Wall clock time and date at job start Tue Mar 31 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99768 * 2 1 4 4 C 1.53003 * 109.47108 * 270.00331 * 3 2 1 5 5 C 1.52997 * 109.46966 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47120 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99972 * 180.02562 * 2 1 3 8 8 O 1.21348 * 119.99829 * 183.24586 * 7 2 1 9 9 C 1.49452 * 120.00195 * 3.23900 * 7 2 1 10 10 O 1.21350 * 119.99681 * 353.88675 * 9 7 2 11 11 N 1.34771 * 120.00231 * 173.60943 * 9 7 2 12 12 C 1.46499 * 120.00220 * 185.01737 * 11 9 7 13 13 C 1.53000 * 109.47019 * 184.96668 * 12 11 9 14 14 C 1.50700 * 115.55231 * 305.47144 * 13 12 11 15 15 H 1.08002 * 120.00231 * 149.46650 * 14 13 12 16 16 C 1.37876 * 119.99809 * 329.45879 * 14 13 12 17 17 N 1.31516 * 120.00035 * 4.73435 * 16 14 13 18 18 Si 1.86801 * 120.00306 * 184.72920 * 16 14 13 19 19 H 1.48501 * 109.46811 * 60.00133 * 18 16 14 20 20 H 1.48499 * 109.47340 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46829 * 300.00436 * 18 16 14 22 22 C 1.53000 * 117.49933 * 159.79518 * 13 12 11 23 23 C 1.53000 * 117.49655 * 91.13598 * 13 12 11 24 24 H 1.09002 * 109.46655 * 264.11021 * 1 2 3 25 25 H 1.08996 * 109.47231 * 24.11084 * 1 2 3 26 26 H 1.09000 * 109.46869 * 144.11283 * 1 2 3 27 27 H 1.08997 * 109.46898 * 30.00391 * 3 2 1 28 28 H 1.08999 * 109.46806 * 150.00328 * 3 2 1 29 29 H 1.09001 * 109.46660 * 300.00167 * 4 3 2 30 30 H 1.09002 * 109.47222 * 59.99770 * 4 3 2 31 31 H 1.09001 * 109.47338 * 299.99472 * 5 4 3 32 32 H 1.08999 * 109.47106 * 59.99899 * 5 4 3 33 33 H 1.00894 * 111.00330 * 56.04055 * 6 5 4 34 34 H 1.00902 * 111.00444 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99476 * 5.00933 * 11 9 7 36 36 H 1.08997 * 109.46629 * 304.96494 * 12 11 9 37 37 H 1.08996 * 109.46860 * 64.96739 * 12 11 9 38 38 H 0.97000 * 120.00498 * 184.99669 * 17 16 14 39 39 H 1.08998 * 117.49396 * 0.02562 * 22 13 12 40 40 H 1.08997 * 117.50045 * 145.02268 * 22 13 12 41 41 H 1.09005 * 117.49924 * 214.97483 * 23 13 12 42 42 H 1.09002 * 117.50017 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4621 3.4596 -2.8275 7 6 2.1390 -1.1672 -0.0005 8 8 3.3510 -1.1681 0.0590 9 6 1.3935 -2.4605 -0.0742 10 8 0.1812 -2.4658 -0.0217 11 7 2.0675 -3.6203 -0.2047 12 6 1.3357 -4.8762 -0.3873 13 6 2.3217 -6.0461 -0.3842 14 6 3.4524 -5.9458 -1.3754 15 1 4.4089 -6.3942 -1.1507 16 6 3.2658 -5.2817 -2.5692 17 7 2.1328 -4.6564 -2.8037 18 14 4.6221 -5.2699 -3.8536 19 1 4.9284 -6.6642 -4.2628 20 1 4.1760 -4.4927 -5.0377 21 1 5.8406 -4.6431 -3.2810 22 6 1.7638 -7.4395 -0.0876 23 6 2.6169 -6.7176 0.9585 24 1 -0.3633 -0.1055 1.0223 25 1 -0.3633 0.9380 -0.4198 26 1 -0.3633 -0.8326 -0.6024 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.5000 1.8408 -1.9563 31 1 2.6292 3.7950 -0.9286 32 1 4.1703 2.9044 -0.9288 33 1 2.5975 3.5256 -3.3433 34 1 3.9672 4.3328 -2.8544 35 1 3.0371 -3.6234 -0.1777 36 1 0.6206 -5.0015 0.4257 37 1 0.8039 -4.8517 -1.3384 38 1 1.9728 -4.2511 -3.6703 39 1 0.6941 -7.5227 0.1049 40 1 2.2147 -8.2837 -0.6091 41 1 3.6287 -7.0873 1.1247 42 1 2.1089 -6.3257 1.8397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566507857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:07 Heat of formation + Delta-G solvation = -34.559764 kcal Electronic energy + Delta-G solvation = -23026.583223 eV Core-core repulsion = 19621.991479 eV Total energy + Delta-G solvation = -3404.591744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17061 -38.05800 -36.69576 -36.40728 -34.91838 -33.00034 -32.16645 -30.73831 -26.94145 -26.52670 -25.65616 -24.91347 -22.26244 -21.33939 -21.11401 -19.40532 -18.99443 -17.35135 -16.56095 -16.26347 -16.13938 -15.51044 -15.30372 -14.95001 -14.77658 -14.29155 -14.06156 -13.71475 -13.62708 -13.07554 -12.75016 -12.61409 -12.40783 -12.09225 -12.02694 -11.78409 -11.62649 -11.39847 -11.03863 -10.84929 -10.77995 -10.65806 -10.51149 -10.26471 -9.69175 -9.06276 -8.93422 -8.92277 -8.72456 -8.49232 -8.31409 -7.92153 -6.03572 -4.21911 2.11513 2.85637 3.27121 3.33733 3.35374 3.92082 4.13914 4.31300 4.38157 4.79326 4.89145 4.98308 5.19493 5.23436 5.34027 5.37569 5.47881 5.48838 5.59880 5.83648 5.98289 6.01362 6.14140 6.25878 6.27419 6.50178 6.59406 6.61580 6.66262 6.84549 6.89247 7.02576 7.18972 7.23216 7.30615 7.46988 7.57084 7.89363 8.08120 8.26909 8.50546 8.79245 8.95367 9.41147 10.84984 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.005124 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.949512 B = 5463.171516 C = 6636.622399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.596 5.596 3 C 0.116 3.884 4 C -0.136 4.136 5 C 0.066 3.934 6 N -0.852 5.852 7 C 0.508 3.492 8 O -0.522 6.522 9 C 0.496 3.504 10 O -0.549 6.549 11 N -0.635 5.635 12 C 0.168 3.832 13 C 0.032 3.968 14 C -0.495 4.495 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.873 5.873 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.199 4.199 23 C -0.212 4.212 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.340 0.660 34 H 0.341 0.659 35 H 0.412 0.588 36 H 0.027 0.973 37 H 0.117 0.883 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 13.180 3.639 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C -0.008 4.008 4 C -0.175 4.175 5 C -0.065 4.065 6 N -0.381 5.381 7 C 0.291 3.709 8 O -0.398 6.398 9 C 0.275 3.725 10 O -0.430 6.430 11 N -0.281 5.281 12 C 0.045 3.955 13 C 0.031 3.969 14 C -0.532 4.532 15 H 0.081 0.919 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.237 4.237 23 C -0.250 4.250 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.248 0.752 36 H 0.046 0.954 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.498 12.626 3.505 13.339 hybrid contribution 0.487 0.831 -0.497 1.083 sum -2.011 13.457 3.009 13.935 Atomic orbital electron populations 1.22356 0.77874 1.03792 1.03211 1.47657 1.08062 1.04968 1.72336 1.21441 0.98068 0.84532 0.96734 1.21960 1.00618 0.97612 0.97334 1.21694 0.99897 0.95442 0.89485 1.58625 1.27395 1.38038 1.14066 1.20681 0.87587 0.85631 0.76996 1.90721 1.13729 1.87389 1.47920 1.19656 0.87501 0.85056 0.80252 1.90551 1.13466 1.86506 1.52509 1.45518 1.11693 1.05697 1.65199 1.21218 0.92677 0.80109 1.01472 1.19245 0.96255 0.88931 0.92421 1.20530 0.96677 1.34832 1.01134 0.91944 1.25002 0.96022 0.93648 0.98373 1.69901 1.23850 1.34451 1.22760 0.86574 0.82137 0.78123 0.80815 1.20196 1.21166 1.19919 1.22963 0.96882 0.99298 1.04589 1.22980 0.99630 1.08562 0.93802 0.92653 0.92510 0.87011 0.90570 0.89584 0.90314 0.91910 0.95642 0.90730 0.84748 0.84706 0.75228 0.95440 0.86528 0.92611 0.91358 0.90132 0.90506 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 9.54 59.85 0.57 1.52 16 2 N -0.60 -9.22 2.87 -182.08 -0.52 -9.75 16 3 C 0.12 1.43 5.41 -4.04 -0.02 1.41 16 4 C -0.14 -1.64 5.80 -26.73 -0.15 -1.80 16 5 C 0.07 0.65 6.79 -3.83 -0.03 0.62 16 6 N -0.85 -8.17 9.62 -10.37 -0.10 -8.27 16 7 C 0.51 9.88 7.74 -11.58 -0.09 9.79 16 8 O -0.52 -11.19 16.05 5.50 0.09 -11.10 16 9 C 0.50 10.59 7.77 -11.59 -0.09 10.50 16 10 O -0.55 -11.92 13.13 5.50 0.07 -11.85 16 11 N -0.63 -14.39 4.67 -60.73 -0.28 -14.68 16 12 C 0.17 3.93 4.58 -4.04 -0.02 3.91 16 13 C 0.03 0.76 2.13 -155.66 -0.33 0.43 16 14 C -0.49 -12.69 8.36 -34.44 -0.29 -12.98 16 15 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 16 C 0.07 1.89 5.26 -17.82 -0.09 1.80 16 17 N -0.87 -22.95 9.65 55.43 0.53 -22.42 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.20 -4.25 9.96 -26.69 -0.27 -4.52 16 23 C -0.21 -4.44 9.92 -26.69 -0.26 -4.71 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.59 8.03 -51.93 -0.42 0.18 16 26 H 0.11 1.82 5.38 -51.93 -0.28 1.54 16 27 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.09 1.15 7.38 -51.93 -0.38 0.76 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.34 2.86 8.99 -39.29 -0.35 2.51 16 34 H 0.34 2.53 9.08 -39.29 -0.36 2.18 16 35 H 0.41 9.68 7.43 -40.82 -0.30 9.37 16 36 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 37 H 0.12 3.04 5.98 -51.93 -0.31 2.73 16 38 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -28.41 347.91 -7.66 -36.07 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -6.59 Total: 15.15 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.07 Total: 5.95 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.37 Total: -55.11 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.16 Total: -22.95 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.41 -7.66 -36.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566507857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.509 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds