Wall clock time and date at job start Tue Mar 31 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47281 * 2 1 4 4 C 1.46766 * 124.34665 * 269.95037 * 3 2 1 5 5 C 1.54478 * 105.46967 * 197.03586 * 4 3 2 6 6 H 1.09005 * 111.00165 * 216.45231 * 5 4 3 7 7 C 1.52998 * 110.96779 * 92.70596 * 5 4 3 8 8 N 1.46506 * 109.47237 * 181.16317 * 7 5 4 9 9 C 1.34773 * 119.99969 * 179.72043 * 8 7 5 10 10 O 1.21586 * 120.00012 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99940 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00211 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47428 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47327 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99793 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47127 * 59.99950 * 18 16 14 20 20 H 1.48497 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47080 * 300.00056 * 18 16 14 22 22 C 1.54625 * 101.76964 * 334.58365 * 5 4 3 23 23 C 1.34419 * 124.35355 * 89.97328 * 3 2 1 24 24 O 1.21288 * 124.93536 * 359.53564 * 23 3 2 25 25 H 1.08995 * 109.47602 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47116 * 300.00616 * 1 2 3 27 27 H 1.08998 * 109.46886 * 59.99745 * 1 2 3 28 28 H 1.08998 * 109.46772 * 239.99572 * 2 1 3 29 29 H 1.08999 * 109.47169 * 119.99788 * 2 1 3 30 30 H 1.09003 * 110.24360 * 78.04273 * 4 3 2 31 31 H 1.08998 * 110.24479 * 316.03656 * 4 3 2 32 32 H 1.09001 * 109.47671 * 61.16657 * 7 5 4 33 33 H 1.08998 * 109.47454 * 301.16654 * 7 5 4 34 34 H 0.97005 * 119.99811 * 0.02562 * 8 7 5 35 35 H 0.97004 * 120.00041 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47182 * 299.99924 * 12 11 9 37 37 H 1.09001 * 109.47115 * 59.99869 * 12 11 9 38 38 H 1.08998 * 109.47065 * 300.00226 * 13 12 11 39 39 H 1.09001 * 109.46892 * 59.99962 * 13 12 11 40 40 H 0.97000 * 120.00440 * 179.97438 * 17 16 14 41 41 H 1.09005 * 110.48599 * 143.47338 * 22 5 4 42 42 H 1.08994 * 110.48987 * 266.11897 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2954 2.1616 -1.2118 5 6 3.1756 3.3435 -0.7484 6 1 2.9330 4.2513 -1.3010 7 6 4.6616 3.0050 -0.8823 8 7 5.4646 4.1353 -0.4091 9 6 6.8101 4.0607 -0.4278 10 8 7.3576 3.0555 -0.8378 11 7 7.5488 5.1004 0.0080 12 6 9.0114 5.0196 -0.0128 13 6 9.6020 6.3225 0.5298 14 6 11.1066 6.2391 0.5090 15 1 11.5929 5.3462 0.1447 16 6 11.8622 7.3027 0.9549 17 7 11.2700 8.3897 1.3990 18 14 13.7271 7.1996 0.9284 19 1 14.1915 6.9894 -0.4663 20 1 14.3003 8.4636 1.4563 21 1 14.1721 6.0634 1.7748 22 6 2.7697 3.4754 0.7378 23 6 2.2708 2.0965 1.1097 24 8 2.1197 1.6950 2.2442 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.3651 2.5306 -1.6436 31 1 2.8337 1.5523 -1.9378 32 1 4.8961 2.8054 -1.9279 33 1 4.8886 2.1224 -0.2843 34 1 5.0277 4.9357 -0.0782 35 1 7.1120 5.9025 0.3348 36 1 9.3381 4.1857 0.6085 37 1 9.3522 4.8652 -1.0366 38 1 9.2753 7.1561 -0.0918 39 1 9.2612 6.4773 1.5536 40 1 11.8015 9.1378 1.7131 41 1 3.6327 3.7458 1.3463 42 1 1.9750 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593390282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:24 Heat of formation + Delta-G solvation = -78.916747 kcal Electronic energy + Delta-G solvation = -21739.193947 eV Core-core repulsion = 18332.678740 eV Total energy + Delta-G solvation = -3406.515208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95351 -39.49854 -37.07544 -35.56563 -34.71031 -33.44382 -32.75747 -30.32331 -29.35145 -28.34622 -26.06941 -24.39011 -23.63885 -21.30732 -21.04521 -20.60986 -19.63912 -18.08285 -17.29553 -16.55902 -16.34696 -15.90673 -15.66680 -15.36767 -14.52046 -14.46501 -14.32598 -14.12976 -13.89595 -13.74681 -13.44118 -13.22195 -13.07461 -12.74354 -12.34855 -12.26358 -12.01469 -11.79928 -11.52426 -11.31866 -11.18538 -11.00476 -10.64089 -10.30321 -10.04620 -9.96942 -9.55395 -9.27023 -9.12833 -9.05009 -8.47570 -8.25144 -6.08058 -4.10707 2.31665 2.62690 2.97255 3.32485 3.36152 3.39876 3.57585 3.94817 4.00994 4.21865 4.40618 4.47986 4.64861 4.71604 4.77538 4.94520 4.99264 5.06584 5.11838 5.28441 5.28957 5.30555 5.37931 5.48774 5.59484 5.74542 5.75040 6.19156 6.29530 6.40590 6.52784 6.76798 6.78449 6.99598 7.20184 7.57277 7.64325 7.88584 7.90937 8.26503 8.42008 8.93133 8.98780 9.53911 11.03541 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042976 B = 0.002400 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.371960 B =11663.441979 C =11791.515146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.621 5.621 4 C 0.112 3.888 5 C -0.114 4.114 6 H 0.108 0.892 7 C 0.149 3.851 8 N -0.754 5.754 9 C 0.699 3.301 10 O -0.598 6.598 11 N -0.738 5.738 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.155 4.155 23 C 0.519 3.481 24 O -0.531 6.531 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.107 0.893 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.932 -10.398 -6.441 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.357 5.357 4 C -0.012 4.012 5 C -0.133 4.133 6 H 0.126 0.874 7 C 0.024 3.976 8 N -0.411 5.411 9 C 0.398 3.602 10 O -0.476 6.476 11 N -0.391 5.391 12 C 0.017 3.983 13 C -0.024 4.024 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.195 4.195 23 C 0.307 3.693 24 O -0.407 6.407 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.440 -11.461 -6.151 26.808 hybrid contribution 0.543 0.829 0.252 1.023 sum -22.897 -10.633 -5.899 25.925 Atomic orbital electron populations 1.22157 0.95769 1.02404 1.02390 1.21358 0.94320 0.81051 1.03372 1.48340 1.66178 1.13885 1.07254 1.22054 0.99153 0.92446 0.87551 1.22448 0.94957 0.99634 0.96242 0.87432 1.21064 0.87024 0.89180 1.00340 1.45067 1.04992 1.19745 1.71342 1.16041 0.80940 0.84111 0.79080 1.90895 1.71297 1.31479 1.53972 1.45531 1.08624 1.17047 1.67923 1.21597 0.74799 1.01170 1.00731 1.19321 0.95941 0.90604 0.96568 1.21016 0.90821 1.01323 1.42832 0.92273 1.24996 0.98979 0.95283 0.95069 1.69944 1.35711 1.05084 1.42616 0.86561 0.85097 0.77298 0.78512 1.20114 1.21275 1.20110 1.22486 1.03929 0.96084 0.97020 1.20900 0.76471 0.87617 0.84343 1.90739 1.53458 1.75324 1.21179 0.91382 0.92272 0.92429 0.90189 0.89964 0.90425 0.89677 0.91016 0.91692 0.77168 0.77367 0.92780 0.92775 0.95971 0.95961 0.92812 0.87436 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.12 0.83 6.65 -4.04 -0.03 0.81 16 3 N -0.62 -4.97 2.93 -172.41 -0.51 -5.48 16 4 C 0.11 0.57 6.90 -3.12 -0.02 0.55 16 5 C -0.11 -0.65 3.22 -88.99 -0.29 -0.94 16 6 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 7 C 0.15 1.42 5.02 -4.04 -0.02 1.40 16 8 N -0.75 -8.63 5.11 -65.22 -0.33 -8.96 16 9 C 0.70 11.90 8.57 -86.92 -0.74 11.15 16 10 O -0.60 -12.75 16.34 5.29 0.09 -12.66 16 11 N -0.74 -12.83 5.56 -65.23 -0.36 -13.19 16 12 C 0.14 3.01 5.61 -4.04 -0.02 2.98 16 13 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.16 -1.15 6.24 -26.75 -0.17 -1.32 16 23 C 0.52 5.60 8.02 -10.86 -0.09 5.52 16 24 O -0.53 -8.11 17.60 5.55 0.10 -8.02 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.37 7.91 -51.93 -0.41 -0.05 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 3.33 8.21 -40.82 -0.34 3.00 16 35 H 0.39 5.79 8.49 -40.82 -0.35 5.44 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.11 0.92 7.40 -51.93 -0.38 0.54 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -36.02 353.63 -8.45 -44.47 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.93 Total: 1.03 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.55 Total: 6.45 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.47 Total: -53.04 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.18 Total: -20.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.02 -8.45 -44.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593390282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.447 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds