Wall clock time and date at job start Tue Mar 31 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46837 * 2 1 4 4 C 1.46765 * 124.35039 * 269.94972 * 3 2 1 5 5 C 1.54482 * 105.47415 * 197.04048 * 4 3 2 6 6 H 1.08996 * 110.99835 * 92.72011 * 5 4 3 7 7 N 1.46497 * 110.96713 * 216.46947 * 5 4 3 8 8 C 1.34781 * 119.99716 * 198.83541 * 7 5 4 9 9 O 1.21286 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00160 * 179.97438 * 8 7 5 11 11 H 1.09002 * 109.46753 * 39.99710 * 10 8 7 12 12 N 1.46898 * 109.47192 * 159.99754 * 10 8 7 13 13 C 1.52992 * 109.47482 * 279.99980 * 10 8 7 14 14 C 1.52997 * 109.47482 * 174.99860 * 13 10 8 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.54627 * 101.76439 * 334.58375 * 5 4 3 24 24 C 1.34418 * 124.34768 * 89.97925 * 3 2 1 25 25 O 1.21282 * 124.94333 * 359.53536 * 24 3 2 26 26 H 1.09002 * 109.47221 * 59.99948 * 1 2 3 27 27 H 1.09008 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47065 * 299.99782 * 1 2 3 29 29 H 1.09003 * 109.46691 * 239.99920 * 2 1 3 30 30 H 1.09002 * 109.47221 * 120.00052 * 2 1 3 31 31 H 1.09000 * 110.24335 * 78.03873 * 4 3 2 32 32 H 1.08996 * 110.24871 * 316.04209 * 4 3 2 33 33 H 0.96994 * 120.00502 * 18.82674 * 7 5 4 34 34 H 1.00899 * 111.00057 * 59.99855 * 12 10 8 35 35 H 1.00898 * 110.99947 * 183.96241 * 12 10 8 36 36 H 1.09002 * 109.47103 * 54.99613 * 13 10 8 37 37 H 1.08998 * 109.46862 * 295.00425 * 13 10 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.48519 * 143.47140 * 23 5 4 42 42 H 1.08996 * 110.49229 * 265.99078 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1754 3.3437 -0.7484 6 1 4.2342 3.1031 -0.8439 7 7 2.8485 4.5633 -1.4912 8 6 3.7240 5.5875 -1.5237 9 8 4.7823 5.4996 -0.9377 10 6 3.3881 6.8420 -2.2882 11 1 2.3365 7.0874 -2.1395 12 7 4.2227 7.9493 -1.8032 13 6 3.6536 6.6179 -3.7781 14 6 3.1962 7.8457 -4.5681 15 6 3.4583 7.6251 -6.0357 16 1 3.9061 6.7014 -6.3714 17 6 3.1256 8.6021 -6.9499 18 7 3.3540 8.4093 -8.2306 19 14 2.3506 10.1994 -6.3693 20 1 3.4179 11.1888 -6.0737 21 1 1.4616 10.7333 -7.4322 22 1 1.5562 9.9463 -5.1404 23 6 2.7696 3.4754 0.7378 24 6 2.2707 2.0964 1.1098 25 8 2.1197 1.6949 2.2442 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3650 2.5306 -1.6435 32 1 2.8335 1.5525 -1.9379 33 1 2.0021 4.6338 -1.9596 34 1 5.2028 7.7459 -1.9300 35 1 3.9718 8.8160 -2.2549 36 1 3.1021 5.7411 -4.1176 37 1 4.7203 6.4601 -3.9373 38 1 3.7477 8.7224 -4.2286 39 1 2.1294 8.0033 -4.4089 40 1 3.1203 9.0969 -8.8738 41 1 3.6325 3.7457 1.3464 42 1 1.9763 4.2140 0.8527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571047953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:45 Heat of formation + Delta-G solvation = -79.950666 kcal Electronic energy + Delta-G solvation = -22245.539654 eV Core-core repulsion = 18838.979612 eV Total energy + Delta-G solvation = -3406.560042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96063 -39.57256 -36.93103 -35.76378 -35.04663 -32.88340 -32.64769 -30.38275 -29.47459 -27.98559 -26.72890 -24.22320 -23.56249 -21.85253 -20.72481 -20.13890 -19.60617 -17.65916 -17.26033 -16.81667 -16.57302 -16.09152 -15.35339 -14.89953 -14.79272 -14.33486 -14.29032 -14.11098 -13.96794 -13.81058 -13.61826 -13.18620 -12.94394 -12.71622 -12.71082 -12.35823 -12.16367 -11.91664 -11.56594 -11.47073 -11.39147 -11.03824 -10.45085 -10.24253 -10.15898 -9.92095 -9.53260 -9.37011 -9.23896 -9.12404 -8.66925 -8.39904 -6.16502 -4.16433 2.30146 2.51190 2.71349 3.01104 3.21521 3.30174 3.30605 3.98440 4.15457 4.33268 4.51525 4.59699 4.70231 4.81716 4.86952 4.96766 4.98198 5.07979 5.16514 5.17655 5.32159 5.37195 5.45261 5.51040 5.57987 5.63051 5.78645 6.05550 6.16284 6.24019 6.27162 6.58764 6.73937 7.02367 7.15549 7.21753 7.45882 7.61286 7.71042 7.85847 8.24018 8.39169 8.87229 9.44693 10.96668 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.003178 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.328449 B = 8808.223404 C = 9452.306190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.097 3.903 5 C 0.140 3.860 6 H 0.110 0.890 7 N -0.726 5.726 8 C 0.530 3.470 9 O -0.530 6.530 10 C 0.072 3.928 11 H 0.098 0.902 12 N -0.831 5.831 13 C -0.129 4.129 14 C -0.011 4.011 15 C -0.525 4.525 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.168 4.168 24 C 0.522 3.478 25 O -0.531 6.531 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.405 0.595 34 H 0.349 0.651 35 H 0.351 0.649 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.011 0.989 39 H 0.018 0.982 40 H 0.264 0.736 41 H 0.108 0.892 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -13.228 13.894 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.026 4.026 5 C 0.033 3.967 6 H 0.128 0.872 7 N -0.380 5.380 8 C 0.317 3.683 9 O -0.404 6.404 10 C -0.043 4.043 11 H 0.116 0.884 12 N -0.363 5.363 13 C -0.169 4.169 14 C -0.048 4.048 15 C -0.563 4.563 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.209 4.209 24 C 0.310 3.690 25 O -0.407 6.407 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.240 0.760 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.977 -13.639 15.459 21.208 hybrid contribution -0.596 0.951 -1.301 1.718 sum -5.573 -12.688 14.158 19.812 Atomic orbital electron populations 1.22168 0.95639 1.02477 1.02584 1.21379 0.94497 0.80830 1.03326 1.48328 1.66247 1.13962 1.06940 1.22311 0.99841 0.92791 0.87690 1.21645 1.00699 0.84373 0.89968 0.87172 1.45924 1.22224 1.15430 1.54447 1.20858 0.83418 0.84377 0.79660 1.90666 1.24194 1.81235 1.44313 1.21517 0.99449 0.89444 0.93900 0.88395 1.58726 1.08940 1.04307 1.64340 1.22207 1.01964 1.01477 0.91273 1.19574 0.96159 0.92758 0.96315 1.21058 1.41682 1.04332 0.89237 0.91062 1.25048 0.95139 0.98483 0.94772 1.69909 1.47966 1.34729 1.01268 0.86767 0.79777 0.83883 0.78764 1.20202 1.21327 1.18963 1.22856 1.04326 0.95677 0.98072 1.20884 0.76407 0.87380 0.84331 1.90724 1.53583 1.75240 1.21128 0.92252 0.91319 0.92222 0.90114 0.89910 0.90237 0.89160 0.75978 0.83777 0.83370 0.91813 0.91997 0.97037 0.96328 0.92587 0.87319 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.12 0.85 6.65 -4.04 -0.03 0.82 16 3 N -0.62 -5.31 2.93 -172.41 -0.51 -5.82 16 4 C 0.10 0.66 7.07 -3.12 -0.02 0.63 16 5 C 0.14 1.25 3.43 -66.30 -0.23 1.03 16 6 H 0.11 1.13 7.72 -51.93 -0.40 0.72 16 7 N -0.73 -7.13 5.18 -52.23 -0.27 -7.40 16 8 C 0.53 7.30 7.08 -10.98 -0.08 7.22 16 9 O -0.53 -8.99 15.99 5.55 0.09 -8.90 16 10 C 0.07 1.03 3.21 -68.87 -0.22 0.81 16 11 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 12 N -0.83 -12.38 8.94 -5.66 -0.05 -12.43 16 13 C -0.13 -2.22 4.78 -26.74 -0.13 -2.34 16 14 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 15 C -0.53 -14.02 9.66 -34.44 -0.33 -14.36 16 16 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 17 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 19 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 23 C -0.17 -1.67 6.59 -26.74 -0.18 -1.85 16 24 C 0.52 5.95 8.02 -10.86 -0.09 5.86 16 25 O -0.53 -8.08 17.60 5.56 0.10 -7.98 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 31 H 0.08 0.43 7.77 -51.93 -0.40 0.03 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.40 3.05 8.37 -40.82 -0.34 2.71 16 34 H 0.35 5.33 8.58 -39.29 -0.34 4.99 16 35 H 0.35 5.09 7.55 -39.29 -0.30 4.80 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -33.85 347.89 -7.12 -40.97 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.70 Total: 7.93 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.12 Total: -1.45 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.05 Total: -51.63 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.19 Total: -16.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.85 -7.12 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571047953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.981 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds