Wall clock time and date at job start Tue Mar 31 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99768 * 2 1 4 4 C 1.53003 * 109.47108 * 270.00331 * 3 2 1 5 5 C 1.52997 * 109.46966 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47120 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99972 * 180.02562 * 2 1 3 8 8 O 1.21348 * 119.99829 * 183.24586 * 7 2 1 9 9 C 1.49452 * 120.00195 * 3.23900 * 7 2 1 10 10 O 1.21350 * 119.99681 * 353.88675 * 9 7 2 11 11 N 1.34771 * 120.00231 * 173.60943 * 9 7 2 12 12 C 1.46499 * 120.00220 * 185.01737 * 11 9 7 13 13 C 1.53000 * 109.47019 * 184.96668 * 12 11 9 14 14 C 1.50700 * 115.55231 * 305.47144 * 13 12 11 15 15 H 1.08002 * 120.00231 * 149.46650 * 14 13 12 16 16 C 1.37876 * 119.99809 * 329.45879 * 14 13 12 17 17 N 1.31516 * 120.00035 * 4.73435 * 16 14 13 18 18 Si 1.86801 * 120.00306 * 184.72920 * 16 14 13 19 19 H 1.48501 * 109.46811 * 60.00133 * 18 16 14 20 20 H 1.48499 * 109.47340 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46829 * 300.00436 * 18 16 14 22 22 C 1.53000 * 117.49933 * 159.79518 * 13 12 11 23 23 C 1.53000 * 117.49655 * 91.13598 * 13 12 11 24 24 H 1.09002 * 109.46655 * 264.11021 * 1 2 3 25 25 H 1.08996 * 109.47231 * 24.11084 * 1 2 3 26 26 H 1.09000 * 109.46869 * 144.11283 * 1 2 3 27 27 H 1.08997 * 109.46898 * 30.00391 * 3 2 1 28 28 H 1.08999 * 109.46806 * 150.00328 * 3 2 1 29 29 H 1.09001 * 109.46660 * 300.00167 * 4 3 2 30 30 H 1.09002 * 109.47222 * 59.99770 * 4 3 2 31 31 H 1.09001 * 109.47338 * 299.99472 * 5 4 3 32 32 H 1.08999 * 109.47106 * 59.99899 * 5 4 3 33 33 H 1.00894 * 111.00330 * 56.04055 * 6 5 4 34 34 H 1.00902 * 111.00444 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99476 * 5.00933 * 11 9 7 36 36 H 1.08997 * 109.46629 * 304.96494 * 12 11 9 37 37 H 1.08996 * 109.46860 * 64.96739 * 12 11 9 38 38 H 0.97000 * 120.00498 * 184.99669 * 17 16 14 39 39 H 1.08998 * 117.49396 * 0.02562 * 22 13 12 40 40 H 1.08997 * 117.50045 * 145.02268 * 22 13 12 41 41 H 1.09005 * 117.49924 * 214.97483 * 23 13 12 42 42 H 1.09002 * 117.50017 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4621 3.4596 -2.8275 7 6 2.1390 -1.1672 -0.0005 8 8 3.3510 -1.1681 0.0590 9 6 1.3935 -2.4605 -0.0742 10 8 0.1812 -2.4658 -0.0217 11 7 2.0675 -3.6203 -0.2047 12 6 1.3357 -4.8762 -0.3873 13 6 2.3217 -6.0461 -0.3842 14 6 3.4524 -5.9458 -1.3754 15 1 4.4089 -6.3942 -1.1507 16 6 3.2658 -5.2817 -2.5692 17 7 2.1328 -4.6564 -2.8037 18 14 4.6221 -5.2699 -3.8536 19 1 4.9284 -6.6642 -4.2628 20 1 4.1760 -4.4927 -5.0377 21 1 5.8406 -4.6431 -3.2810 22 6 1.7638 -7.4395 -0.0876 23 6 2.6169 -6.7176 0.9585 24 1 -0.3633 -0.1055 1.0223 25 1 -0.3633 0.9380 -0.4198 26 1 -0.3633 -0.8326 -0.6024 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.5000 1.8408 -1.9563 31 1 2.6292 3.7950 -0.9286 32 1 4.1703 2.9044 -0.9288 33 1 2.5975 3.5256 -3.3433 34 1 3.9672 4.3328 -2.8544 35 1 3.0371 -3.6234 -0.1777 36 1 0.6206 -5.0015 0.4257 37 1 0.8039 -4.8517 -1.3384 38 1 1.9728 -4.2511 -3.6703 39 1 0.6941 -7.5227 0.1049 40 1 2.2147 -8.2837 -0.6091 41 1 3.6287 -7.0873 1.1247 42 1 2.1089 -6.3257 1.8397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566507857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:06 Heat of formation + Delta-G solvation = -54.764431 kcal Electronic energy + Delta-G solvation = -23027.459363 eV Core-core repulsion = 19621.991479 eV Total energy + Delta-G solvation = -3405.467885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69301 -39.66545 -38.44757 -37.59199 -35.98356 -34.70651 -34.09637 -31.72558 -28.56925 -27.75506 -27.51416 -26.26165 -23.52989 -22.93310 -22.27956 -21.20304 -20.59159 -18.93455 -18.07559 -17.86613 -17.27489 -16.82140 -16.68378 -16.50904 -16.27428 -15.82232 -15.29220 -15.19466 -14.96158 -14.61853 -14.37226 -14.02507 -13.65318 -13.50798 -13.32571 -13.19049 -13.02278 -12.89042 -12.64589 -12.55348 -12.30223 -12.18441 -12.04667 -11.79269 -11.51609 -10.93687 -10.74481 -10.31089 -10.13406 -9.90652 -9.64858 -9.61301 -7.98919 -6.21631 0.52541 1.40949 1.44874 1.47360 1.49732 2.31801 2.39818 2.67967 3.03034 3.54132 3.60098 3.70022 3.91180 4.09158 4.24355 4.30712 4.40070 4.42241 4.51089 4.55329 4.67480 4.72550 4.77746 4.79855 4.96837 5.02877 5.07601 5.11390 5.19470 5.28143 5.42702 5.52172 5.59137 5.73948 5.92808 5.98479 6.22575 6.34072 6.51032 6.59083 6.77684 6.90697 7.22023 7.41852 8.86217 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.005124 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.949512 B = 5463.171516 C = 6636.622399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.583 5.583 3 C 0.113 3.887 4 C -0.129 4.129 5 C 0.071 3.929 6 N -0.868 5.868 7 C 0.503 3.497 8 O -0.551 6.551 9 C 0.490 3.510 10 O -0.555 6.555 11 N -0.643 5.643 12 C 0.180 3.820 13 C 0.000 4.000 14 C -0.505 4.505 15 H 0.055 0.945 16 C 0.037 3.963 17 N -0.888 5.888 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.191 4.191 23 C -0.193 4.193 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.347 0.653 34 H 0.353 0.647 35 H 0.405 0.595 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.258 0.742 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 14.725 4.346 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.316 5.316 3 C -0.009 4.009 4 C -0.168 4.168 5 C -0.060 4.060 6 N -0.400 5.400 7 C 0.286 3.714 8 O -0.430 6.430 9 C 0.271 3.729 10 O -0.437 6.437 11 N -0.288 5.288 12 C 0.057 3.943 13 C 0.000 4.000 14 C -0.543 4.543 15 H 0.074 0.926 16 C -0.164 4.164 17 N -0.526 5.526 18 Si 0.770 3.230 19 H -0.196 1.196 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.229 4.229 23 C -0.230 4.230 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.240 0.760 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.030 14.201 4.216 15.121 hybrid contribution 0.582 0.397 -0.698 0.992 sum -2.448 14.599 3.518 15.215 Atomic orbital electron populations 1.22410 0.76424 1.04802 1.03634 1.47807 1.09064 1.04800 1.69927 1.21729 0.98157 0.83729 0.97311 1.21866 1.00664 0.97649 0.96595 1.21614 0.99685 0.94761 0.89938 1.58585 1.28180 1.39108 1.14170 1.20371 0.87200 0.86107 0.77736 1.90703 1.14604 1.87724 1.49934 1.20101 0.87604 0.85637 0.79558 1.90554 1.13726 1.86896 1.52490 1.45521 1.11270 1.06080 1.65972 1.20929 0.92602 0.80714 1.00009 1.19305 0.96586 0.90086 0.94039 1.20718 0.97063 1.34660 1.01840 0.92636 1.25520 0.97443 0.93709 0.99755 1.70052 1.24906 1.35089 1.22529 0.85828 0.80096 0.78087 0.78946 1.19589 1.21508 1.20230 1.22978 0.97907 0.97789 1.04230 1.22978 0.99972 1.06856 0.93214 0.91560 0.88416 0.89902 0.86152 0.90681 0.94687 0.90933 0.92699 0.91436 0.84009 0.83307 0.75959 0.94962 0.89393 0.93248 0.89860 0.90224 0.90087 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 9.54 127.77 1.22 2.93 16 2 N -0.58 -17.26 2.87 -848.33 -2.44 -19.70 16 3 C 0.11 2.53 5.41 86.38 0.47 2.99 16 4 C -0.13 -2.91 5.80 30.59 0.18 -2.73 16 5 C 0.07 1.23 6.79 86.30 0.59 1.82 16 6 N -0.87 -15.15 9.62 -186.72 -1.80 -16.95 16 7 C 0.50 19.70 7.74 87.27 0.68 20.38 16 8 O -0.55 -24.11 16.05 -3.24 -0.05 -24.16 16 9 C 0.49 21.27 7.77 87.27 0.68 21.95 16 10 O -0.55 -24.28 13.13 -3.25 -0.04 -24.32 16 11 N -0.64 -29.76 4.67 -464.43 -2.17 -31.93 16 12 C 0.18 8.55 4.58 86.38 0.40 8.95 16 13 C 0.00 0.02 2.13 -52.93 -0.11 -0.09 16 14 C -0.51 -26.15 8.36 25.60 0.21 -25.94 16 15 H 0.06 2.88 7.82 -2.91 -0.02 2.86 16 16 C 0.04 1.95 5.26 84.65 0.45 2.39 16 17 N -0.89 -47.76 9.65 21.45 0.21 -47.55 16 18 Si 0.94 42.91 29.54 68.60 2.03 44.93 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.19 -7.94 9.96 30.62 0.30 -7.63 16 23 C -0.19 -7.81 9.92 30.62 0.30 -7.51 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.10 1.65 8.03 -2.39 -0.02 1.63 16 26 H 0.08 2.63 5.38 -2.42 -0.01 2.62 16 27 H 0.12 1.71 8.07 -2.39 -0.02 1.69 16 28 H 0.07 1.90 7.38 -2.39 -0.02 1.89 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.35 5.17 8.99 -89.70 -0.81 4.37 16 34 H 0.35 4.57 9.08 -89.69 -0.81 3.76 16 35 H 0.41 19.63 7.43 -92.71 -0.69 18.95 16 36 H 0.03 1.46 8.05 -2.39 -0.02 1.44 16 37 H 0.09 4.70 5.98 -2.39 -0.01 4.69 16 38 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 39 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 42 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -62.12 347.91 -0.17 -62.30 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -1.26 Total: 39.89 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 5.35 Total: 17.51 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -6.20 Total: -116.14 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.09 Total: -48.49 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.12 -0.17 -62.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566507857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.531 kcal (2) G-P(sol) polarization free energy of solvation -62.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds