Wall clock time and date at job start Tue Mar 31 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47243 * 269.99988 * 3 2 1 5 5 H 1.48501 * 109.46932 * 29.99749 * 3 2 1 6 6 H 1.48499 * 109.46995 * 149.99927 * 3 2 1 7 7 C 1.37872 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00324 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99860 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.64102 * 34.29691 * 11 10 9 13 13 C 1.54597 * 110.72185 * 271.14994 * 11 10 9 14 14 C 1.54001 * 105.13879 * 219.50694 * 13 11 10 15 15 N 1.47902 * 107.05397 * 358.77124 * 14 13 11 16 16 C 1.46906 * 110.99707 * 145.84346 * 15 14 13 17 17 C 1.52999 * 109.47216 * 184.33423 * 16 15 14 18 18 N 1.46900 * 109.47326 * 185.36828 * 17 16 15 19 19 C 1.47010 * 111.00176 * 293.63864 * 18 17 16 20 20 C 1.53095 * 109.25759 * 177.60589 * 19 18 17 21 21 O 1.43012 * 109.26173 * 56.84720 * 20 19 18 22 22 C 1.43014 * 113.73698 * 301.33431 * 21 20 19 23 23 C 1.47012 * 111.00017 * 170.00073 * 18 17 16 24 24 C 1.48531 * 105.82219 * 25.33546 * 15 14 13 25 25 H 0.96997 * 119.99679 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46841 * 60.00210 * 9 7 2 27 27 H 1.09004 * 109.47362 * 300.00407 * 9 7 2 28 28 H 1.00895 * 110.99847 * 56.04913 * 10 9 7 29 29 H 1.09000 * 110.31020 * 338.42134 * 13 11 10 30 30 H 1.09001 * 110.31333 * 100.59402 * 13 11 10 31 31 H 1.08996 * 109.91916 * 118.12672 * 14 13 11 32 32 H 1.08994 * 109.91818 * 239.42353 * 14 13 11 33 33 H 1.08994 * 109.47142 * 304.33967 * 16 15 14 34 34 H 1.09002 * 109.46971 * 64.33883 * 16 15 14 35 35 H 1.08996 * 109.47041 * 305.37575 * 17 16 15 36 36 H 1.09004 * 109.47100 * 65.37239 * 17 16 15 37 37 H 1.09000 * 109.50443 * 297.54390 * 19 18 17 38 38 H 1.09003 * 109.50473 * 57.67036 * 19 18 17 39 39 H 1.08999 * 109.50915 * 296.91208 * 20 19 18 40 40 H 1.09005 * 109.54339 * 176.80550 * 20 19 18 41 41 H 1.09003 * 109.50335 * 298.72604 * 22 21 20 42 42 H 1.09003 * 109.54368 * 178.62549 * 22 21 20 43 43 H 1.09005 * 109.50924 * 302.32924 * 23 18 17 44 44 H 1.09001 * 109.50815 * 62.46024 * 23 18 17 45 45 H 1.09005 * 110.66572 * 202.35648 * 24 15 14 46 46 H 1.09004 * 110.67079 * 79.22357 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 -0.0011 12 1 0.5816 -4.8429 -0.5762 13 6 1.2185 -5.3745 1.4443 14 6 1.4710 -6.8936 1.4333 15 7 1.8474 -7.2608 0.0509 16 6 2.8285 -8.3541 0.0452 17 6 3.2737 -8.6325 -1.3919 18 7 4.1551 -9.8075 -1.4126 19 6 5.4167 -9.5322 -0.7098 20 6 6.2778 -10.7980 -0.7036 21 8 6.4913 -11.2299 -2.0502 22 6 5.2836 -11.5074 -2.7640 23 6 4.4124 -10.2489 -2.7911 24 6 2.4184 -6.0301 -0.5538 25 1 -0.4849 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8404 -3.5486 0.7808 29 1 1.8966 -4.8834 2.1423 30 1 0.1826 -5.1651 1.7112 31 1 2.2831 -7.1401 2.1172 32 1 0.5636 -7.4229 1.7240 33 1 3.6931 -8.0695 0.6448 34 1 2.3747 -9.2517 0.4652 35 1 2.3985 -8.8238 -2.0127 36 1 3.8121 -7.7676 -1.7795 37 1 5.9507 -8.7311 -1.2209 38 1 5.2037 -9.2318 0.3161 39 1 5.7670 -11.5831 -0.1463 40 1 7.2377 -10.5836 -0.2336 41 1 4.7438 -12.3132 -2.2666 42 1 5.5236 -11.8060 -3.7845 43 1 3.4663 -10.4717 -3.2846 44 1 4.9303 -9.4593 -3.3355 45 1 2.3601 -6.0731 -1.6414 46 1 3.4483 -5.8837 -0.2282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591740093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:59 Heat of formation + Delta-G solvation = -55.360474 kcal Electronic energy + Delta-G solvation = -22544.299271 eV Core-core repulsion = 19274.638634 eV Total energy + Delta-G solvation = -3269.660636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75211 -40.04985 -37.33194 -36.27963 -34.55676 -32.52823 -32.08922 -29.93924 -29.53753 -27.73236 -26.34925 -25.02173 -23.87276 -23.07415 -21.72144 -21.64613 -21.13069 -18.61779 -17.77404 -17.16573 -17.10640 -16.69985 -16.64087 -16.26376 -16.00109 -15.63685 -15.55875 -15.14076 -14.74929 -14.55921 -14.37606 -14.35540 -13.81363 -13.46914 -13.37836 -13.06207 -12.90015 -12.73277 -12.57076 -12.49078 -12.35593 -12.29007 -12.12817 -11.95141 -11.85037 -11.63454 -11.45116 -11.25624 -10.68092 -10.67582 -9.50304 -9.40511 -9.11375 -8.24118 -6.35651 1.40186 1.42022 1.53088 2.38234 2.52702 2.93336 3.09060 3.11483 3.49775 3.68195 3.85359 3.91778 3.97270 4.02993 4.06707 4.12327 4.18925 4.31512 4.33051 4.36364 4.48379 4.53656 4.59943 4.65418 4.72312 4.79776 4.80726 4.84306 4.89175 4.92965 4.96077 5.01978 5.06099 5.11016 5.16672 5.27994 5.58791 5.79031 5.85707 5.92048 6.01017 6.09015 6.17264 6.42354 6.69748 6.86959 7.35466 8.87428 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.002693 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.971049 B =10395.159499 C =10907.960857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.213 3.787 10 N -0.680 5.680 11 C 0.079 3.921 12 H 0.063 0.937 13 C -0.156 4.156 14 C 0.051 3.949 15 N -0.523 5.523 16 C 0.061 3.939 17 C 0.064 3.936 18 N -0.538 5.538 19 C 0.013 3.987 20 C 0.064 3.936 21 O -0.408 6.408 22 C 0.064 3.936 23 C 0.016 3.984 24 C 0.062 3.938 25 H 0.265 0.735 26 H -0.003 1.003 27 H -0.036 1.036 28 H 0.335 0.665 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.026 0.974 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 -23.873 -0.373 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.310 5.310 11 C -0.032 4.032 12 H 0.081 0.919 13 C -0.196 4.196 14 C -0.077 4.077 15 N -0.249 5.249 16 C -0.068 4.068 17 C -0.064 4.064 18 N -0.264 5.264 19 C -0.115 4.115 20 C -0.013 4.013 21 O -0.327 6.327 22 C -0.013 4.013 23 C -0.112 4.112 24 C -0.067 4.067 25 H 0.074 0.926 26 H 0.015 0.985 27 H -0.018 1.018 28 H 0.153 0.847 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.948 -24.347 -1.191 25.966 hybrid contribution 0.387 2.156 0.968 2.395 sum 9.335 -22.191 -0.223 24.075 Atomic orbital electron populations 1.70093 1.07811 1.28036 1.51433 1.25958 0.95791 1.03406 0.94552 0.85328 0.78532 0.77952 0.78453 1.19906 1.20636 1.18683 1.21550 0.93797 0.91476 1.50718 0.91778 1.19165 0.90510 0.88623 0.93157 1.60488 1.20113 1.01171 1.49217 1.22469 0.96303 0.89351 0.95096 0.91863 1.23093 1.02021 0.96721 0.97748 1.22733 1.01521 0.94085 0.89403 1.64726 1.37840 1.05807 1.16478 1.22191 0.93454 0.94809 0.96298 1.22012 0.96535 0.90610 0.97259 1.62191 1.14197 1.34088 1.15891 1.22888 0.90191 0.97985 1.00427 1.22768 1.00463 0.94688 0.83341 1.87959 1.31342 1.87294 1.26072 1.22792 0.84901 0.95464 0.98152 1.22847 1.01327 0.97903 0.89085 1.22974 0.96032 0.88048 0.99609 0.92582 0.98510 1.01846 0.84682 0.91582 0.91927 0.92491 0.89325 0.94558 0.89153 0.89858 0.95545 0.95130 0.88775 0.91576 0.87093 0.91618 0.86817 0.88316 0.94900 0.90451 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.82 9.32 25.60 0.24 -30.58 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.52 5.31 85.56 0.45 11.97 16 10 N -0.68 -29.35 6.36 -489.35 -3.11 -32.47 16 11 C 0.08 2.84 3.36 46.12 0.15 3.00 16 12 H 0.06 2.53 7.86 -2.39 -0.02 2.51 16 13 C -0.16 -4.75 6.62 31.48 0.21 -4.54 16 14 C 0.05 1.21 6.70 86.45 0.58 1.79 16 15 N -0.52 -13.08 5.35 -883.01 -4.73 -17.81 16 16 C 0.06 1.23 4.64 86.30 0.40 1.63 16 17 C 0.06 1.27 4.63 86.30 0.40 1.67 16 18 N -0.54 -9.62 4.73 -895.23 -4.23 -13.85 16 19 C 0.01 0.22 5.44 86.31 0.47 0.69 16 20 C 0.06 0.95 7.01 72.01 0.50 1.46 16 21 O -0.41 -7.58 10.83 -148.98 -1.61 -9.19 16 22 C 0.06 0.90 7.01 72.01 0.50 1.41 16 23 C 0.02 0.26 5.64 86.31 0.49 0.75 16 24 C 0.06 1.81 5.05 86.65 0.44 2.25 16 25 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 27 H -0.04 -2.09 8.14 -2.38 -0.02 -2.10 16 28 H 0.34 13.69 8.11 -89.70 -0.73 12.96 16 29 H 0.07 2.01 7.57 -2.39 -0.02 2.00 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 0.72 6.60 -2.39 -0.02 0.70 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 36 H 0.03 0.60 7.17 -2.39 -0.02 0.58 16 37 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 1.43 6.50 -2.39 -0.02 1.41 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.33 8.09 -2.38 -0.02 1.32 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 2.32 7.77 -2.38 -0.02 2.30 16 46 H 0.05 1.34 8.02 -2.39 -0.02 1.32 16 Total: -1.00 -64.94 356.60 -5.87 -70.81 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.21 Total: 20.53 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.30 Total: -7.97 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -11.79 Total: -120.57 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.61 Total: -9.19 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.94 -5.87 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591740093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.449 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds