Wall clock time and date at job start Tue Mar 31 2020 02:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46837 * 2 1 4 4 C 1.46765 * 124.35039 * 269.94972 * 3 2 1 5 5 C 1.54482 * 105.47415 * 197.04048 * 4 3 2 6 6 H 1.08996 * 110.99835 * 92.72011 * 5 4 3 7 7 N 1.46497 * 110.96713 * 216.46947 * 5 4 3 8 8 C 1.34781 * 119.99716 * 198.83541 * 7 5 4 9 9 O 1.21286 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00160 * 179.97438 * 8 7 5 11 11 H 1.09002 * 109.46753 * 39.99710 * 10 8 7 12 12 N 1.46898 * 109.47192 * 159.99754 * 10 8 7 13 13 C 1.52992 * 109.47482 * 279.99980 * 10 8 7 14 14 C 1.52997 * 109.47482 * 174.99860 * 13 10 8 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.54627 * 101.76439 * 334.58375 * 5 4 3 24 24 C 1.34418 * 124.34768 * 89.97925 * 3 2 1 25 25 O 1.21282 * 124.94333 * 359.53536 * 24 3 2 26 26 H 1.09002 * 109.47221 * 59.99948 * 1 2 3 27 27 H 1.09008 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47065 * 299.99782 * 1 2 3 29 29 H 1.09003 * 109.46691 * 239.99920 * 2 1 3 30 30 H 1.09002 * 109.47221 * 120.00052 * 2 1 3 31 31 H 1.09000 * 110.24335 * 78.03873 * 4 3 2 32 32 H 1.08996 * 110.24871 * 316.04209 * 4 3 2 33 33 H 0.96994 * 120.00502 * 18.82674 * 7 5 4 34 34 H 1.00899 * 111.00057 * 59.99855 * 12 10 8 35 35 H 1.00898 * 110.99947 * 183.96241 * 12 10 8 36 36 H 1.09002 * 109.47103 * 54.99613 * 13 10 8 37 37 H 1.08998 * 109.46862 * 295.00425 * 13 10 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 13 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 13 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.48519 * 143.47140 * 23 5 4 42 42 H 1.08996 * 110.49229 * 265.99078 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1754 3.3437 -0.7484 6 1 4.2342 3.1031 -0.8439 7 7 2.8485 4.5633 -1.4912 8 6 3.7240 5.5875 -1.5237 9 8 4.7823 5.4996 -0.9377 10 6 3.3881 6.8420 -2.2882 11 1 2.3365 7.0874 -2.1395 12 7 4.2227 7.9493 -1.8032 13 6 3.6536 6.6179 -3.7781 14 6 3.1962 7.8457 -4.5681 15 6 3.4583 7.6251 -6.0357 16 1 3.9061 6.7014 -6.3714 17 6 3.1256 8.6021 -6.9499 18 7 3.3540 8.4093 -8.2306 19 14 2.3506 10.1994 -6.3693 20 1 3.4179 11.1888 -6.0737 21 1 1.4616 10.7333 -7.4322 22 1 1.5562 9.9463 -5.1404 23 6 2.7696 3.4754 0.7378 24 6 2.2707 2.0964 1.1098 25 8 2.1197 1.6949 2.2442 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3650 2.5306 -1.6435 32 1 2.8335 1.5525 -1.9379 33 1 2.0021 4.6338 -1.9596 34 1 5.2028 7.7459 -1.9300 35 1 3.9718 8.8160 -2.2549 36 1 3.1021 5.7411 -4.1176 37 1 4.7203 6.4601 -3.9373 38 1 3.7477 8.7224 -4.2286 39 1 2.1294 8.0033 -4.4089 40 1 3.1203 9.0969 -8.8738 41 1 3.6325 3.7457 1.3464 42 1 1.9763 4.2140 0.8527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571047953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:44 Heat of formation + Delta-G solvation = -106.836619 kcal Electronic energy + Delta-G solvation = -22246.705516 eV Core-core repulsion = 18838.979612 eV Total energy + Delta-G solvation = -3407.725904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79710 -40.62776 -37.88365 -37.05219 -35.91004 -34.77718 -33.45069 -32.03379 -30.20770 -28.87589 -28.01957 -25.56834 -24.31545 -22.83958 -22.02800 -21.31343 -20.42642 -19.12559 -18.37888 -18.05992 -17.48232 -16.88405 -16.36231 -16.16908 -15.99343 -15.83392 -15.41914 -15.11744 -14.82413 -14.66348 -14.59894 -14.44368 -14.26188 -14.10392 -13.55307 -13.29800 -13.06839 -12.96766 -12.77136 -12.59939 -12.33888 -12.04672 -12.02208 -11.88247 -11.62244 -11.36234 -11.16909 -10.76960 -10.72966 -10.15881 -9.83137 -9.60840 -8.27291 -6.32249 1.41120 1.42068 1.42501 1.53158 1.60805 1.80472 2.14985 2.38511 3.08964 3.25728 3.42607 3.70462 3.77792 3.90845 3.95940 4.12448 4.16656 4.25085 4.25327 4.47619 4.52684 4.56622 4.64098 4.74364 4.78990 4.82298 4.85157 4.95792 5.01124 5.27379 5.39893 5.42940 5.51953 5.52780 5.66365 5.98774 6.11120 6.28432 6.51323 6.54034 6.77170 7.02515 7.24281 7.32803 8.89386 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.003178 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.328449 B = 8808.223404 C = 9452.306190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.612 5.612 4 C 0.102 3.898 5 C 0.142 3.858 6 H 0.099 0.901 7 N -0.707 5.707 8 C 0.530 3.470 9 O -0.566 6.566 10 C 0.080 3.920 11 H 0.123 0.877 12 N -0.833 5.833 13 C -0.118 4.118 14 C -0.008 4.008 15 C -0.532 4.532 16 H 0.029 0.971 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.235 1.235 23 C -0.163 4.163 24 C 0.516 3.484 25 O -0.578 6.578 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.420 0.580 34 H 0.345 0.655 35 H 0.354 0.646 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -13.015 14.423 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.346 5.346 4 C -0.020 4.020 5 C 0.036 3.964 6 H 0.117 0.883 7 N -0.361 5.361 8 C 0.317 3.683 9 O -0.443 6.443 10 C -0.035 4.035 11 H 0.140 0.860 12 N -0.365 5.365 13 C -0.158 4.158 14 C -0.045 4.045 15 C -0.570 4.570 16 H 0.047 0.953 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.775 3.225 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.157 1.157 23 C -0.204 4.204 24 C 0.305 3.695 25 O -0.458 6.458 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.258 0.742 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.729 -13.460 15.966 21.940 hybrid contribution -0.023 0.773 -1.525 1.710 sum -6.752 -12.688 14.441 20.374 Atomic orbital electron populations 1.22120 0.95014 1.03337 1.01822 1.21582 0.94987 0.79952 1.04082 1.48444 1.64879 1.14491 1.06751 1.22451 1.00710 0.91855 0.87028 1.21623 1.00733 0.84762 0.89318 0.88310 1.45720 1.22083 1.14687 1.53579 1.20753 0.83312 0.84843 0.79372 1.90663 1.25786 1.81839 1.46009 1.21469 1.00655 0.89746 0.91643 0.85955 1.58753 1.08866 1.04640 1.64259 1.22021 1.00669 1.00073 0.93052 1.19518 0.97120 0.94864 0.93035 1.21472 1.40426 1.02609 0.92489 0.95285 1.26066 0.95973 1.02779 0.94686 1.70081 1.50128 1.36318 1.02953 0.85637 0.79053 0.78627 0.79175 1.19602 1.21680 1.15746 1.22775 1.03930 0.95216 0.98476 1.21087 0.76182 0.88001 0.84263 1.90694 1.55889 1.76217 1.23047 0.91280 0.89752 0.94563 0.87189 0.91347 0.87829 0.86957 0.74175 0.84203 0.83056 0.90976 0.93994 0.96117 0.94860 0.92625 0.88758 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 10.24 71.98 0.74 -1.07 16 2 C 0.11 1.38 6.65 86.38 0.57 1.95 16 3 N -0.61 -9.31 2.93 -817.97 -2.40 -11.70 16 4 C 0.10 1.04 7.07 86.83 0.61 1.65 16 5 C 0.14 2.25 3.43 46.05 0.16 2.41 16 6 H 0.10 1.89 7.72 -2.39 -0.02 1.87 16 7 N -0.71 -11.90 5.18 -437.53 -2.27 -14.17 16 8 C 0.53 13.50 7.08 87.66 0.62 14.12 16 9 O -0.57 -18.63 15.99 -3.05 -0.05 -18.68 16 10 C 0.08 2.07 3.21 44.17 0.14 2.21 16 11 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 12 N -0.83 -23.04 8.94 -171.81 -1.54 -24.57 16 13 C -0.12 -3.83 4.78 30.59 0.15 -3.68 16 14 C -0.01 -0.32 3.81 29.85 0.11 -0.20 16 15 C -0.53 -28.44 9.66 25.60 0.25 -28.20 16 16 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 17 C 0.00 0.08 5.47 84.66 0.46 0.55 16 18 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 19 Si 0.95 41.15 27.47 68.60 1.88 43.03 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 23 C -0.16 -3.09 6.59 30.59 0.20 -2.89 16 24 C 0.52 11.50 8.02 87.90 0.71 12.21 16 25 O -0.58 -18.02 17.60 -3.04 -0.05 -18.07 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.04 7.93 -2.39 -0.02 1.03 16 31 H 0.10 0.65 7.77 -2.39 -0.02 0.63 16 32 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.42 4.66 8.37 -92.71 -0.78 3.89 16 34 H 0.34 10.13 8.58 -89.69 -0.77 9.36 16 35 H 0.35 9.31 7.55 -89.70 -0.68 8.63 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.02 0.80 6.30 -2.39 -0.02 0.78 16 39 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.12 2.03 8.08 -2.39 -0.02 2.01 16 Total: -1.00 -75.96 347.89 -0.63 -76.59 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -1.23 Total: 26.08 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.72 Total: -0.92 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -5.90 Total: -108.02 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.10 Total: -36.76 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.03 kcal Total: -75.96 -0.63 -76.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571047953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.244 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds