551 kcal Electronic energy + Delta-G solvation = -22656.190409 eV Core-core repulsion = 19249.365640 eV Total energy + Delta-G solvation = -3406.824769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23469 -40.31337 -39.05395 -36.35070 -35.68819 -35.68453 -33.67535 -31.70179 -31.41403 -29.53392 -26.87346 -24.51466 -24.10068 -23.24441 -22.47643 -21.55791 -20.48940 -19.89609 -18.84157 -18.18426 -17.35435 -17.20726 -16.62919 -16.24146 -16.12535 -15.72999 -15.49520 -15.35735 -14.99096 -14.84315 -14.73633 -14.39480 -13.82925 -13.41756 -13.31617 -13.21833 -12.94592 -12.69136 -12.61740 -12.39968 -12.22261 -12.11494 -12.03125 -11.68442 -11.41092 -11.22907 -11.03518 -10.87920 -10.69575 -10.50332 -10.17257 -9.20348 -8.30887 -6.32879 1.05819 1.29200 1.29701 1.30302 1.41525 2.23102 2.30514 2.79355 3.04833 3.10003 3.73003 4.07272 4.10328 4.15864 4.19963 4.22393 4.34792 4.41743 4.50921 4.52341 4.65708 4.76088 4.79910 4.86787 4.94096 4.99347 5.06883 5.11294 5.18993 5.25996 5.28958 5.36555 5.55124 5.56618 5.68227 5.78606 6.09321 6.22424 6.33320 6.62900 6.74667 7.17951 7.32116 7.36400 8.86346 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.003435 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.954399 B = 8149.118711 C = 8696.281392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 N -0.716 5.716 4 C 0.685 3.315 5 O -0.596 6.596 6 N -0.671 5.671 7 C 0.510 3.490 8 O -0.508 6.508 9 C 0.045 3.955 10 N -0.546 5.546 11 C 0.063 3.937 12 C -0.112 4.112 13 C 0.012 3.988 14 C -0.515 4.515 15 H 0.033 0.967 16 C 0.008 3.992 17 N -0.952 5.952 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.241 1.241 22 C -0.096 4.096 23 C 0.069 3.931 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.420 0.580 30 H 0.436 0.564 31 H 0.153 0.847 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.031 0.969 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.540 1.350 -2.295 34.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 N -0.375 5.375 4 C 0.385 3.615 5 O -0.472 6.472 6 N -0.340 5.340 7 C 0.297 3.703 8 O -0.378 6.378 9 C -0.085 4.085 10 N -0.271 5.271 11 C -0.065 4.065 12 C -0.149 4.149 13 C -0.007 4.007 14 C -0.553 4.553 15 H 0.052 0.948 16 C -0.188 4.188 17 N -0.593 5.593 18 Si 0.776 3.224 19 H -0.207 1.207 20 H -0.223 1.223 21 H -0.165 1.165 22 C -0.134 4.134 23 C -0.057 4.057 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.258 0.742 30 H 0.276 0.724 31 H 0.171 0.829 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -33.045 -0.383 -2.608 33.150 hybrid contribution 0.049 0.279 1.298 1.329 sum -32.996 -0.104 -1.309 33.022 Atomic orbital electron populations 1.21948 0.90908 1.04382 1.03724 1.21337 0.96477 0.80890 1.01328 1.45163 1.03656 1.10700 1.78023 1.16528 0.83893 0.83157 0.77924 1.91067 1.56385 1.44597 1.55162 1.43901 1.09433 1.08632 1.72038 1.21644 0.81007 0.93175 0.74462 1.90848 1.55642 1.47994 1.43280 1.22143 0.88634 0.90586 1.07140 1.61438 1.06194 1.23680 1.35818 1.22070 0.94932 0.99452 0.90015 1.21829 0.94535 0.99693 0.98885 1.19186 0.92971 0.92593 0.95945 1.21459 0.92337 1.40836 1.00648 0.94826 1.25892 0.95144 0.95547 1.02213 1.70052 1.06569 1.48346 1.34337 0.85837 0.78707 0.79001 0.78830 1.20698 1.22302 1.16493 1.21428 0.94649 1.00100 0.97223 1.22151 0.94428 0.86993 1.02147 0.90606 0.89796 0.90690 0.92886 0.92996 0.74179 0.72428 0.82947 0.87838 0.94232 0.91587 0.94135 0.95066 0.95550 0.92693 0.93871 0.91535 0.87508 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.03 71.98 0.72 0.09 16 2 C 0.12 1.57 6.39 86.38 0.55 2.13 16 3 N -0.72 -8.77 5.56 -478.61 -2.66 -11.43 16 4 C 0.68 15.82 8.50 179.06 1.52 17.34 16 5 O -0.60 -22.44 14.74 18.94 0.28 -22.16 16 6 N -0.67 -10.92 5.24 -440.53 -2.31 -13.23 16 7 C 0.51 13.04 7.44 87.66 0.65 13.70 16 8 O -0.51 -20.57 12.72 19.89 0.25 -20.32 16 9 C 0.05 0.83 5.45 85.56 0.47 1.30 16 10 N -0.55 -16.67 4.40 -900.93 -3.96 -20.63 16 11 C 0.06 2.36 5.10 86.33 0.44 2.80 16 12 C -0.11 -5.26 4.84 30.65 0.15 -5.11 16 13 C 0.01 0.57 1.75 -11.46 -0.02 0.55 16 14 C -0.51 -30.84 9.15 25.60 0.23 -30.61 16 15 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 16 C 0.01 0.52 5.45 84.65 0.46 0.98 16 17 N -0.95 -62.56 13.96 21.45 0.30 -62.26 16 18 Si 0.95 48.19 24.36 68.60 1.67 49.86 16 19 H -0.28 -14.23 6.89 99.48 0.69 -13.54 16 20 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 21 H -0.24 -11.11 6.53 99.48 0.65 -10.46 16 22 C -0.10 -3.75 5.32 30.65 0.16 -3.58 16 23 C 0.07 1.90 5.46 86.33 0.47 2.37 16 24 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.08 0.28 8.14 -2.38 -0.02 0.27 16 26 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.42 1.19 8.49 -92.71 -0.79 0.41 16 30 H 0.44 1.50 8.71 -92.71 -0.81 0.69 16 31 H 0.15 1.47 7.99 -2.39 -0.02 1.45 16 32 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 33 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 2.68 5.78 -2.39 -0.01 2.66 16 35 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.03 1.54 3.38 -2.39 -0.01 1.54 16 37 H 0.03 1.25 7.19 -2.38 -0.02 1.23 16 38 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.11 2.13 8.01 -2.39 -0.02 2.11 16 42 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -94.91 331.80 -1.25 -96.16 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -0.64 Total: 2.05 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.81 Total: 1.95 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -8.63 Total: -107.54 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: 0.53 Total: -42.48 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.67 Total: 49.86 kcal Total: -94.91 -1.25 -96.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541948069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.106 kcal (2) G-P(sol) polarization free energy of solvation -94.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds